Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 8.2e-82 307.0 153 100.0
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 5.1e-68 261.2 146 84.2
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 5.9e-64 247.7 143 83.2
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 1.1e-57 226.9 147 75.5
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 1.1e-54 216.9 153 70.6
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 1.5e-54 216.5 153 71.9
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 3.2e-54 215.3 153 71.9
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 4.7e-53 211.5 154 71.4
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 1.8e-52 209.5 154 71.4
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 9.8e-51 203.8 157 68.8
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.2e-45 186.8 114 79.8
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 1.2e-43 180.3 147 58.5
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 8.3e-42 174.1 149 58.4
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 9.2e-41 170.6 144 58.3
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 1.2e-40 170.2 153 52.9
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 1.2e-40 170.2 147 55.1
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 1.3e-39 166.8 156 55.8
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 2.3e-39 166.0 151 56.3
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 2.9e-39 165.6 156 53.8
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 5.0e-39 164.9 147 52.4
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 8.6e-39 164.1 154 55.2
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 8.6e-39 164.1 149 53.7
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.1e-38 163.7 145 57.2
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 1.9e-38 162.9 147 52.4
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 3.3e-38 162.2 146 56.2
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 3.3e-38 162.2 146 57.5
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 4.3e-38 161.8 145 60.7
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 4.3e-38 161.8 142 58.5
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 7.3e-38 161.0 154 51.3
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 7.3e-38 161.0 146 53.4
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 7.3e-38 161.0 147 53.1
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 1.2e-37 160.2 143 55.9
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 1.2e-37 160.2 156 55.1
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 1.2e-37 160.2 142 54.9
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 1.6e-37 159.8 144 52.8
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 3.6e-37 158.7 143 55.2
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 4.7e-37 158.3 154 58.4
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 4.7e-37 158.3 145 59.3
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 6.1e-37 157.9 135 56.3
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 8.0e-37 157.5 156 53.8
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 1.4e-36 156.8 151 55.0
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.8e-36 156.4 135 56.3
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.8e-36 156.4 139 56.1
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 2.3e-36 156.0 148 55.4
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 2.3e-36 156.0 148 55.4
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 2.3e-36 156.0 154 53.9
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 4.0e-36 155.2 151 51.7
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 5.2e-36 154.8 145 57.2
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 2.0e-35 152.9 146 57.5
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 4.4e-35 151.8 144 52.8
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 7.5e-35 151.0 144 53.5
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 9.8e-35 150.6 144 50.0
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 9.8e-35 150.6 152 55.3
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 1.3e-34 150.2 142 52.1
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 1.3e-34 150.2 153 49.7
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 1.3e-34 150.2 143 51.7
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 1.3e-34 150.2 144 53.5
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 1.7e-34 149.8 152 54.6
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 1.7e-34 149.8 144 54.9
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.7e-34 148.7 144 52.8
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 4.9e-34 148.3 143 53.8
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 1.1e-33 147.1 147 51.0
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 1.1e-33 147.1 144 51.4
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 1.1e-33 147.1 144 51.4
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 1.4e-33 146.7 142 52.8
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 3.2e-33 145.6 144 48.6
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 3.2e-33 145.6 144 49.3
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.2e-33 145.6 143 47.6
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 3.2e-33 145.6 146 52.1
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 4.1e-33 145.2 144 49.3
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 5.4e-33 144.8 143 48.3
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 5.4e-33 144.8 144 50.7
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 7.0e-33 144.4 143 47.6
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 9.2e-33 144.1 151 51.7
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.2e-32 143.7 143 47.6
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 2.0e-32 142.9 151 50.3
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.0e-32 142.9 138 54.3
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 3.5e-32 142.1 144 46.5
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.5e-32 142.1 154 46.8
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 5.9e-32 141.4 139 49.6
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.3e-31 140.2 150 46.0
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 1.3e-31 140.2 140 55.0
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 3.0e-31 139.0 144 46.5
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 3.9e-31 138.7 143 53.1
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 5.0e-31 138.3 140 50.0
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 5.0e-31 138.3 151 48.3
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 6.6e-31 137.9 152 46.7
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 1.1e-30 137.1 143 44.8
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 1.1e-30 137.1 144 48.6
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 1.5e-30 136.7 143 47.6
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 2.5e-30 136.0 150 47.3
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.2e-29 133.7 141 49.6
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 1.6e-29 133.3 144 49.3
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 2.1e-29 132.9 151 49.0
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 4.7e-29 131.7 132 50.8
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 4.7e-29 131.7 143 44.8
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 6.2e-29 131.3 135 49.6
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 2.3e-28 129.4 133 49.6
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 8.9e-28 127.5 152 49.3
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 1.5e-27 126.7 150 44.0
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 5.8e-27 124.8 114 56.1
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 9.8e-27 124.0 145 46.2
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.3e-26 123.6 142 45.8
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 3.7e-26 122.1 153 43.1
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.1e-25 120.6 150 45.3
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.4e-25 120.2 151 42.4
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 9.2e-25 117.5 144 43.8
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 2.0e-24 116.3 143 43.4
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 3.5e-24 115.5 135 45.2
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 9.5e-22 107.5 142 38.7
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 9.5e-22 107.5 154 35.1
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 2.1e-21 106.3 145 44.1
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 8.1e-21 104.4 130 41.5
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 5.2e-20 101.7 96 56.2
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 2.6e-19 99.4 180 33.9
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 3.4e-19 99.0 69 65.2
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 4.4e-19 98.6 130 40.0
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 4.4e-19 98.6 130 40.0
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 9.8e-19 97.4 155 43.2
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 1.7e-18 96.7 114 44.7
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 2.2e-18 96.3 110 47.3
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 1.9e-17 93.2 94 42.6
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 5.4e-17 91.7 106 44.3
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 1.6e-16 90.1 83 53.0
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.7e-15 86.7 116 41.4
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.3e-12 76.3 70 50.0
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 3.1e-12 75.9 97 42.3
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 1.1e-09 67.4 67 49.3
MBI09_g45000_MAGBIO Magnolia biondii HOM05D005242 ORTHO05D006778 7.1e-09 64.7 72 43.1
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 2.7e-08 62.8 69 42.0
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 5.1e-07 58.5 60 53.3
Nn1g06075 Nelumbo nucifera HOM05D005242 ORTHO05D006778 1.1e-06 57.4 53 52.8
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.9e-06 56.6 139 28.1


User provided reference genes

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