Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 0.0e+00 1083.9 557 100.0
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 5.0e-270 934.1 556 87.9
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 5.7e-266 920.6 555 86.1
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 5.4e-216 754.6 561 72.2
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 3.1e-211 738.8 564 70.2
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 8.1e-188 661.0 552 65.4
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 4.5e-186 655.2 570 63.9
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 9.9e-186 654.1 564 65.1
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.3e-185 653.7 562 64.2
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 1.3e-182 643.7 544 63.2
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 2.5e-181 639.4 533 66.6
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 1.1e-176 624.0 556 62.4
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.5e-176 622.9 552 62.5
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 3.2e-176 622.5 548 61.1
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 4.2e-176 622.1 555 61.3
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 5.5e-176 621.7 542 63.5
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 2.7e-175 619.4 487 66.5
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 1.3e-174 617.1 555 61.1
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 1.8e-174 616.7 539 62.7
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 8.7e-174 614.4 558 61.5
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 7.4e-173 611.3 549 61.9
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.1e-172 609.8 538 62.5
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.1e-172 609.8 555 60.4
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 2.8e-172 609.4 575 58.6
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.7e-172 609.0 555 60.4
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 6.9e-171 604.7 540 61.3
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 1.5e-170 603.6 470 68.7
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 3.4e-170 602.4 556 60.1
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 5.9e-170 601.7 560 59.6
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.9e-169 599.4 549 61.0
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.9e-168 596.7 544 59.2
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 5.5e-168 595.1 551 61.3
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 7.2e-168 594.7 549 58.8
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 9.3e-168 594.3 553 59.0
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.1e-167 593.2 545 58.7
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 3.5e-167 592.4 557 58.5
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 4.6e-167 592.0 559 59.9
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 4.6e-167 592.0 545 58.7
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.1e-167 591.7 559 59.7
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 1.3e-166 590.5 545 58.3
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 5.1e-166 588.6 557 60.5
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 2.2e-164 583.2 558 58.2
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 2.2e-164 583.2 543 58.6
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 1.8e-163 580.1 555 58.9
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 3.1e-163 579.3 555 57.3
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.2e-162 577.4 474 64.3
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 4.5e-162 575.5 474 64.6
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 3.8e-161 572.4 557 56.9
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 5.5e-160 568.5 560 56.8
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 7.2e-160 568.2 569 57.6
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 3.6e-159 565.8 550 58.0
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 4.6e-159 565.5 550 57.5
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 6.1e-159 565.1 554 56.3
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 1.8e-158 563.5 548 56.8
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.1e-157 560.8 555 56.6
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 2.0e-157 560.1 549 57.9
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.5e-157 559.7 578 57.1
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 2.5e-157 559.7 555 56.4
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 1.3e-156 557.4 556 56.7
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 1.8e-155 553.5 546 55.7
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 2.4e-155 553.1 547 55.6
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 4.1e-155 552.4 550 55.8
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 4.1e-155 552.4 562 55.9
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 5.3e-155 552.0 555 54.2
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 6.9e-155 551.6 554 54.0
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 2.0e-154 550.1 551 54.4
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.0e-154 550.1 555 55.1
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 5.9e-154 548.5 547 56.1
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 5.9e-154 548.5 550 55.8
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 6.5e-153 545.0 560 55.4
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 6.5e-153 545.0 562 56.4
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 1.4e-152 543.9 495 58.2
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 9.4e-152 541.2 562 54.3
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 9.4e-152 541.2 548 54.7
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.2e-151 540.8 555 56.8
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.8e-150 537.0 557 54.2
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 2.3e-150 536.6 627 52.0
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 3.9e-150 535.8 570 53.7
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 8.8e-150 534.6 541 57.1
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.0e-149 533.5 563 52.4
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 4.4e-149 532.3 552 54.0
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 5.7e-149 531.9 553 54.2
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 9.7e-149 531.2 553 54.1
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.2e-148 530.0 548 55.8
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 3.7e-148 529.3 569 54.0
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 3.7e-148 529.3 556 54.7
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 6.3e-148 528.5 550 53.8
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 4.1e-147 525.8 554 54.0
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 9.1e-147 524.6 600 49.3
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.5e-146 522.3 561 54.9
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 1.5e-144 517.3 485 57.5
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 4.2e-144 515.8 555 51.9
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.4e-142 510.8 543 51.4
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 8.8e-142 508.1 486 56.2
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.3e-141 506.1 569 50.1
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.3e-141 506.1 555 52.1
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 2.2e-140 503.4 558 51.1
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 1.3e-137 494.2 576 49.7
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 5.0e-137 492.3 573 50.6
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 7.2e-136 488.4 497 58.6
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 1.6e-135 487.3 503 54.7
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 1.4e-134 484.2 548 52.9
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 1.8e-134 483.8 549 50.8
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 1.8e-134 483.8 528 53.2
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.0e-134 483.0 498 55.0
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 9.8e-133 478.0 605 46.6
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 3.7e-132 476.1 546 48.7
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 6.5e-129 465.3 469 53.7
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 7.2e-128 461.8 566 48.9
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 9.4e-128 461.5 516 51.0
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 5.2e-126 455.7 546 49.5
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 2.6e-125 453.4 452 57.7
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.3e-124 451.1 550 48.4
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 5.4e-123 445.7 546 46.2
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.6e-114 417.5 560 45.0
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.1e-107 394.8 536 42.5
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 1.9e-107 394.0 509 47.9
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 5.4e-107 392.5 448 48.4
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.6e-106 391.0 545 44.6
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.9e-104 384.0 464 50.2
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.3e-104 383.3 540 41.9
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.1e-103 378.6 595 39.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.1e-103 378.6 595 39.3
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.8e-102 375.6 587 40.7
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 3.7e-100 369.8 532 41.5
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 1.5e-96 357.8 317 62.5
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 1.2e-95 354.8 300 61.3
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.1e-94 350.1 500 42.4
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 8.1e-87 325.5 408 49.5
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 1.4e-83 314.7 561 38.3
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 5.3e-78 296.2 373 46.4
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 1.5e-72 278.1 702 30.9
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 2.6e-69 267.3 179 69.8
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.8e-69 266.2 584 33.7
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 9.9e-69 265.4 597 33.7
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 2.2e-68 264.2 168 73.8
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 4.5e-61 240.0 464 34.9
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 3.2e-59 233.8 394 40.1
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.6e-53 214.2 183 72.1
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 2.0e-45 188.0 194 49.5
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 4.5e-45 186.8 138 70.3
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 1.7e-44 184.9 188 56.4
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 8.5e-44 182.6 255 45.5
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 1.4e-41 175.3 154 61.0
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.1e-40 172.2 150 64.7
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 1.1e-38 165.6 121 66.1
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.2e-34 152.1 285 38.2
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 2.0e-32 144.8 154 51.9
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 7.2e-27 126.3 155 47.7
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.3e-25 121.3 94 62.8
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 2.4e-22 111.3 166 37.3
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 1.6e-21 108.6 180 36.7
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 3.6e-18 97.4 99 54.5
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 1.7e-15 88.6 69 56.5
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.8e-14 85.1 95 55.8
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 1.5e-08 65.5 39 69.2
Potri.002G029900 Populus trichocarpa HOM05D004346 ORTHO05D005153 4.1e-06 57.4 242 26.9
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 5.4e-06 57.0 138 29.7
Cre13.g585651 Chlamydomonas reinhardtii HOM05D004583 ORTHO05D005469 7.0e-06 56.6 62 50.0
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 9.2e-06 56.2 37 64.9
Sabra02G0023800 Salix brachista HOM05D004346 ORTHO05D005153 9.2e-06 56.2 242 26.4


User provided reference genes

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