Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1040s0010 Medicago truncatula HOM05D006555 ORTHO05D264670 3.7e-280 967.6 508 100.0
Sc20g0004830 Simmondsia chinensis HOM05D006555 ORTHO05D008376 4.6e-12 77.0 371 22.4
MSTRG.3197 Avicennia marina HOM05D006555 ORTHO05D008376 1.7e-11 75.1 388 24.5
Cc07_g02700 Coffea canephora HOM05D006555 ORTHO05D008376 3.9e-11 73.9 400 27.2
Sabra05G0090500 Salix brachista HOM05D006555 ORTHO05D008376 8.6e-11 72.8 426 22.5
GSVIVG01032551001 Vitis vinifera HOM05D006555 ORTHO05D008376 2.5e-10 71.2 440 24.8
THA.LOC104800651 Tarenaya hassleriana HOM05D006555 ORTHO05D008376 3.3e-10 70.9 412 26.0
CsaV3_3G041990 Cucumis sativus L. HOM05D006555 ORTHO05D008376 2.1e-09 68.2 400 25.8
Actinidia06047 Actinidia chinensis HOM05D006555 ORTHO05D008376 3.6e-09 67.4 400 22.0
MELO3C009917.2 Cucumis melo HOM05D006555 ORTHO05D008376 3.6e-09 67.4 457 24.3
unitig_746.g26576 Utricularia gibba HOM05D006555 ORTHO05D008376 3.6e-09 67.4 133 30.1
SMO270G0121 Selaginella moellendorffii HOM05D001632 ORTHO05D001534 4.7e-09 67.0 147 33.3
Sp7g02000 Schrenkiella parvula HOM05D006555 ORTHO05D008376 8.1e-09 66.2 133 28.6
CDE06G1454 Ceratophyllum demersum HOM05D006555 ORTHO05D008376 1.1e-08 65.9 133 27.8
COL.COLO4_34871 Corchorus olitorius HOM05D006555 ORTHO05D008376 1.1e-08 65.9 408 21.3
Mapoly0085s0089 Marchantia polymorpha HOM05D006555 ORTHO05D008376 1.1e-08 65.9 130 31.5
Nitab4.5_0001727g0060 Nicotiana tabacum HOM05D006555 ORTHO05D008376 1.1e-08 65.9 133 27.8
PGSC0003DMG400006943 Solanum tuberosum HOM05D006555 ORTHO05D008376 1.1e-08 65.9 133 27.8
BcaB06g27415 Brassica carinata HOM05D006555 ORTHO05D008376 1.4e-08 65.5 133 28.6
A04p12870 Brassica napus HOM05D006555 ORTHO05D008376 1.4e-08 65.5 133 28.6
C04p46570 Brassica napus HOM05D006555 ORTHO05D008376 1.4e-08 65.5 133 28.6
BolC4t26243H Brassica oleracea HOM05D006555 ORTHO05D008376 1.4e-08 65.5 133 28.6
BraA04t16950Z Brassica rapa HOM05D006555 ORTHO05D008376 1.4e-08 65.5 133 28.6
CARHR102570 Cardamine hirsuta HOM05D006555 ORTHO05D008376 1.4e-08 65.5 133 28.6
Thhalv10027647m.g Eutrema salsugineum HOM05D006555 ORTHO05D008376 1.4e-08 65.5 133 28.6
FvH4_6g49950 Fragaria vesca HOM05D006555 ORTHO05D008376 1.4e-08 65.5 133 28.6
FAN14G1052 Fragaria x ananassa HOM05D006555 ORTHO05D008376 1.4e-08 65.5 133 28.6
Hma1.2p1_0697F.1_g205130 Hydrangea macrophylla HOM05D006555 ORTHO05D008376 1.4e-08 65.5 395 23.0
Mapoly0001s0078 Marchantia polymorpha HOM05D001632 ORTHO05D001534 1.4e-08 65.5 445 27.0
ATR0712G064 Amborella trichopoda HOM05D006555 ORTHO05D008376 1.8e-08 65.1 133 28.6
SGA_v2.0_scaffold135G34829 Striga asiatica HOM05D006555 ORTHO05D008376 1.8e-08 65.1 133 27.1
AL3G42250 Arabidopsis lyrata HOM05D006555 ORTHO05D008376 2.3e-08 64.7 133 27.8
AT2G04620 Arabidopsis thaliana HOM05D006555 ORTHO05D008376 2.3e-08 64.7 133 27.8
CDE04G3747 Ceratophyllum demersum HOM05D006555 ORTHO05D008376 2.3e-08 64.7 133 27.1
FAN02G0929 Fragaria x ananassa HOM05D006555 ORTHO05D008376 2.3e-08 64.7 133 27.8
FAN09G1885 Fragaria x ananassa HOM05D006555 ORTHO05D008376 2.3e-08 64.7 133 27.8
Lj7P407T43 Lonicera japonica HOM05D006555 ORTHO05D008376 2.3e-08 64.7 379 21.6
MBI14_g15702_MAGBIO Magnolia biondii HOM05D006555 ORTHO05D008376 2.3e-08 64.7 133 27.1
Aqoxy3G03121 Aquilegia oxysepala HOM05D006555 ORTHO05D008376 3.1e-08 64.3 133 27.8
AUR62028128 Chenopodium quinoa HOM05D006555 ORTHO05D008376 3.1e-08 64.3 133 27.8
Ciclev10014254m.g Citrus clementina HOM05D006555 ORTHO05D008376 3.1e-08 64.3 393 26.2
FAN05G5565 Fragaria x ananassa HOM05D006555 ORTHO05D008376 3.1e-08 64.3 133 27.8
Gohir.D07G224400 Gossypium hirsutum HOM05D006555 ORTHO05D008376 3.1e-08 64.3 133 27.8
Gorai.001G258800 Gossypium raimondii HOM05D006555 ORTHO05D008376 3.1e-08 64.3 133 27.8
PSO832G4179 Papaver somniferum HOM05D006555 ORTHO05D008376 3.1e-08 64.3 136 28.7
Peaxi162Scf00368g00061 Petunia axillaris HOM05D006555 ORTHO05D008376 3.1e-08 64.3 133 27.8
CAN.G983.4 Capsicum annuum HOM05D006555 ORTHO05D008376 4.0e-08 63.9 133 27.1
Nn4g22926 Nelumbo nucifera HOM05D006555 ORTHO05D008376 4.0e-08 63.9 133 27.8
Nitab4.5_0003431g0010 Nicotiana tabacum HOM05D006555 ORTHO05D008376 4.0e-08 63.9 133 27.1
PSO013G0385 Papaver somniferum HOM05D006555 ORTHO05D008376 4.0e-08 63.9 136 28.7
SalBow1G4248 Salvia bowleyana HOM05D006555 ORTHO05D008376 4.0e-08 63.9 133 27.8
Solyc02g067620.3 Solanum lycopersicum HOM05D006555 ORTHO05D008376 4.0e-08 63.9 133 27.1
Sopen02g016730 Solanum pennellii HOM05D006555 ORTHO05D008376 4.0e-08 63.9 133 27.1
TAR629G0910 Trochodendron aralioides HOM05D006555 ORTHO05D008376 4.0e-08 63.9 133 27.8
HanXRQChr15g0474321 Helianthus annuus HOM05D006555 ORTHO05D008376 5.2e-08 63.5 133 27.1
Oeu060599.1 Olea europaea HOM05D006555 ORTHO05D008376 5.2e-08 63.5 133 27.8
Potri.005G110300 Populus trichocarpa HOM05D006555 ORTHO05D008376 5.2e-08 63.5 397 23.9
RcHm_v2.0_Chr2g0170121 Rosa chinensis HOM05D006555 ORTHO05D008376 5.2e-08 63.5 394 25.4
Atru.chr6.2154 Acer truncatum HOM05D006555 ORTHO05D008376 6.8e-08 63.2 133 27.1
Migut.H00171 Erythranthe guttata HOM05D006555 ORTHO05D008376 6.8e-08 63.2 133 27.1
EL10Ac3g05120 Beta vulgaris HOM05D006555 ORTHO05D008376 8.9e-08 62.8 133 26.3
CANSAT25G1964 Cannabis sativa HOM05D006555 ORTHO05D008376 8.9e-08 62.8 133 27.1
Gohir.A07G217400 Gossypium hirsutum HOM05D006555 ORTHO05D008376 8.9e-08 62.8 133 27.1
Prupe.3G277100 Prunus persica HOM05D006555 ORTHO05D008376 8.9e-08 62.8 133 27.8
TPR.G27718 Trifolium pratense HOM05D006555 ORTHO05D008376 8.9e-08 62.8 133 27.8
Ah.01g015770 Amaranthus hybridus HOM05D006555 ORTHO05D008376 1.2e-07 62.4 133 26.3
Eucgr.J01747 Eucalyptus grandis HOM05D006555 ORTHO05D008376 1.2e-07 62.4 136 29.4
SEGI_26593 Sequoiadendron giganteum HOM05D006555 ORTHO05D008376 1.2e-07 62.4 120 30.0
ClCG10G014600 Citrullus lanatus HOM05D006555 ORTHO05D008376 1.5e-07 62.0 133 26.3
DCAR_011190 Daucus carota HOM05D006555 ORTHO05D008376 1.5e-07 62.0 133 27.1
Duzib187G0608 Durio zibethinus HOM05D006555 ORTHO05D008376 1.5e-07 62.0 133 26.3
Lsat_1_v5_gn_0_24261 Lactuca sativa HOM05D006555 ORTHO05D008376 1.5e-07 62.0 133 27.1
MD17G1042100 Malus domestica HOM05D006555 ORTHO05D008376 1.5e-07 62.0 133 27.1
Manes.17G119457 Manihot esculenta HOM05D006555 ORTHO05D008376 1.5e-07 62.0 133 26.3
Medtr6g463330 Medicago truncatula HOM05D006555 ORTHO05D008376 1.5e-07 62.0 136 29.4
Psat1g109920 Pisum sativum HOM05D006555 ORTHO05D008376 1.5e-07 62.0 136 29.4
PGR142G2543 Punica granatum HOM05D006555 ORTHO05D008376 1.5e-07 62.0 133 26.3
Aa31LG9G1580 Aethionema arabicum HOM05D006555 ORTHO05D008376 2.0e-07 61.6 133 27.1
Ca_19526_v3 Cicer arietinum L. HOM05D006555 ORTHO05D008376 2.0e-07 61.6 136 28.7
Sed0015102 Sechium edule HOM05D006555 ORTHO05D008376 2.0e-07 61.6 133 25.6
HPP92_002811 Vanilla planifolia HOM05D006555 ORTHO05D008376 2.0e-07 61.6 143 25.9
HPP92_002867 Vanilla planifolia HOM05D006555 ORTHO05D008376 2.0e-07 61.6 143 25.9
Cfa007479 Carpinus fangiana HOM05D006555 ORTHO05D008376 2.6e-07 61.2 133 26.3
TAR371G0356 Trochodendron aralioides HOM05D006555 ORTHO05D008376 2.6e-07 61.2 133 26.3
arahy.Tifrunner.gnm1.ann1.LDE0EK Arachis hypogaea HOM05D006555 ORTHO05D008376 3.4e-07 60.8 406 23.4
ECA246G4860 Erigeron canadensis HOM05D006555 ORTHO05D008376 3.4e-07 60.8 133 25.6
Phvul.002G176300 Phaseolus vulgaris HOM05D006555 ORTHO05D008376 3.4e-07 60.8 136 29.4
Sed0024496 Sechium edule HOM05D006555 ORTHO05D008376 3.4e-07 60.8 133 26.3
TWI56G0535 Tripterygium wilfordii HOM05D006555 ORTHO05D008376 3.4e-07 60.8 133 24.8
Zm00001eb041980 Zea mays HOM05D006555 ORTHO05D008376 3.4e-07 60.8 407 21.9
Actinidia36057 Actinidia chinensis HOM05D006555 ORTHO05D008376 4.4e-07 60.5 117 29.1
QL02p078549 Quercus lobata HOM05D006555 ORTHO05D008376 5.8e-07 60.1 133 25.6
RhsimUnG0168200 Rhododendron simsii HOM05D006555 ORTHO05D008376 5.8e-07 60.1 117 29.1
SMO367G0102 Selaginella moellendorffii HOM05D001632 ORTHO05D001534 5.8e-07 60.1 132 31.1
CBR_g8910 Chara braunii HOM05D006555 ORTHO05D008376 7.6e-07 59.7 122 29.5
Dinv35011 Davidia involucrata HOM05D006555 ORTHO05D008376 7.6e-07 59.7 429 24.2
Thecc.04G067100 Theobroma cacao HOM05D006555 ORTHO05D008376 7.6e-07 59.7 465 22.2
Glyma.08G102000 Glycine max HOM05D006555 ORTHO05D008376 9.9e-07 59.3 431 25.1
AUR62005932 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.3e-06 58.9 370 21.6
AUR62005935 Chenopodium quinoa HOM05D006555 ORTHO05D008376 1.3e-06 58.9 370 21.6
Lj2g0012787 Lotus japonicus HOM05D006555 ORTHO05D008376 1.3e-06 58.9 136 27.9
Mapoly0046s0119 Marchantia polymorpha HOM05D001632 ORTHO05D001534 1.3e-06 58.9 389 23.4
Lalb_Chr04g0258611 Lupinus albus HOM05D006555 ORTHO05D008376 1.7e-06 58.5 133 25.6
VMungo0251G3141 Vigna mungo HOM05D006555 ORTHO05D008376 1.7e-06 58.5 136 28.7
Haze_14619 Corylus avellana HOM05D006555 ORTHO05D008376 2.9e-06 57.8 378 21.7
Mapoly0059s0099 Marchantia polymorpha HOM05D001632 ORTHO05D001534 2.9e-06 57.8 420 26.7
SMO141G0163 Selaginella moellendorffii HOM05D006555 ORTHO05D008376 3.7e-06 57.4 125 29.6
Zm00001eb179160 Zea mays HOM05D006555 ORTHO05D008376 3.7e-06 57.4 398 22.9
Duzib147G0944 Durio zibethinus HOM05D006555 ORTHO05D008376 8.4e-06 56.2 122 27.0
Lsat_1_v5_gn_6_82880 Lactuca sativa HOM05D001632 ORTHO05D001534 8.4e-06 56.2 124 30.6


User provided reference genes

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