Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 7.5e-43 176.8 90 100.0
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 7.5e-43 176.8 90 100.0
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 1.5e-30 136.0 100 76.0
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 4.0e-28 127.9 112 69.6
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 5.2e-28 127.5 113 65.5
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 1.1e-22 109.8 96 62.5
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 4.3e-22 107.8 90 67.8
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 6.8e-20 100.5 58 77.6
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.5e-19 99.4 76 65.8
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 2.0e-19 99.0 74 66.2
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.6e-19 98.6 76 65.8
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 2.6e-19 98.6 76 65.8
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.6e-19 98.6 78 67.9
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 3.4e-19 98.2 46 91.3
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 3.4e-19 98.2 74 66.2
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 4.4e-19 97.8 55 81.8
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 4.4e-19 97.8 46 91.3
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 4.4e-19 97.8 46 91.3
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 4.4e-19 97.8 46 87.0
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 4.4e-19 97.8 76 65.8
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 4.4e-19 97.8 76 65.8
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 4.4e-19 97.8 91 59.3
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 5.8e-19 97.4 90 57.8
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 5.8e-19 97.4 72 63.9
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 5.8e-19 97.4 59 71.2
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 5.8e-19 97.4 93 59.1
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 7.6e-19 97.1 90 60.0
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 9.9e-19 96.7 82 61.0
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 9.9e-19 96.7 46 89.1
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 1.3e-18 96.3 90 56.7
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 1.3e-18 96.3 57 78.9
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 1.7e-18 95.9 72 63.9
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 1.7e-18 95.9 93 55.9
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 1.7e-18 95.9 72 69.4
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.2e-18 95.5 59 71.2
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 2.2e-18 95.5 82 58.5
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.2e-18 95.5 82 58.5
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 2.2e-18 95.5 66 68.2
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 2.2e-18 95.5 89 59.6
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 2.2e-18 95.5 57 80.7
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 2.2e-18 95.5 71 66.2
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 2.9e-18 95.1 46 89.1
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 2.9e-18 95.1 66 66.7
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 2.9e-18 95.1 67 64.2
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 2.9e-18 95.1 90 60.0
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.9e-18 95.1 64 70.3
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 2.9e-18 95.1 75 62.7
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 2.9e-18 95.1 77 62.3
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.9e-18 95.1 77 61.0
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 3.8e-18 94.7 72 63.9
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 3.8e-18 94.7 90 57.8
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 3.8e-18 94.7 69 68.1
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.8e-18 94.7 61 73.8
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 4.9e-18 94.4 75 62.7
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 4.9e-18 94.4 46 84.8
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 4.9e-18 94.4 89 56.2
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 4.9e-18 94.4 77 61.0
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 4.9e-18 94.4 76 63.2
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 4.9e-18 94.4 68 64.7
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 4.9e-18 94.4 82 58.5
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 6.4e-18 94.0 72 62.5
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 6.4e-18 94.0 72 62.5
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 6.4e-18 94.0 82 57.3
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 6.4e-18 94.0 93 55.9
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 6.4e-18 94.0 83 61.4
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 6.4e-18 94.0 72 65.3
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 6.4e-18 94.0 57 73.7
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 6.4e-18 94.0 57 73.7
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 8.4e-18 93.6 58 75.9
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 8.4e-18 93.6 90 56.7
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 8.4e-18 93.6 77 59.7
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 1.1e-17 93.2 72 66.7
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 1.1e-17 93.2 82 59.8
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 1.1e-17 93.2 46 84.8
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 1.1e-17 93.2 46 84.8
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 1.1e-17 93.2 66 66.7
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.1e-17 93.2 90 58.9
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 1.1e-17 93.2 68 67.6
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.4e-17 92.8 76 64.5
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 1.4e-17 92.8 91 58.2
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 1.9e-17 92.4 49 81.6
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.9e-17 92.4 68 69.1
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.9e-17 92.4 82 59.8
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 1.9e-17 92.4 90 56.7
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 2.4e-17 92.0 74 62.2
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 2.4e-17 92.0 52 75.0
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 2.4e-17 92.0 82 61.0
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 2.4e-17 92.0 51 76.5
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.4e-17 92.0 72 65.3
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 3.2e-17 91.7 82 61.0
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 3.2e-17 91.7 90 56.7
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 3.2e-17 91.7 88 53.4
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 3.2e-17 91.7 81 59.3
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 4.2e-17 91.3 46 82.6
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 5.4e-17 90.9 71 63.4
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 5.4e-17 90.9 51 76.5
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 5.4e-17 90.9 57 71.9
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 5.4e-17 90.9 88 53.4
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 7.1e-17 90.5 43 90.7
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 7.1e-17 90.5 90 52.2
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 7.1e-17 90.5 76 60.5
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 7.1e-17 90.5 75 62.7
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 7.1e-17 90.5 78 59.0
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 9.2e-17 90.1 45 84.4
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 9.2e-17 90.1 50 76.0
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 9.2e-17 90.1 90 56.7
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 9.2e-17 90.1 47 85.1
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 9.2e-17 90.1 77 61.0
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 1.2e-16 89.7 88 52.3
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 1.6e-16 89.4 94 54.3
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 1.6e-16 89.4 86 55.8
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.6e-16 89.4 90 54.4
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 1.6e-16 89.4 72 62.5
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 2.1e-16 89.0 72 59.7
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 2.1e-16 89.0 83 59.0
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 2.7e-16 88.6 94 52.1
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 2.7e-16 88.6 81 55.6
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 3.5e-16 88.2 80 58.8
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 4.6e-16 87.8 82 58.5
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 4.6e-16 87.8 82 54.9
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 6.0e-16 87.4 82 57.3
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 6.0e-16 87.4 90 52.2
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 7.8e-16 87.0 65 63.1
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 7.8e-16 87.0 65 63.1
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 7.8e-16 87.0 65 63.1
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 7.8e-16 87.0 69 59.4
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 7.8e-16 87.0 83 54.2
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 7.8e-16 87.0 83 57.8
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 7.8e-16 87.0 78 60.3
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.0e-15 86.7 90 53.3
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 1.3e-15 86.3 76 60.5
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.3e-15 86.3 85 56.5
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 1.3e-15 86.3 82 58.5
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.7e-15 85.9 57 71.9
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 1.7e-15 85.9 82 57.3
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 1.7e-15 85.9 45 77.8
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 2.3e-15 85.5 90 54.4
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 3.0e-15 85.1 83 56.6
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 3.9e-15 84.7 89 53.9
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 5.1e-15 84.3 42 81.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 1.1e-14 83.2 84 54.8
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.5e-14 82.8 84 53.6
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.5e-14 82.8 84 53.6
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 7.3e-14 80.5 82 56.1
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 9.6e-14 80.1 90 55.6
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 3.6e-13 78.2 65 63.1
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 6.2e-13 77.4 81 50.6
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.1e-13 77.0 78 53.8
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.1e-13 77.0 78 53.8
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 7.6e-11 70.5 80 47.5
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 1.3e-10 69.7 49 65.3
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 2.9e-10 68.6 56 60.7
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 5.6e-06 54.3 64 46.9


User provided reference genes

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