Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g008640 Medicago truncatula HOM05D002676 ORTHO05D003194 4.3e-92 341.3 170 100.0
MBI12_g30149_MAGBIO Magnolia biondii HOM05D002676 ORTHO05D003194 3.2e-10 69.3 79 40.5
SGA_v2.0_scaffold44G16866 Striga asiatica HOM05D002676 ORTHO05D003194 1.2e-09 67.4 95 35.8
Zm00001eb172350 Zea mays HOM05D002676 ORTHO05D003194 1.2e-09 67.4 80 36.2
CAN.G65.146 Capsicum annuum HOM05D002676 ORTHO05D003194 2.1e-09 66.6 78 38.5
CBR_g19537 Chara braunii HOM05D002676 ORTHO05D003194 2.1e-09 66.6 75 41.3
Zm00001eb415710 Zea mays HOM05D002676 ORTHO05D003194 2.1e-09 66.6 80 37.5
HPP92_020109 Vanilla planifolia HOM05D002676 ORTHO05D003194 2.7e-09 66.2 77 40.3
Peaxi162Scf00166g00910 Petunia axillaris HOM05D002676 ORTHO05D003194 3.5e-09 65.9 75 42.7
Lj1g0014590 Lotus japonicus HOM05D002676 ORTHO05D003194 4.6e-09 65.5 86 36.0
Oeu029328.1 Olea europaea HOM05D002676 ORTHO05D003194 6.0e-09 65.1 72 43.1
MSTRG.8589 Avicennia marina HOM05D002676 ORTHO05D003194 7.9e-09 64.7 76 40.8
CSS0031237 Camellia sinensis var. sinensis HOM05D002676 ORTHO05D003194 7.9e-09 64.7 82 39.0
Oeu061042.4 Olea europaea HOM05D002676 ORTHO05D003194 7.9e-09 64.7 76 39.5
Sopen06g029380 Solanum pennellii HOM05D002676 ORTHO05D003194 7.9e-09 64.7 81 37.0
GSVIVG01016796001 Vitis vinifera HOM05D002676 ORTHO05D003194 7.9e-09 64.7 83 37.3
DCAR_008993 Daucus carota HOM05D002676 ORTHO05D003194 1.0e-08 64.3 83 36.1
Nn1g00477 Nelumbo nucifera HOM05D002676 ORTHO05D003194 1.0e-08 64.3 79 39.2
ATR0579G011 Amborella trichopoda HOM05D002676 ORTHO05D003194 1.3e-08 63.9 75 38.7
MSTRG.26962 Avicennia marina HOM05D002676 ORTHO05D003194 1.3e-08 63.9 76 40.8
Duzib068G1387 Durio zibethinus HOM05D002676 ORTHO05D003194 1.3e-08 63.9 76 36.8
Mapoly0011s0012 Marchantia polymorpha HOM05D002676 ORTHO05D003194 1.3e-08 63.9 75 37.3
COL.COLO4_23139 Corchorus olitorius HOM05D002676 ORTHO05D003194 1.8e-08 63.5 77 40.3
ECA238G0251 Erigeron canadensis HOM05D002676 ORTHO05D006846 1.8e-08 63.5 84 34.5
Nitab4.5_0000021g0130 Nicotiana tabacum HOM05D002676 ORTHO05D003194 1.8e-08 63.5 76 39.5
Nitab4.5_0004582g0060 Nicotiana tabacum HOM05D002676 ORTHO05D003194 1.8e-08 63.5 76 39.5
Solyc03g080050.3 Solanum lycopersicum HOM05D002676 ORTHO05D003194 1.8e-08 63.5 76 39.5
Sopen03g021770 Solanum pennellii HOM05D002676 ORTHO05D003194 1.8e-08 63.5 76 39.5
PGSC0003DMG400000577 Solanum tuberosum HOM05D002676 ORTHO05D003194 1.8e-08 63.5 76 39.5
TAR629G0525 Trochodendron aralioides HOM05D002676 ORTHO05D003194 1.8e-08 63.5 79 36.7
vmacro06467 Vaccinium macrocarpon HOM05D002676 ORTHO05D003194 1.8e-08 63.5 82 36.6
AagrBONN_evm.TU.Sc2ySwM_344.3847 Anthoceros agrestis HOM05D002676 ORTHO05D003194 2.3e-08 63.2 75 38.7
COL.COLO4_14391 Corchorus olitorius HOM05D002676 ORTHO05D003194 2.3e-08 63.2 83 36.1
HanXRQChr04g0117931 Helianthus annuus HOM05D002676 ORTHO05D003194 2.3e-08 63.2 76 36.8
Medtr3g093220 Medicago truncatula HOM05D002676 ORTHO05D003194 2.3e-08 63.2 83 36.1
PSO063G5217 Papaver somniferum HOM05D002676 ORTHO05D003194 2.3e-08 63.2 75 37.3
PSO782G3149 Papaver somniferum HOM05D002676 ORTHO05D003194 2.3e-08 63.2 75 37.3
Pp3c14_5440 Physcomitrium patens HOM05D002676 ORTHO05D003194 2.3e-08 63.2 87 33.3
Sc19g0000430 Simmondsia chinensis HOM05D002676 ORTHO05D003194 2.3e-08 63.2 79 34.2
CSS0014747 Camellia sinensis var. sinensis HOM05D002676 ORTHO05D003194 3.0e-08 62.8 82 37.8
CSS0034101 Camellia sinensis var. sinensis HOM05D002676 ORTHO05D003194 3.0e-08 62.8 76 38.2
Migut.F00973 Erythranthe guttata HOM05D002676 ORTHO05D003194 3.0e-08 62.8 76 36.8
FAN01G2562 Fragaria x ananassa HOM05D002676 ORTHO05D003194 3.0e-08 62.8 83 34.9
FAN10G2430 Fragaria x ananassa HOM05D002676 ORTHO05D003194 3.0e-08 62.8 83 34.9
FAN10G2824 Fragaria x ananassa HOM05D002676 ORTHO05D003194 3.0e-08 62.8 83 34.9
Lsat_1_v5_gn_2_135521 Lactuca sativa HOM05D002676 ORTHO05D003194 3.0e-08 62.8 76 36.8
SEGI_33944 Sequoiadendron giganteum HOM05D002676 ORTHO05D003194 3.0e-08 62.8 75 37.3
CAN.G303.47 Capsicum annuum HOM05D002676 ORTHO05D003194 3.9e-08 62.4 76 38.2
Duzib205G1101 Durio zibethinus HOM05D002676 ORTHO05D003194 3.9e-08 62.4 76 36.8
Gohir.D08G117500 Gossypium hirsutum HOM05D002676 ORTHO05D003194 3.9e-08 62.4 76 36.8
Gorai.004G126000 Gossypium raimondii HOM05D002676 ORTHO05D003194 3.9e-08 62.4 76 36.8
Lalb_Chr11g0067521 Lupinus albus HOM05D002676 ORTHO05D003194 3.9e-08 62.4 86 34.9
Os08g0158500 Oryza sativa ssp. japonica HOM05D002676 ORTHO05D003194 3.9e-08 62.4 76 36.8
Hund09742 Selenicereus undatus HOM05D002676 ORTHO05D003194 3.9e-08 62.4 88 34.1
Solyc06g073030.3 Solanum lycopersicum HOM05D002676 ORTHO05D003194 3.9e-08 62.4 71 39.4
Atru.chr12.2511 Acer truncatum HOM05D002676 ORTHO05D003194 5.1e-08 62.0 83 34.9
Atru.chr12.2533 Acer truncatum HOM05D002676 ORTHO05D003194 5.1e-08 62.0 83 34.9
Ah.13g070950 Amaranthus hybridus HOM05D002676 ORTHO05D003194 5.1e-08 62.0 79 34.2
arahy.Tifrunner.gnm1.ann1.989YCX Arachis hypogaea HOM05D002676 ORTHO05D003194 5.1e-08 62.0 86 34.9
arahy.Tifrunner.gnm1.ann1.VNL2K0 Arachis hypogaea HOM05D002676 ORTHO05D003194 5.1e-08 62.0 86 34.9
CiPaw.06G039000 Carya illinoinensis HOM05D002676 ORTHO05D003194 5.1e-08 62.0 76 36.8
QL09p006151 Quercus lobata HOM05D002676 ORTHO05D003194 5.1e-08 62.0 76 36.8
THA.LOC104811884 Tarenaya hassleriana HOM05D002676 ORTHO05D003194 5.1e-08 62.0 88 35.2
TWI14G1344 Tripterygium wilfordii HOM05D002676 ORTHO05D003194 5.1e-08 62.0 83 34.9
TAR375G0760 Trochodendron aralioides HOM05D002676 ORTHO05D003194 5.1e-08 62.0 101 34.7
arahy.Tifrunner.gnm1.ann1.9VIW60 Arachis hypogaea HOM05D002676 ORTHO05D003194 6.7e-08 61.6 86 33.7
arahy.Tifrunner.gnm1.ann1.F37GPL Arachis hypogaea HOM05D002676 ORTHO05D003194 6.7e-08 61.6 86 33.7
Cpa.g.sc3.176 Carica papaya HOM05D002676 ORTHO05D003194 6.7e-08 61.6 76 36.8
ClCG07G009690 Citrullus lanatus HOM05D002676 ORTHO05D003194 6.7e-08 61.6 76 36.8
MELO3C024849.2 Cucumis melo HOM05D002676 ORTHO05D003194 6.7e-08 61.6 76 36.8
Gohir.A12G245300 Gossypium hirsutum HOM05D002676 ORTHO05D003194 6.7e-08 61.6 76 36.8
Gohir.D12G246000 Gossypium hirsutum HOM05D002676 ORTHO05D003194 6.7e-08 61.6 76 36.8
Gorai.008G263700 Gossypium raimondii HOM05D002676 ORTHO05D003194 6.7e-08 61.6 76 36.8
Peaxi162Scf01026g00243 Petunia axillaris HOM05D002676 ORTHO05D003194 6.7e-08 61.6 75 38.7
Prupe.2G321200 Prunus persica HOM05D002676 ORTHO05D003194 6.7e-08 61.6 83 33.7
SGA_v2.0_scaffold141G35589 Striga asiatica HOM05D002676 ORTHO05D003194 6.7e-08 61.6 76 36.8
EL10Ac3g05141 Beta vulgaris HOM05D002676 ORTHO05D003194 8.7e-08 61.2 72 36.1
AUR62005955 Chenopodium quinoa HOM05D002676 ORTHO05D003194 8.7e-08 61.2 79 34.2
AUR62028109 Chenopodium quinoa HOM05D002676 ORTHO05D003194 8.7e-08 61.2 79 34.2
Hma1.2p1_0415F.1_g148330 Hydrangea macrophylla HOM05D002676 ORTHO05D003194 8.7e-08 61.2 76 38.2
Manes.05G196100 Manihot esculenta HOM05D002676 ORTHO05D003194 8.7e-08 61.2 76 36.8
CiPaw.05G208000 Carya illinoinensis HOM05D002676 ORTHO05D003194 1.1e-07 60.8 76 36.8
Migut.F00992 Erythranthe guttata HOM05D002676 ORTHO05D003194 1.1e-07 60.8 76 34.2
Lalb_Chr08g0239461 Lupinus albus HOM05D002676 ORTHO05D003194 1.1e-07 60.8 76 35.5
Potri.012G005500 Populus trichocarpa HOM05D002676 ORTHO05D003194 1.1e-07 60.8 76 36.8
Rhsim03G0217600 Rhododendron simsii HOM05D002676 ORTHO05D003194 1.1e-07 60.8 76 36.8
SMO367G0529 Selaginella moellendorffii HOM05D002676 ORTHO05D003194 1.1e-07 60.8 75 34.7
AL7G25170 Arabidopsis lyrata HOM05D002676 ORTHO05D003194 1.5e-07 60.5 84 33.3
Carub.0007s1328 Capsella rubella HOM05D002676 ORTHO05D003194 1.5e-07 60.5 84 33.3
CARHR267300 Cardamine hirsuta HOM05D002676 ORTHO05D003194 1.5e-07 60.5 84 34.5
Ca_16795_v3 Cicer arietinum L. HOM05D002676 ORTHO05D003194 1.5e-07 60.5 76 35.5
Phvul.009G039300 Phaseolus vulgaris HOM05D002676 ORTHO05D003194 1.5e-07 60.5 76 35.5
Potri.012G009800 Populus trichocarpa HOM05D002676 ORTHO05D003194 1.5e-07 60.5 76 36.8
Potri.015G001900 Populus trichocarpa HOM05D002676 ORTHO05D003194 1.5e-07 60.5 83 33.7
VMungo1309G0526 Vigna mungo HOM05D002676 ORTHO05D003194 1.5e-07 60.5 76 35.5
Ciclev10020366m.g Citrus clementina HOM05D002676 ORTHO05D003194 1.9e-07 60.1 83 34.9
Haze_00322 Corylus avellana HOM05D002676 ORTHO05D003194 1.9e-07 60.1 76 36.8
Dinv29198 Davidia involucrata HOM05D002676 ORTHO05D003194 1.9e-07 60.1 82 36.6
Eucgr.K00456 Eucalyptus grandis HOM05D002676 ORTHO05D003194 1.9e-07 60.1 76 34.2
Hma1.2p1_0115F.1_g055650 Hydrangea macrophylla HOM05D002676 ORTHO05D003194 1.9e-07 60.1 76 36.8
MBI11_g23191_MAGBIO Magnolia biondii HOM05D002676 ORTHO05D003194 1.9e-07 60.1 75 37.3
PGR142G3496 Punica granatum HOM05D002676 ORTHO05D003194 1.9e-07 60.1 76 34.2
Sabra15G0001200 Salix brachista HOM05D002676 ORTHO05D003194 1.9e-07 60.1 83 33.7
Sed0003975 Sechium edule HOM05D002676 ORTHO05D003194 1.9e-07 60.1 86 33.7
vmacro10169 Vaccinium macrocarpon HOM05D002676 ORTHO05D003194 1.9e-07 60.1 84 34.5
CANSAT21G0360 Cannabis sativa HOM05D002676 ORTHO05D003194 2.5e-07 59.7 76 36.8
CARHR235280 Cardamine hirsuta HOM05D002676 ORTHO05D003194 2.5e-07 59.7 84 33.3
CsaV3_4G009820 Cucumis sativus L. HOM05D002676 ORTHO05D003194 2.5e-07 59.7 76 34.2
Glyma.04G226400 Glycine max HOM05D002676 ORTHO05D003194 2.5e-07 59.7 76 35.5
Glyma.06G138500 Glycine max HOM05D002676 ORTHO05D003194 2.5e-07 59.7 76 35.5
MBI11_g23188_MAGBIO Magnolia biondii HOM05D002676 ORTHO05D003194 2.5e-07 59.7 70 38.6
Psat5g070720 Pisum sativum HOM05D002676 ORTHO05D003194 2.5e-07 59.7 76 35.5
Potri.012G011345 Populus trichocarpa HOM05D002676 ORTHO05D003194 2.5e-07 59.7 72 38.9
RcHm_v2.0_Chr1g0383201 Rosa chinensis HOM05D002676 ORTHO05D003194 2.5e-07 59.7 83 32.5
TPR.G35914 Trifolium pratense HOM05D002676 ORTHO05D003194 2.5e-07 59.7 76 35.5
Cfa016139 Carpinus fangiana HOM05D002676 ORTHO05D003194 3.3e-07 59.3 78 34.6
Cc02_g00670 Coffea canephora HOM05D002676 ORTHO05D003194 3.3e-07 59.3 76 35.5
Thhalv10025217m.g Eutrema salsugineum HOM05D002676 ORTHO05D003194 3.3e-07 59.3 84 32.1
PRCOL_00005892 Prasinoderma coloniale HOM05D002676 ORTHO05D003194 3.3e-07 59.3 73 37.0
Rhsim09G0210700 Rhododendron simsii HOM05D002676 ORTHO05D003194 3.3e-07 59.3 83 34.9
Sp7g25510 Schrenkiella parvula HOM05D002676 ORTHO05D003194 3.3e-07 59.3 84 32.1
Thecc.03G211300 Theobroma cacao HOM05D002676 ORTHO05D003194 3.3e-07 59.3 62 41.9
BcaNung01658 Brassica carinata HOM05D002676 ORTHO05D003194 4.3e-07 58.9 84 32.1
A01p18790 Brassica napus HOM05D002676 ORTHO05D003194 4.3e-07 58.9 84 32.1
C01p23730 Brassica napus HOM05D002676 ORTHO05D003194 4.3e-07 58.9 84 32.1
BolC1t02325H Brassica oleracea HOM05D002676 ORTHO05D003194 4.3e-07 58.9 84 32.1
BraA01t01823Z Brassica rapa HOM05D002676 ORTHO05D003194 4.3e-07 58.9 84 32.1
DCAR_020386 Daucus carota HOM05D002676 ORTHO05D003194 4.3e-07 58.9 82 34.1
FvH4_7g33130 Fragaria vesca HOM05D002676 ORTHO05D003194 4.3e-07 58.9 83 33.7
Gohir.A08G106100 Gossypium hirsutum HOM05D002676 ORTHO05D003194 4.3e-07 58.9 76 35.5
BcaNung07039 Brassica carinata HOM05D002676 ORTHO05D003194 5.6e-07 58.5 76 34.2
PGSC0003DMG400026924 Solanum tuberosum HOM05D002676 ORTHO05D003194 5.6e-07 58.5 75 36.0
Aa31LG3G9930 Aethionema arabicum HOM05D002676 ORTHO05D003194 7.4e-07 58.2 84 33.3
Cre19.g750847 Chlamydomonas reinhardtii HOM05D002676 ORTHO05D003194 7.4e-07 58.2 79 35.4
AT4G27585 Arabidopsis thaliana HOM05D002676 ORTHO05D003194 9.6e-07 57.8 75 34.7
MD01G1230500 Malus domestica HOM05D002676 ORTHO05D003194 9.6e-07 57.8 83 33.7
Peaxi162Scf00815g00117 Petunia axillaris HOM05D002676 ORTHO05D003194 9.6e-07 57.8 76 38.2
BcaB01g04275 Brassica carinata HOM05D002676 ORTHO05D003194 1.3e-06 57.4 84 33.3
BcaC01g06285 Brassica carinata HOM05D002676 ORTHO05D003194 1.3e-06 57.4 84 33.3
A03p14800 Brassica napus HOM05D002676 ORTHO05D003194 1.3e-06 57.4 84 33.3
C03p17290 Brassica napus HOM05D002676 ORTHO05D003194 1.3e-06 57.4 84 33.3
BolC3t14143H Brassica oleracea HOM05D002676 ORTHO05D003194 1.3e-06 57.4 84 33.3
BraA03t10773Z Brassica rapa HOM05D002676 ORTHO05D003194 1.3e-06 57.4 84 33.3
Medtr3g093120 Medicago truncatula HOM05D000002 ORTHO05D000001 1.3e-06 57.4 83 38.6
Medtr3g093180 Medicago truncatula HOM05D002676 ORTHO05D003194 1.3e-06 57.4 76 36.8
Nitab4.5_0000568g0210 Nicotiana tabacum HOM05D002676 ORTHO05D003194 1.3e-06 57.4 76 36.8
AL8G29230 Arabidopsis lyrata HOM05D002676 ORTHO05D003194 2.1e-06 56.6 84 32.1
BcaB08g35760 Brassica carinata HOM05D002676 ORTHO05D003194 2.1e-06 56.6 84 33.3
A10p11390 Brassica napus HOM05D002676 ORTHO05D003194 2.1e-06 56.6 84 33.3
C09p44190 Brassica napus HOM05D002676 ORTHO05D003194 2.1e-06 56.6 84 33.3
BolC9t57291H Brassica oleracea HOM05D002676 ORTHO05D003194 2.1e-06 56.6 84 33.3
BraA10t43233Z Brassica rapa HOM05D002676 ORTHO05D003194 2.1e-06 56.6 84 33.3
Carub.0008s1439 Capsella rubella HOM05D002676 ORTHO05D003194 2.1e-06 56.6 84 33.3
Thhalv10015444m.g Eutrema salsugineum HOM05D002676 ORTHO05D003194 2.1e-06 56.6 78 35.9
BcaB01g04272 Brassica carinata HOM05D002676 ORTHO05D003194 2.8e-06 56.2 84 32.1
C02p17640 Brassica napus HOM05D002676 ORTHO05D003194 2.8e-06 56.2 84 33.3
Sp6g16130 Schrenkiella parvula HOM05D002676 ORTHO05D003194 2.8e-06 56.2 84 33.3
MCO05G415 Micromonas commoda HOM05D002676 ORTHO05D003194 3.7e-06 55.8 75 37.3
Aqoxy5G04376 Aquilegia oxysepala HOM05D002676 ORTHO05D003194 6.2e-06 55.1 76 34.2
BcaC03g14351 Brassica carinata HOM05D002676 ORTHO05D003194 6.2e-06 55.1 84 33.3
A02p10570 Brassica napus HOM05D002676 ORTHO05D003194 6.2e-06 55.1 75 34.7
BolC2t07895H Brassica oleracea HOM05D002676 ORTHO05D003194 6.2e-06 55.1 84 33.3
BraA02t06122Z Brassica rapa HOM05D002676 ORTHO05D003194 6.2e-06 55.1 75 34.7
CSS0047140 Camellia sinensis var. sinensis HOM05D002676 ORTHO05D003194 8.1e-06 54.7 80 37.5
MD07G1302100 Malus domestica HOM05D002676 ORTHO05D003194 8.1e-06 54.7 75 33.3


User provided reference genes

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