Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1029s0010 Medicago truncatula HOM05D000018 ORTHO05D021483 6.5e-20 99.8 50 100.0
Medtr1033s0010 Medicago truncatula HOM05D000018 ORTHO05D021483 6.5e-20 99.8 50 100.0
Medtr3g063180 Medicago truncatula HOM05D000018 ORTHO05D008577 8.5e-12 72.8 38 94.7
Glyma.11G202600 Glycine max HOM05D000018 ORTHO05D008577 1.9e-11 71.6 38 89.5
Phvul.006G083200 Phaseolus vulgaris HOM05D000018 ORTHO05D008577 1.9e-11 71.6 38 89.5
VMungo0540G2221 Vigna mungo HOM05D000018 ORTHO05D008577 2.5e-11 71.2 38 89.5
TPR.G37381 Trifolium pratense HOM05D000018 ORTHO05D008577 4.2e-11 70.5 38 89.5
Glyma.18G048300 Glycine max HOM05D000018 ORTHO05D008577 9.4e-11 69.3 38 89.5
arahy.Tifrunner.gnm1.ann1.HP8L6T Arachis hypogaea HOM05D000018 ORTHO05D008577 1.6e-10 68.6 38 84.2
arahy.Tifrunner.gnm1.ann1.3ZA78K Arachis hypogaea HOM05D035101 ORTHO05D021483 2.1e-10 68.2 38 84.2
Psat5g146680 Pisum sativum HOM05D000018 ORTHO05D008577 2.7e-10 67.8 38 86.8
arahy.Tifrunner.gnm1.ann1.JK36JM Arachis hypogaea HOM05D000018 ORTHO05D008577 6.1e-10 66.6 38 81.6
Lj6g0027835 Lotus japonicus HOM05D000018 ORTHO05D008577 6.1e-10 66.6 38 81.6
Ca_15097_v3 Cicer arietinum L. HOM05D000018 ORTHO05D008577 7.9e-10 66.2 38 84.2
Lalb_Chr18g0053971 Lupinus albus HOM05D000018 ORTHO05D008577 1.8e-09 65.1 38 78.9
Atru.chr8.1037 Acer truncatum HOM05D000018 ORTHO05D008577 7.4e-08 59.7 38 71.1
Aa31LG2G12360 Aethionema arabicum HOM05D000018 ORTHO05D008577 9.7e-08 59.3 38 73.7
Cfa010954 Carpinus fangiana HOM05D000018 ORTHO05D008577 1.3e-07 58.9 39 71.8
Eucgr.B01527 Eucalyptus grandis HOM05D000018 ORTHO05D008577 2.2e-07 58.2 38 71.1
Gohir.A01G060700 Gossypium hirsutum HOM05D000018 ORTHO05D008577 2.2e-07 58.2 36 72.2
Gorai.002G066700 Gossypium raimondii HOM05D000018 ORTHO05D008577 2.2e-07 58.2 36 75.0
Dinv06252 Davidia involucrata HOM05D000018 ORTHO05D008577 2.8e-07 57.8 38 71.1
Dinv15526 Davidia involucrata HOM05D000018 ORTHO05D008577 2.8e-07 57.8 38 71.1
Cfa019816 Carpinus fangiana HOM05D000018 ORTHO05D021483 3.7e-07 57.4 36 72.2
FvH4_6g39151 Fragaria vesca HOM05D000018 ORTHO05D008577 3.7e-07 57.4 36 72.2
FAN05G1045 Fragaria x ananassa HOM05D000018 ORTHO05D008577 3.7e-07 57.4 36 72.2
FAN09G0763 Fragaria x ananassa HOM05D000018 ORTHO05D008577 3.7e-07 57.4 36 72.2
FAN14G4789 Fragaria x ananassa HOM05D000018 ORTHO05D008577 3.7e-07 57.4 36 72.2
MD09G1144700 Malus domestica HOM05D000018 ORTHO05D008577 3.7e-07 57.4 37 73.0
RcHm_v2.0_Chr2g0152971 Rosa chinensis HOM05D000018 ORTHO05D008577 3.7e-07 57.4 36 72.2
TWI32G0578 Tripterygium wilfordii HOM05D000018 ORTHO05D008577 3.7e-07 57.4 38 73.7
Ciclev10012063m.g Citrus clementina HOM05D000018 ORTHO05D008577 4.8e-07 57.0 35 77.1
QL09p020541 Quercus lobata HOM05D000018 ORTHO05D008577 6.3e-07 56.6 39 71.8
FAN02G4377 Fragaria x ananassa HOM05D000018 ORTHO05D008577 8.2e-07 56.2 36 69.4
CANSAT54G0470 Cannabis sativa HOM05D000018 ORTHO05D008577 1.1e-06 55.8 38 68.4
Sabra11G0015100 Salix brachista HOM05D000018 ORTHO05D008577 1.1e-06 55.8 38 71.1
Cpa.g.sc146.35 Carica papaya HOM05D000018 ORTHO05D008577 1.8e-06 55.1 38 68.4
Manes.16G000500 Manihot esculenta HOM05D000018 ORTHO05D008577 1.8e-06 55.1 39 66.7
CiPaw.06G002600 Carya illinoinensis HOM05D000018 ORTHO05D008577 3.1e-06 54.3 39 64.1
Thecc.07G099000 Theobroma cacao HOM05D000018 ORTHO05D008577 3.1e-06 54.3 38 63.2
Haze_02985 Corylus avellana HOM05D000018 ORTHO05D008577 4.1e-06 53.9 35 71.4
Nn1g09857 Nelumbo nucifera HOM05D000018 ORTHO05D008577 5.3e-06 53.5 39 64.1
Potri.011G024100 Populus trichocarpa HOM05D000018 ORTHO05D008577 5.3e-06 53.5 38 68.4
THA.LOC104806661 Tarenaya hassleriana HOM05D000018 ORTHO05D008577 5.3e-06 53.5 38 63.2
CsaV3_4G007200 Cucumis sativus L. HOM05D000018 ORTHO05D008577 7.0e-06 53.1 37 62.2
TAR624G0388 Trochodendron aralioides HOM05D000018 ORTHO05D008577 7.0e-06 53.1 38 65.8
TAR624G0490 Trochodendron aralioides HOM05D000018 ORTHO05D008577 7.0e-06 53.1 38 65.8
EL10Ac6g15328 Beta vulgaris HOM05D000018 ORTHO05D008577 9.1e-06 52.8 36 69.4
vmacro03178 Vaccinium macrocarpon HOM05D000018 ORTHO05D008577 9.1e-06 52.8 38 63.2


User provided reference genes

Program Settings