Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 2.5e-159 565.5 299 100.0
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 3.3e-34 149.8 262 38.9
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.3e-27 127.9 265 33.2
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 3.0e-27 126.7 263 31.9
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.0e-27 126.7 263 32.7
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.0e-27 126.7 263 32.7
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 3.9e-27 126.3 263 32.3
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 3.9e-27 126.3 263 34.2
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 3.9e-27 126.3 271 34.7
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 5.1e-27 125.9 263 32.3
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 5.1e-27 125.9 261 32.2
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 6.6e-27 125.6 263 34.2
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 1.1e-26 124.8 272 32.4
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 1.1e-26 124.8 264 33.3
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 1.5e-26 124.4 266 33.1
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-26 124.0 263 32.3
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 2.5e-26 123.6 264 33.0
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 2.5e-26 123.6 264 33.0
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 2.5e-26 123.6 259 32.8
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.5e-26 123.6 276 31.2
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 2.5e-26 123.6 263 33.5
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 3.3e-26 123.2 265 33.2
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 3.3e-26 123.2 263 31.6
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 3.3e-26 123.2 263 32.3
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 5.6e-26 122.5 263 33.8
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 7.3e-26 122.1 263 33.5
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 7.3e-26 122.1 264 33.3
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 9.5e-26 121.7 265 32.8
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 9.5e-26 121.7 265 31.3
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 1.2e-25 121.3 264 33.0
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.2e-25 121.3 264 33.3
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 1.2e-25 121.3 263 32.3
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 1.6e-25 120.9 264 33.0
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 1.6e-25 120.9 264 33.0
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.6e-25 120.9 267 32.6
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.6e-25 120.9 269 32.7
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 1.6e-25 120.9 269 33.1
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 1.6e-25 120.9 265 32.8
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 2.1e-25 120.6 264 32.2
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 2.1e-25 120.6 263 33.1
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 2.1e-25 120.6 264 31.8
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 2.1e-25 120.6 234 35.5
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.8e-25 120.2 262 31.3
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 2.8e-25 120.2 262 31.7
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 2.8e-25 120.2 263 32.3
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 2.8e-25 120.2 263 32.3
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 3.6e-25 119.8 265 32.1
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 3.6e-25 119.8 263 32.7
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 3.6e-25 119.8 260 32.7
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 4.7e-25 119.4 266 32.3
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 4.7e-25 119.4 266 32.3
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 4.7e-25 119.4 266 32.3
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 4.7e-25 119.4 264 32.6
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 4.7e-25 119.4 260 32.3
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 6.2e-25 119.0 274 31.4
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 6.2e-25 119.0 261 31.8
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 8.1e-25 118.6 262 34.0
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 8.1e-25 118.6 262 30.5
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 8.1e-25 118.6 260 31.5
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 1.1e-24 118.2 262 34.7
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-24 118.2 264 32.2
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.1e-24 118.2 261 31.0
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 1.4e-24 117.9 265 32.5
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-24 117.9 265 32.5
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.4e-24 117.9 261 31.8
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 1.4e-24 117.9 263 31.6
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 1.4e-24 117.9 263 32.3
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.4e-24 117.9 261 32.2
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 1.8e-24 117.5 264 31.8
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 1.8e-24 117.5 266 32.3
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-24 117.5 265 32.5
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 1.8e-24 117.5 265 32.5
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.8e-24 117.5 264 31.4
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 1.8e-24 117.5 261 31.0
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 2.3e-24 117.1 263 30.0
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.3e-24 117.1 260 31.2
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 2.3e-24 117.1 263 31.6
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 2.3e-24 117.1 264 31.8
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 2.3e-24 117.1 263 33.5
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 2.3e-24 117.1 264 31.4
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 3.1e-24 116.7 260 31.9
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 3.1e-24 116.7 270 32.6
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 3.1e-24 116.7 264 31.8
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 3.1e-24 116.7 263 31.6
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 3.1e-24 116.7 264 32.2
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 4.0e-24 116.3 260 32.3
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 4.0e-24 116.3 260 31.9
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 5.2e-24 115.9 270 30.4
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 5.2e-24 115.9 268 32.8
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 5.2e-24 115.9 265 29.4
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 6.8e-24 115.5 261 32.2
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 6.8e-24 115.5 261 33.0
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 6.8e-24 115.5 273 30.0
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 8.9e-24 115.2 262 31.3
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 8.9e-24 115.2 264 31.8
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 8.9e-24 115.2 262 32.4
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.2e-23 114.8 260 31.5
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 1.2e-23 114.8 265 29.8
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 2.0e-23 114.0 268 30.6
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.0e-23 114.0 263 30.4
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 2.0e-23 114.0 261 31.4
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 2.6e-23 113.6 263 31.6
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 3.4e-23 113.2 263 29.3
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 5.8e-23 112.5 273 30.8
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 9.9e-23 111.7 268 30.2
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.3e-22 111.3 276 30.8
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 1.3e-22 111.3 184 35.9
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 1.3e-22 111.3 262 30.2
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.3e-22 111.3 264 30.7
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 1.7e-22 110.9 264 31.8
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 2.2e-22 110.5 262 30.9
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 2.9e-22 110.2 306 29.1
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 3.7e-22 109.8 264 30.3
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 6.4e-22 109.0 262 31.3
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 8.3e-22 108.6 269 30.5
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 1.1e-21 108.2 272 31.2
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 1.9e-21 107.5 280 30.0
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 5.4e-21 105.9 254 31.1
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 5.4e-21 105.9 263 29.3
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 3.5e-20 103.2 221 32.1
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 4.6e-20 102.8 263 29.7
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 6.0e-20 102.4 276 29.3
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 6.0e-20 102.4 265 30.9
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.3e-19 101.3 294 28.6
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 6.6e-19 99.0 281 28.1
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.2e-15 88.2 326 27.3
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.6e-15 87.0 312 27.9
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 6.4e-14 82.4 239 29.3
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 8.4e-14 82.0 240 30.4
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 1.4e-13 81.3 241 30.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 2.4e-13 80.5 164 37.2
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 3.2e-13 80.1 264 28.4
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-12 77.4 264 27.3
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 2.7e-12 77.0 238 28.6
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 2.7e-12 77.0 157 32.5
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 3.5e-12 76.6 355 22.3
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.6e-12 76.3 176 29.0
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 4.6e-12 76.3 176 29.0
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 1.0e-11 75.1 228 32.0
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.7e-11 74.3 212 29.2
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 3.9e-11 73.2 264 27.7
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 7.3e-10 68.9 264 26.5
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-09 67.4 262 27.9
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 6.9e-08 62.4 289 25.6
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 2.0e-07 60.8 126 34.1
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-07 59.7 263 27.0


User provided reference genes

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