Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g008630 Medicago truncatula HOM05D000126 ORTHO05D000085 5.4e-33 144.1 90 100.0
Medtr1g113750 Medicago truncatula HOM05D000126 ORTHO05D000085 3.3e-14 81.6 100 53.0
Psat6g008840 Pisum sativum HOM05D000126 ORTHO05D000085 1.6e-13 79.3 98 53.1
Medtr1g022245 Medicago truncatula HOM05D000126 ORTHO05D000085 2.1e-13 79.0 95 64.2
Psat6g006880 Pisum sativum HOM05D000126 ORTHO05D000085 2.1e-13 79.0 98 54.1
TPR.G20155 Trifolium pratense HOM05D000126 ORTHO05D000085 7.6e-11 70.5 39 87.2
TPR.G37923 Trifolium pratense HOM05D000126 ORTHO05D000085 2.9e-10 68.6 46 78.3
Ca_04255_v3 Cicer arietinum L. HOM05D000126 ORTHO05D000085 1.2e-08 63.2 43 69.8
TPR.G2440 Trifolium pratense HOM05D000126 ORTHO05D000085 6.0e-08 60.8 39 74.4
ECA240G0001 Erigeron canadensis HOM05D000126 ORTHO05D000085 1.3e-07 59.7 43 65.1
QL02p079755 Quercus lobata HOM05D000126 ORTHO05D000085 1.7e-07 59.3 39 74.4
ECA240G2673 Erigeron canadensis HOM05D000126 ORTHO05D000085 2.3e-07 58.9 43 65.1
Eucgr.J02147 Eucalyptus grandis HOM05D000126 ORTHO05D000085 2.3e-07 58.9 43 67.4
MBI04_g18047_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 2.3e-07 58.9 39 71.8
PSO532G0037 Papaver somniferum HOM05D000126 ORTHO05D000085 2.3e-07 58.9 39 64.1
QL02p079750 Quercus lobata HOM05D000126 ORTHO05D000085 2.3e-07 58.9 39 74.4
Eucgr.J02151 Eucalyptus grandis HOM05D000126 ORTHO05D000085 3.0e-07 58.5 43 67.4
QL02p079645 Quercus lobata HOM05D000126 ORTHO05D000085 3.0e-07 58.5 46 67.4
QL02p079713 Quercus lobata HOM05D000126 ORTHO05D000085 3.0e-07 58.5 46 67.4
Atru.chr8.2457 Acer truncatum HOM05D000126 ORTHO05D000085 3.9e-07 58.2 39 71.8
Dinv25312 Davidia involucrata HOM05D000126 ORTHO05D000085 5.1e-07 57.8 86 44.2
Eucgr.J02145 Eucalyptus grandis HOM05D000126 ORTHO05D000085 5.1e-07 57.8 43 67.4
MBI04_g45159_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 5.1e-07 57.8 39 69.2
Medtr1g011680 Medicago truncatula HOM05D000126 ORTHO05D000085 5.1e-07 57.8 89 46.1
PSO532G0083 Papaver somniferum HOM05D000126 ORTHO05D000085 8.7e-07 57.0 39 66.7
TPR.G2453 Trifolium pratense HOM05D000126 ORTHO05D000085 8.7e-07 57.0 39 69.2
Atru.chr9.2352 Acer truncatum HOM05D000126 ORTHO05D000085 1.1e-06 56.6 43 58.1
Ah.10g031170 Amaranthus hybridus HOM05D000126 ORTHO05D000085 1.1e-06 56.6 39 66.7
CSS0002097 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 1.1e-06 56.6 39 64.1
Cc00_g03770 Coffea canephora HOM05D000126 ORTHO05D000085 1.1e-06 56.6 42 73.8
Eucgr.J02148 Eucalyptus grandis HOM05D000126 ORTHO05D000085 1.1e-06 56.6 82 47.6
Eucgr.L00795 Eucalyptus grandis HOM05D000126 ORTHO05D000085 1.1e-06 56.6 43 67.4
Eucgr.L00796 Eucalyptus grandis HOM05D000126 ORTHO05D000085 1.1e-06 56.6 43 67.4
Dinv25308 Davidia involucrata HOM05D000126 ORTHO05D000085 1.5e-06 56.2 40 70.0
QL12p002863 Quercus lobata HOM05D000126 ORTHO05D000085 1.5e-06 56.2 43 65.1
Rhsim10G0030600 Rhododendron simsii HOM05D000126 ORTHO05D000085 1.5e-06 56.2 43 65.1
Thecc.03G075700 Theobroma cacao HOM05D000126 ORTHO05D000085 1.5e-06 56.2 39 64.1
vmacro05774 Vaccinium macrocarpon HOM05D000126 ORTHO05D000085 1.5e-06 56.2 39 66.7
Aqoxy4G02447 Aquilegia oxysepala HOM05D000126 ORTHO05D000085 1.9e-06 55.8 71 47.9
AUR62018315 Chenopodium quinoa HOM05D000126 ORTHO05D000085 1.9e-06 55.8 39 64.1
FvH4_6g49550 Fragaria vesca HOM05D000126 ORTHO05D000085 1.9e-06 55.8 43 60.5
FAN09G3236 Fragaria x ananassa HOM05D000126 ORTHO05D000085 1.9e-06 55.8 43 60.5
FAN14G0651 Fragaria x ananassa HOM05D000126 ORTHO05D000085 1.9e-06 55.8 43 60.5
MBI04_g09746_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 1.9e-06 55.8 39 66.7
PGR142G1257 Punica granatum HOM05D000126 ORTHO05D000085 1.9e-06 55.8 79 44.3
QL02p079604 Quercus lobata HOM05D000126 ORTHO05D000085 1.9e-06 55.8 46 65.2
Ah.10g031160 Amaranthus hybridus HOM05D000126 ORTHO05D000085 2.5e-06 55.5 39 66.7
EL10Ac2g02916 Beta vulgaris HOM05D000126 ORTHO05D000085 2.5e-06 55.5 39 66.7
AUR62018318 Chenopodium quinoa HOM05D000126 ORTHO05D000085 2.5e-06 55.5 71 43.7
Eucgr.I01905 Eucalyptus grandis HOM05D000126 ORTHO05D000085 2.5e-06 55.5 43 62.8
Eucgr.L00790 Eucalyptus grandis HOM05D000126 ORTHO05D000085 2.5e-06 55.5 83 47.0
PGR142G1487 Punica granatum HOM05D000126 ORTHO05D000085 2.5e-06 55.5 43 60.5
PGR142G2327 Punica granatum HOM05D000126 ORTHO05D000085 2.5e-06 55.5 79 44.3
PGR142G3595 Punica granatum HOM05D000126 ORTHO05D000085 2.5e-06 55.5 83 44.6
Migut.H02539 Erythranthe guttata HOM05D000126 ORTHO05D000085 3.3e-06 55.1 43 67.4
Hma1.2p1_0349F.1_g131990 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 3.3e-06 55.1 43 60.5
Hma1.2p1_0589F.1_g184850 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 3.3e-06 55.1 43 60.5
Hma1.2p1_2624F.1_g325623 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 3.3e-06 55.1 43 60.5
Lj5C324T3 Lonicera japonica HOM05D000126 ORTHO05D000085 3.3e-06 55.1 64 50.0
MBI04_g13870_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 3.3e-06 55.1 39 66.7
Manes.14G073200 Manihot esculenta HOM05D000126 ORTHO05D000085 3.3e-06 55.1 43 60.5
Manes.17G025599 Manihot esculenta HOM05D000126 ORTHO05D000085 3.3e-06 55.1 43 65.1
PSO532G0045 Papaver somniferum HOM05D000126 ORTHO05D000085 3.3e-06 55.1 39 61.5
PGR142G0178 Punica granatum HOM05D000126 ORTHO05D000085 3.3e-06 55.1 79 44.3
RcHm_v2.0_Chr2g0169551 Rosa chinensis HOM05D000126 ORTHO05D000085 3.3e-06 55.1 43 65.1
vmacro05769 Vaccinium macrocarpon HOM05D000126 ORTHO05D000085 3.3e-06 55.1 43 65.1
GSVIVG01008088001 Vitis vinifera HOM05D000126 ORTHO05D000085 3.3e-06 55.1 43 60.5
AUR62018312 Chenopodium quinoa HOM05D000126 ORTHO05D000085 4.3e-06 54.7 39 64.1
Cc00_g20120 Coffea canephora HOM05D000126 ORTHO05D000085 4.3e-06 54.7 43 62.8
FvH4_6g49560 Fragaria vesca HOM05D000126 ORTHO05D000085 4.3e-06 54.7 43 62.8
GSVIVG01032554001 Vitis vinifera HOM05D000126 ORTHO05D000085 4.3e-06 54.7 39 66.7
GSVIVG01032557001 Vitis vinifera HOM05D000126 ORTHO05D000085 4.3e-06 54.7 39 66.7
MSTRG.2476 Avicennia marina HOM05D000126 ORTHO05D000085 5.6e-06 54.3 39 69.2
CSS0009863 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 5.6e-06 54.3 39 64.1
CANSAT64G0545 Cannabis sativa HOM05D000126 ORTHO05D000085 5.6e-06 54.3 83 39.8
Eucgr.I01902 Eucalyptus grandis HOM05D000126 ORTHO05D000085 5.6e-06 54.3 43 60.5
FvH4_6g49580 Fragaria vesca HOM05D000126 ORTHO05D000085 5.6e-06 54.3 43 62.8
FAN02G1142 Fragaria x ananassa HOM05D000126 ORTHO05D000085 5.6e-06 54.3 43 62.8
FAN05G1478 Fragaria x ananassa HOM05D000126 ORTHO05D000085 5.6e-06 54.3 43 62.8
FAN09G1463 Fragaria x ananassa HOM05D000126 ORTHO05D000085 5.6e-06 54.3 43 62.8
FAN14G5505 Fragaria x ananassa HOM05D000126 ORTHO05D000085 5.6e-06 54.3 43 62.8
Hma1.2p1_0375F.1_g138830 Hydrangea macrophylla HOM05D000126 ORTHO05D000085 5.6e-06 54.3 39 66.7
Lj3A808T90 Lonicera japonica HOM05D000126 ORTHO05D000085 5.6e-06 54.3 43 62.8
Lj3C808T15 Lonicera japonica HOM05D000126 ORTHO05D000085 5.6e-06 54.3 43 62.8
Manes.06G098000 Manihot esculenta HOM05D000126 ORTHO05D000085 5.6e-06 54.3 39 61.5
Manes.11G068200 Manihot esculenta HOM05D000126 ORTHO05D000085 5.6e-06 54.3 83 42.2
PGR083G0873 Punica granatum HOM05D000126 ORTHO05D000085 5.6e-06 54.3 45 55.6
CSS0012124 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 62.8
CSS0038975 Camellia sinensis var. sinensis HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 62.8
Cfa007499 Carpinus fangiana HOM05D000126 ORTHO05D000085 7.3e-06 53.9 39 66.7
Eucgr.I01906 Eucalyptus grandis HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 55.8
FAN05G3350 Fragaria x ananassa HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 58.1
Lsat_1_v5_gn_6_72881 Lactuca sativa HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 62.8
Lsat_1_v5_gn_6_74200 Lactuca sativa HOM05D000126 ORTHO05D000085 7.3e-06 53.9 78 43.6
Lj5C324T1 Lonicera japonica HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 62.8
MBI01_g41227_MAGBIO Magnolia biondii HOM05D000126 ORTHO05D000085 7.3e-06 53.9 39 64.1
Manes.11G055440 Manihot esculenta HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 62.8
Manes.11G060207 Manihot esculenta HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 62.8
Manes.17G025400 Manihot esculenta HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 62.8
PSO532G0097 Papaver somniferum HOM05D000126 ORTHO05D000085 7.3e-06 53.9 39 59.0
QL10p014586 Quercus lobata HOM05D000126 ORTHO05D000085 7.3e-06 53.9 43 58.1
Aqoxy3G03210 Aquilegia oxysepala HOM05D000126 ORTHO05D000085 9.6e-06 53.5 39 66.7
CiPaw.03G031500 Carya illinoinensis HOM05D000126 ORTHO05D000085 9.6e-06 53.5 39 69.2
CiPaw.11G035100 Carya illinoinensis HOM05D000126 ORTHO05D000085 9.6e-06 53.5 39 61.5
CiPaw.11G035500 Carya illinoinensis HOM05D000126 ORTHO05D000085 9.6e-06 53.5 43 55.8
CiPaw.11G035600 Carya illinoinensis HOM05D000126 ORTHO05D000085 9.6e-06 53.5 42 59.5
Ciclev10019846m.g Citrus clementina HOM05D000126 ORTHO05D000085 9.6e-06 53.5 43 55.8
Haze_14599 Corylus avellana HOM05D000126 ORTHO05D000085 9.6e-06 53.5 39 66.7
MELO3C002222.2 Cucumis melo HOM05D000126 ORTHO05D000085 9.6e-06 53.5 39 61.5
CsaV3_1G008050 Cucumis sativus L. HOM05D000126 ORTHO05D000085 9.6e-06 53.5 39 61.5
Lj9P457T52 Lonicera japonica HOM05D000126 ORTHO05D000085 9.6e-06 53.5 43 62.8
Phvul.003G194800 Phaseolus vulgaris HOM05D000126 ORTHO05D000085 9.6e-06 53.5 39 64.1
PGR142G1833 Punica granatum HOM05D000126 ORTHO05D000085 9.6e-06 53.5 43 58.1
QL02p079772 Quercus lobata HOM05D000126 ORTHO05D000085 9.6e-06 53.5 43 60.5
QL04p003614 Quercus lobata HOM05D003599 ORTHO05D004221 9.6e-06 53.5 43 60.5
Rhsim10G0029900 Rhododendron simsii HOM05D000126 ORTHO05D000085 9.6e-06 53.5 43 62.8
vmacro05770 Vaccinium macrocarpon HOM05D000126 ORTHO05D000085 9.6e-06 53.5 43 62.8
vmacro05771 Vaccinium macrocarpon HOM05D000126 ORTHO05D000085 9.6e-06 53.5 43 62.8


User provided reference genes

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