Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 4.8e-70 267.7 134 100.0
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 7.5e-39 164.1 154 60.4
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 1.4e-37 159.8 160 58.8
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 1.6e-33 146.4 161 54.7
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 1.8e-32 142.9 160 53.1
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.4e-29 133.3 163 49.7
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 2.4e-29 132.5 166 50.0
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 1.2e-28 130.2 168 47.6
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 3.5e-28 128.6 168 47.0
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 3.0e-27 125.6 155 47.7
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 2.1e-25 119.4 166 42.2
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 2.8e-25 119.0 161 44.7
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 6.2e-25 117.9 167 43.1
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 6.2e-25 117.9 166 47.0
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 1.4e-24 116.7 164 43.3
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 1.8e-24 116.3 153 45.1
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 5.2e-24 114.8 171 43.9
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 8.9e-24 114.0 168 46.4
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 8.9e-24 114.0 168 46.4
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 8.9e-24 114.0 161 42.2
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 8.9e-24 114.0 166 42.8
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 2.0e-23 112.8 169 43.2
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 2.6e-23 112.5 161 42.2
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 3.4e-23 112.1 165 42.4
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 3.4e-23 112.1 163 44.2
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 4.4e-23 111.7 163 43.6
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 4.4e-23 111.7 163 43.6
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 7.5e-23 110.9 167 43.7
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 7.5e-23 110.9 168 44.6
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 9.8e-23 110.5 145 43.4
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 9.8e-23 110.5 168 45.8
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 1.7e-22 109.8 169 41.4
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 2.2e-22 109.4 173 41.6
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 2.9e-22 109.0 161 42.2
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 3.7e-22 108.6 161 41.6
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 4.9e-22 108.2 163 43.6
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 6.4e-22 107.8 166 40.4
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 8.3e-22 107.5 153 42.5
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 8.3e-22 107.5 165 42.4
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.1e-21 107.1 169 40.8
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.1e-21 107.1 167 42.5
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.4e-21 106.7 164 40.2
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 1.4e-21 106.7 147 40.8
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 1.9e-21 106.3 153 42.5
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 1.9e-21 106.3 165 41.2
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 2.4e-21 105.9 162 41.4
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 3.2e-21 105.5 169 43.8
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 3.2e-21 105.5 168 45.2
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 4.1e-21 105.1 163 41.1
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 4.1e-21 105.1 158 43.7
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 5.4e-21 104.8 166 39.8
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 7.1e-21 104.4 168 39.3
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.6e-20 103.2 166 39.8
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 1.6e-20 103.2 171 39.8
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 2.1e-20 102.8 165 41.8
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 2.1e-20 102.8 162 41.4
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 2.7e-20 102.4 173 39.9
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 2.7e-20 102.4 153 41.8
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 7.8e-20 100.9 162 41.4
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 7.8e-20 100.9 168 39.9
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 1.0e-19 100.5 162 39.5
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 1.0e-19 100.5 172 39.0
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 1.0e-19 100.5 163 41.1
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 1.3e-19 100.1 153 39.2
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.3e-19 100.1 160 40.6
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 1.7e-19 99.8 165 40.0
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 3.0e-19 99.0 145 38.6
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 5.1e-19 98.2 165 42.4
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 6.6e-19 97.8 145 42.1
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 8.6e-19 97.4 166 39.8
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.1e-18 97.1 175 37.1
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 1.9e-18 96.3 159 37.7
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 1.9e-18 96.3 147 40.1
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.5e-18 95.9 159 35.2
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 3.3e-18 95.5 122 44.3
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 3.3e-18 95.5 179 37.4
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 4.3e-18 95.1 165 41.2
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 4.3e-18 95.1 163 38.7
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 4.3e-18 95.1 163 38.7
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 5.6e-18 94.7 164 39.0
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 1.6e-17 93.2 162 41.4
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 1.6e-17 93.2 167 38.9
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 2.1e-17 92.8 172 40.7
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 2.1e-17 92.8 176 36.9
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 4.7e-17 91.7 161 39.8
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 8.1e-17 90.9 168 38.1
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.4e-16 90.1 162 35.8
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 1.4e-16 90.1 174 36.8
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 1.4e-16 90.1 169 37.9
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 3.1e-16 89.0 171 38.0
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 6.8e-16 87.8 180 35.0
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 6.8e-16 87.8 180 35.0
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 1.2e-15 87.0 164 36.6
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.4e-15 85.1 170 35.9
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 4.4e-15 85.1 151 40.4
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 5.8e-15 84.7 168 35.7
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.6e-15 84.3 170 35.3
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 1.3e-14 83.6 167 34.7
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.2e-14 82.8 147 39.5
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 2.2e-14 82.8 170 35.3
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 2.9e-14 82.4 163 34.4
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.7e-14 82.0 169 34.9
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 4.9e-14 81.6 167 38.3
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.9e-13 79.7 170 37.6
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 1.6e-12 76.6 157 33.1
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 3.5e-12 75.5 48 68.8
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 1.3e-11 73.6 161 34.2
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-11 73.6 46 65.2
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.3e-11 73.6 174 36.2
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 5.1e-11 71.6 137 32.8
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 1.5e-10 70.1 147 31.3
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.5e-10 70.1 151 34.4
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 4.3e-10 68.6 153 35.3
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 5.6e-10 68.2 48 56.2
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 2.0e-07 59.7 48 54.2
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 5.8e-07 58.2 48 50.0


User provided reference genes

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