Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 1.7e-51 205.7 102 100.0
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 4.2e-26 121.3 89 70.8
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 7.2e-26 120.6 87 71.3
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 1.2e-25 119.8 87 72.4
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 1.2e-25 119.8 86 72.1
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 4.0e-24 114.8 87 69.0
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 2.2e-22 109.0 87 64.4
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 1.4e-21 106.3 84 63.1
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 2.4e-21 105.5 87 63.2
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 4.1e-21 104.8 87 62.1
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 4.1e-21 104.8 87 62.1
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 9.2e-21 103.6 87 59.8
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 1.2e-20 103.2 87 62.1
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 8.6e-19 97.1 82 57.3
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 4.3e-18 94.7 84 60.7
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 3.6e-17 91.7 81 59.3
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 4.7e-17 91.3 83 57.8
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 1.0e-16 90.1 81 58.0
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 1.8e-16 89.4 81 56.8
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 5.2e-16 87.8 81 55.6
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 5.2e-16 87.8 88 54.5
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 6.8e-16 87.4 81 56.8
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 6.8e-16 87.4 81 54.3
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 8.9e-16 87.0 88 54.5
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 2.0e-15 85.9 86 53.5
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 2.0e-15 85.9 84 53.6
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 2.6e-15 85.5 81 56.8
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 3.4e-15 85.1 81 53.1
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 3.4e-15 85.1 84 54.8
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 4.4e-15 84.7 84 54.8
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 4.4e-15 84.7 86 53.5
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 4.4e-15 84.7 84 54.8
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 5.8e-15 84.3 58 70.7
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 5.8e-15 84.3 81 54.3
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 7.5e-15 84.0 68 61.8
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 9.8e-15 83.6 80 53.8
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 1.3e-14 83.2 81 53.1
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 1.3e-14 83.2 81 53.1
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 1.3e-14 83.2 84 51.2
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 1.7e-14 82.8 81 51.9
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 1.7e-14 82.8 82 52.4
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 2.2e-14 82.4 74 59.5
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 2.2e-14 82.4 86 50.0
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 2.2e-14 82.4 83 53.0
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 2.9e-14 82.0 82 50.0
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 2.9e-14 82.0 74 56.8
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 2.9e-14 82.0 59 64.4
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 4.9e-14 81.3 80 52.5
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 4.9e-14 81.3 84 53.6
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 4.9e-14 81.3 81 54.3
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 4.9e-14 81.3 81 54.3
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 6.4e-14 80.9 86 50.0
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 6.4e-14 80.9 86 50.0
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 8.3e-14 80.5 81 51.9
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 8.3e-14 80.5 84 50.0
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 1.1e-13 80.1 71 56.3
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 1.1e-13 80.1 84 51.2
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 1.1e-13 80.1 71 57.7
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 1.4e-13 79.7 83 48.2
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 1.4e-13 79.7 83 48.2
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 1.4e-13 79.7 60 68.3
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 1.4e-13 79.7 58 67.2
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 1.8e-13 79.3 83 47.0
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 1.8e-13 79.3 63 66.7
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 2.4e-13 79.0 85 52.9
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 3.2e-13 78.6 87 50.6
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 3.2e-13 78.6 84 47.6
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 3.2e-13 78.6 84 51.2
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 5.4e-13 77.8 61 67.2
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 5.4e-13 77.8 81 46.9
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 5.4e-13 77.8 84 52.4
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 7.0e-13 77.4 83 50.6
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 7.0e-13 77.4 80 47.5
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 7.0e-13 77.4 83 51.8
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 9.2e-13 77.0 83 45.8
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 9.2e-13 77.0 84 46.4
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 9.2e-13 77.0 84 50.0
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 9.2e-13 77.0 84 50.0
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 1.2e-12 76.6 79 46.8
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 1.2e-12 76.6 60 65.0
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 1.2e-12 76.6 66 60.6
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.6e-12 76.3 83 49.4
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.6e-12 76.3 83 49.4
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 1.6e-12 76.3 84 48.8
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 2.7e-12 75.5 71 50.7
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 2.7e-12 75.5 71 50.7
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 2.7e-12 75.5 83 43.4
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 4.6e-12 74.7 68 51.5
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 4.6e-12 74.7 71 49.3
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 4.6e-12 74.7 80 46.2
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 6.0e-12 74.3 83 44.6
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 1.7e-11 72.8 71 47.9
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 1.7e-11 72.8 86 44.2
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 3.0e-11 72.0 81 49.4
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 5.0e-11 71.2 56 62.5
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 1.1e-10 70.1 65 55.4
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 5.6e-10 67.8 65 53.8
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 2.8e-09 65.5 56 57.1
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 2.8e-09 65.5 56 55.4
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 4.7e-09 64.7 56 57.1
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 6.2e-09 64.3 56 55.4
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 8.0e-09 63.9 66 50.0
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 1.8e-08 62.8 59 55.9
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 3.1e-08 62.0 59 52.5
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 3.1e-08 62.0 59 54.2
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 3.1e-08 62.0 59 52.5
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 3.1e-08 62.0 65 49.2
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 8.9e-08 60.5 59 50.8


User provided reference genes

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