Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g007950 Medicago truncatula HOM05D001081 ORTHO05D004708 3.1e-306 1054.3 518 100.0
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 3.6e-214 748.4 510 73.9
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 1.4e-197 693.3 511 70.1
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 5.1e-192 674.9 511 66.5
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 8.9e-181 637.5 482 66.4
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 6.2e-174 614.8 480 65.0
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 2.6e-164 582.8 508 59.6
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 2.6e-164 582.8 485 61.6
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 6.4e-163 578.2 501 60.3
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 1.9e-162 576.6 490 60.4
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 2.4e-162 576.2 493 60.0
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 1.5e-159 567.0 484 61.2
vmacro06386 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 1.3e-158 563.9 503 59.2
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 1.6e-158 563.5 489 60.1
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 2.1e-158 563.1 487 59.8
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 1.1e-157 560.8 488 59.6
CANSAT21G1825 Cannabis sativa HOM05D001081 ORTHO05D004708 1.2e-156 557.4 509 57.8
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 5.8e-156 555.1 483 59.8
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 1.0e-155 554.3 487 58.1
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 2.2e-155 553.1 486 59.3
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 2.9e-155 552.7 485 59.2
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 4.9e-155 552.0 483 57.8
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 2.8e-150 536.2 504 56.5
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 3.7e-150 535.8 482 58.5
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 1.5e-148 530.4 483 57.6
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 1.3e-147 527.3 506 54.9
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 1.3e-147 527.3 517 54.5
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 1.4e-146 523.9 511 55.0
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 1.9e-146 523.5 486 57.6
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 3.2e-146 522.7 482 56.8
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 1.2e-145 520.8 483 56.5
vmacro22638 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 4.6e-145 518.8 438 61.6
MD07G1288100 Malus domestica HOM05D001081 ORTHO05D004708 6.1e-145 518.5 474 56.5
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 1.3e-144 517.3 480 55.0
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 1.3e-144 517.3 501 54.3
Eucgr.G00143 Eucalyptus grandis HOM05D001081 ORTHO05D004708 7.4e-143 511.5 486 53.9
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 9.7e-143 511.1 565 50.4
AUR62019407 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.3e-142 510.8 487 54.0
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 4.1e-141 505.8 512 52.7
Lalb_Chr10g0091361 Lupinus albus HOM05D001081 ORTHO05D004708 3.4e-140 502.7 381 66.4
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 5.9e-140 501.9 512 52.0
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 2.2e-139 500.0 622 46.3
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 6.5e-139 498.4 494 53.4
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 6.5e-139 498.4 484 56.6
Eucgr.G00111 Eucalyptus grandis HOM05D001081 ORTHO05D004708 3.2e-138 496.1 486 52.7
Eucgr.H05016 Eucalyptus grandis HOM05D001081 ORTHO05D004708 7.2e-138 495.0 486 52.9
Eucgr.G00092 Eucalyptus grandis HOM05D001081 ORTHO05D004708 5.1e-136 488.8 486 52.5
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 8.8e-136 488.0 476 53.6
CiPaw.06G046000 Carya illinoinensis HOM05D001081 ORTHO05D004708 4.4e-135 485.7 384 64.8
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 2.2e-134 483.4 476 53.8
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 2.2e-134 483.4 479 53.4
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 1.4e-133 480.7 478 54.6
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 1.4e-133 480.7 478 54.6
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 2.4e-133 479.9 476 53.4
Sabra15G0067900 Salix brachista HOM05D001081 ORTHO05D004708 2.6e-132 476.5 555 49.0
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 3.4e-132 476.1 476 52.9
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 1.7e-131 473.8 504 52.2
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 1.7e-131 473.8 496 51.8
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 3.8e-131 472.6 491 53.6
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 1.1e-130 471.1 476 52.5
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 1.1e-130 471.1 476 52.5
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 1.1e-130 471.1 476 52.5
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 1.1e-130 471.1 532 49.6
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 1.9e-130 470.3 479 53.0
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 2.1e-129 466.8 482 52.3
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 2.7e-129 466.5 475 52.4
ATR0602G075 Amborella trichopoda HOM05D001081 ORTHO05D004708 3.6e-129 466.1 489 52.6
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 9.7e-127 458.0 539 48.2
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 8.2e-126 454.9 484 53.1
HanXRQChr08g0225341 Helianthus annuus HOM05D001081 ORTHO05D004708 2.0e-124 450.3 494 50.0
FAN06G3553 Fragaria x ananassa HOM05D001081 ORTHO05D004708 6.5e-123 445.3 381 60.1
HanXRQChr08g0225301 Helianthus annuus HOM05D001081 ORTHO05D004708 6.5e-123 445.3 489 50.1
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 1.5e-122 444.1 381 60.1
Ca_12791_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 1.9e-122 443.7 342 65.8
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.1e-121 440.3 508 49.6
FAN01G0187 Fragaria x ananassa HOM05D001081 ORTHO05D004708 1.8e-120 437.2 408 56.6
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 2.4e-117 426.8 511 48.7
Cc02_g01510 Coffea canephora HOM05D001081 ORTHO05D004708 9.1e-117 424.9 603 42.8
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 9.4e-114 414.8 374 57.5
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 3.0e-112 409.8 502 46.4
HanXRQChr08g0225291 Helianthus annuus HOM05D001081 ORTHO05D004708 7.5e-111 405.2 489 47.6
SalBow4G1120 Salvia bowleyana HOM05D001081 ORTHO05D004708 3.1e-109 399.8 391 54.5
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 9.8e-103 378.3 333 59.5
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 1.8e-101 374.0 479 46.1
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 5.4e-101 372.5 493 43.8
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 1.5e-98 364.4 362 54.1
Sabra15G0068100 Salix brachista HOM05D001081 ORTHO05D004708 9.2e-93 345.1 312 59.0
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 5.6e-90 335.9 525 38.9
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 6.2e-89 332.4 277 61.4
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 1.4e-88 331.3 285 59.3
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 9.8e-87 325.1 488 41.8
Aa31LG11G3510 Aethionema arabicum HOM05D001081 ORTHO05D004708 2.2e-86 323.9 397 47.6
Hma1.2p1_0404F.1_g145340 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 3.7e-86 323.2 283 60.8
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 5.6e-82 309.3 261 61.7
Cpa.g.sc3.91 Carica papaya HOM05D001081 ORTHO05D004708 4.7e-81 306.2 287 57.5
Mapoly0076s0015 Marchantia polymorpha HOM05D001081 ORTHO05D004708 2.3e-80 303.9 510 38.0
Mapoly0111s0028 Marchantia polymorpha HOM05D001081 ORTHO05D004708 1.5e-74 284.6 497 36.6
Ca_12793_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 2.4e-72 277.3 170 78.2
AagrBONN_evm.TU.Sc2ySwM_117.3719 Anthoceros agrestis HOM05D001081 ORTHO05D004708 1.5e-71 274.6 506 37.5
AagrBONN_evm.TU.Sc2ySwM_228.1615 Anthoceros agrestis HOM05D001081 ORTHO05D004708 2.2e-70 270.8 503 37.2
Aqoxy4G01594 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 6.0e-68 262.7 391 39.4
SMO213G0001 Selaginella moellendorffii HOM05D001081 ORTHO05D004708 1.3e-67 261.5 386 40.7
TWI39G0245 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 1.7e-62 244.6 210 58.6
Hma1.2p1_0404F.1_g145380 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 7.1e-61 239.2 206 59.2
HanXRQChr10g0291811 Helianthus annuus HOM05D001081 ORTHO05D004708 9.0e-56 222.2 181 64.1
Peaxi162Scf00740g00138 Petunia axillaris HOM05D001081 ORTHO05D004708 2.4e-53 214.2 178 60.1
SGA_v2.0_scaffold9G04846 Striga asiatica HOM05D001081 ORTHO05D004708 4.3e-50 203.4 200 57.0
Nitab4.5_0006933g0030 Nicotiana tabacum HOM05D001081 ORTHO05D004708 6.9e-48 196.1 159 61.6
Solyc03g083130.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 2.0e-47 194.5 162 60.5
Oeu041052.4 Olea europaea HOM05D001081 ORTHO05D004708 2.6e-47 194.1 167 56.9
Cpa.g.sc3.89 Carica papaya HOM05D001081 ORTHO05D004708 4.5e-47 193.4 157 61.8
Gohir.D11G256700 Gossypium hirsutum HOM05D001081 ORTHO05D010708 3.2e-45 187.2 150 67.3
Sp2g23080 Schrenkiella parvula HOM05D001081 ORTHO05D004708 1.0e-43 182.2 178 53.4
Gorai.010G233200 Gossypium raimondii HOM05D001081 ORTHO05D010708 1.5e-42 178.3 143 67.8
Hma1.2p1_0404F.1_g145350 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.5e-42 178.3 157 57.3
PSO170G6091 Papaver somniferum HOM05D001081 ORTHO05D004708 4.8e-41 173.3 241 41.1
Hma1.2p1_0404F.1_g145390 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.5e-39 168.3 180 51.1
Nitab4.5_0006933g0040 Nicotiana tabacum HOM05D001081 ORTHO05D004708 7.6e-39 166.0 205 45.9
AL6G35700 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 1.9e-37 161.4 159 55.3
FvH4_7g31511 Fragaria vesca HOM05D001081 ORTHO05D004708 1.0e-35 155.6 156 50.0
Pp3c8_21182 Physcomitrium patens HOM05D001081 ORTHO05D004708 3.2e-29 134.0 379 31.4
Gorai.011G131700 Gossypium raimondii HOM05D001081 ORTHO05D004708 2.5e-26 124.4 106 65.1
Solyc03g083120.3 Solanum lycopersicum HOM05D001081 ORTHO05D024756 4.1e-24 117.1 130 50.0
SEGI_37251 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 6.9e-24 116.3 117 48.7
Pp3c8_21170 Physcomitrium patens HOM05D001081 ORTHO05D004708 2.6e-23 114.4 301 31.6
Peaxi162Scf00740g00140 Petunia axillaris HOM05D001081 ORTHO05D024756 1.0e-22 112.5 177 36.7
Carub.0006s2204 Capsella rubella HOM05D001081 ORTHO05D024756 1.3e-22 112.1 139 44.6
FAN01G2325 Fragaria x ananassa HOM05D001081 ORTHO05D004708 7.2e-21 106.3 78 56.4
Sopen03g022620 Solanum pennellii HOM05D001081 ORTHO05D004708 9.4e-21 105.9 88 56.8
Migut.F00208 Erythranthe guttata HOM05D001081 ORTHO05D004708 3.6e-20 104.0 134 45.5
Solyc03g083190.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 4.7e-20 103.6 106 51.9
Pp3c22_17807 Physcomitrium patens HOM05D001081 ORTHO05D004708 6.7e-19 99.8 202 31.2
SEGI_15117 Sequoiadendron giganteum HOM05D001081 ORTHO05D004708 3.3e-18 97.4 157 36.9
Actinidia04725 Actinidia chinensis HOM05D001081 ORTHO05D004708 9.7e-18 95.9 71 60.6
Actinidia27675 Actinidia chinensis HOM05D001081 ORTHO05D004708 1.8e-16 91.7 71 59.2
Lalb_Chr10g0091351 Lupinus albus HOM05D001081 ORTHO05D004708 3.4e-15 87.4 114 46.5
Sopen03g019380 Solanum pennellii HOM05D001081 ORTHO05D029255 2.2e-14 84.7 129 41.1
Sopen03g022910 Solanum pennellii HOM05D001081 ORTHO05D004708 7.2e-13 79.7 109 45.0
Hma1.2p1_0013F.1_g008960 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 9.4e-13 79.3 45 80.0
Actinidia04689 Actinidia chinensis HOM05D001081 ORTHO05D004708 2.3e-11 74.7 58 58.6
Duzib205G2059 Durio zibethinus HOM05D001081 ORTHO05D004708 3.9e-11 73.9 63 54.0
Lsat_1_v5_gn_9_3381 Lactuca sativa HOM05D001081 ORTHO05D004708 3.9e-11 73.9 75 54.7
Cpa.g.sc3.90 Carica papaya HOM05D000004 ORTHO05D000002 9.7e-10 69.3 100 41.0
Sopen03g022930 Solanum pennellii HOM05D001081 ORTHO05D004708 9.7e-10 69.3 66 53.0
Lsat_1_v5_gn_6_63561 Lactuca sativa HOM05D001081 ORTHO05D004708 2.8e-09 67.8 58 60.3
Dinv08524 Davidia involucrata HOM05D001081 ORTHO05D004708 8.2e-09 66.2 146 30.8
AUR62000987 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.3e-06 58.9 44 63.6
Cpa.g.sc99.28 Carica papaya HOM05D001081 ORTHO05D004708 2.2e-06 58.2 65 43.1
MBI15_g44046_MAGBIO Magnolia biondii HOM05D006620 ORTHO05D025789 6.5e-06 56.6 48 58.3


User provided reference genes

Program Settings