Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 2.0e-65 252.3 125 100.0
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 2.1e-43 179.1 126 76.2
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 2.2e-40 169.1 126 70.6
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 2.5e-36 155.6 126 66.7
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 4.7e-35 151.4 126 63.5
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 4.4e-33 144.8 124 62.9
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 2.2e-32 142.5 126 61.9
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 4.9e-32 141.4 126 58.7
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 4.1e-31 138.3 123 61.0
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 5.4e-31 137.9 126 59.5
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 1.2e-30 136.7 126 59.5
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 2.0e-30 136.0 126 58.7
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 5.9e-30 134.4 126 57.9
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 1.3e-29 133.3 126 57.1
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 1.3e-29 133.3 126 56.3
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 2.3e-29 132.5 86 73.3
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 2.3e-29 132.5 86 73.3
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 2.3e-29 132.5 126 56.3
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 2.3e-29 132.5 126 57.9
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 2.9e-29 132.1 126 55.6
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 2.9e-29 132.1 126 55.6
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 2.9e-29 132.1 126 54.0
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 3.8e-29 131.7 126 56.3
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 6.6e-29 131.0 133 51.9
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 8.6e-29 130.6 126 54.8
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 8.6e-29 130.6 126 54.0
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 8.6e-29 130.6 126 54.0
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 8.6e-29 130.6 126 54.8
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 1.1e-28 130.2 126 54.8
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 1.1e-28 130.2 126 54.8
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 1.1e-28 130.2 126 54.8
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 1.1e-28 130.2 86 72.1
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 1.5e-28 129.8 122 57.4
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 1.5e-28 129.8 126 54.8
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 1.9e-28 129.4 126 54.8
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 1.9e-28 129.4 126 54.8
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.9e-28 129.4 126 53.2
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.9e-28 129.4 126 53.2
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.9e-28 129.4 129 52.7
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 2.5e-28 129.0 126 56.3
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 2.5e-28 129.0 126 57.9
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 7.3e-28 127.5 126 56.3
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 7.3e-28 127.5 126 52.4
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 7.3e-28 127.5 126 52.4
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 7.3e-28 127.5 124 55.6
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 9.5e-28 127.1 126 53.2
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 1.2e-27 126.7 126 54.0
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 1.2e-27 126.7 126 56.3
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 1.2e-27 126.7 126 53.2
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 1.6e-27 126.3 124 55.6
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 1.6e-27 126.3 126 53.2
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 2.8e-27 125.6 126 54.8
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 2.8e-27 125.6 124 54.8
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 4.7e-27 124.8 129 53.5
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 4.7e-27 124.8 126 51.6
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 4.7e-27 124.8 126 54.0
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 8.0e-27 124.0 122 55.7
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 1.4e-26 123.2 125 53.6
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 1.4e-26 123.2 122 54.1
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 2.3e-26 122.5 130 52.3
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 2.3e-26 122.5 126 52.4
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 5.2e-26 121.3 123 52.8
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 6.8e-26 120.9 127 50.4
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 6.8e-26 120.9 127 50.4
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 8.9e-26 120.6 86 66.3
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 1.5e-25 119.8 86 64.0
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 2.0e-25 119.4 123 55.3
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 3.4e-25 118.6 121 55.4
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 4.4e-25 118.2 126 53.2
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.3e-24 116.7 143 46.2
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 1.3e-24 116.7 126 54.0
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 4.9e-24 114.8 122 53.3
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 4.9e-24 114.8 120 54.2
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 6.4e-24 114.4 126 47.6
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 8.3e-24 114.0 86 61.6
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 1.1e-23 113.6 124 52.4
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 1.4e-23 113.2 126 48.4
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 1.4e-23 113.2 126 46.8
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 1.9e-23 112.8 124 50.0
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 1.9e-23 112.8 124 50.8
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 2.4e-23 112.5 126 49.2
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 3.2e-23 112.1 104 59.6
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 3.2e-23 112.1 123 49.6
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 4.1e-23 111.7 117 53.8
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 7.0e-23 110.9 121 52.9
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 9.2e-23 110.5 124 48.4
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 9.2e-23 110.5 122 50.8
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 1.2e-22 110.2 124 49.2
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 1.2e-22 110.2 124 49.2
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.6e-22 109.8 161 41.0
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 1.6e-22 109.8 86 60.5
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 1.6e-22 109.8 84 60.7
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 2.0e-22 109.4 124 49.2
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 2.7e-22 109.0 126 49.2
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 6.0e-22 107.8 126 50.0
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 6.0e-22 107.8 122 45.9
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 6.0e-22 107.8 126 47.6
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 7.8e-22 107.5 102 54.9
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.0e-21 107.1 85 62.4
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 5.0e-21 104.8 101 58.4
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 3.3e-20 102.1 84 59.5
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 9.5e-20 100.5 64 73.4
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 8.0e-19 97.4 126 45.2
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 1.1e-18 97.1 71 67.6
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 2.3e-18 95.9 123 47.2
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 5.2e-18 94.7 104 52.9
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 6.8e-18 94.4 114 47.4
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 6.8e-18 94.4 110 43.6
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 9.2e-15 84.0 120 42.5
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 8.6e-13 77.4 126 38.1
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 1.2e-11 73.6 120 36.7
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.6e-11 73.2 122 36.1
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 2.3e-10 69.3 76 53.9
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 2.2e-08 62.8 120 35.0


User provided reference genes

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