Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.6e-146 521.5 261 100.0
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 94.3
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 93.9
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 92.3
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 92.0
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 90.8
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 89.7
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 90.0
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 8.1e-130 467.2 261 90.0
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 89.3
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 89.3
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 89.3
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 88.9
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 88.9
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 88.5
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 88.9
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 88.5
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 2.6e-128 462.2 276 87.0
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 88.1
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 87.7
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-126 456.4 261 86.6
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.9e-126 456.1 260 86.9
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.9e-126 456.1 260 86.9
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 87.0
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 86.2
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 87.0
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 87.0
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.2e-125 453.4 259 86.9
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.2e-125 453.4 259 86.9
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 2.7e-125 452.2 260 86.2
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.5e-125 451.8 261 85.8
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 86.6
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 86.2
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 85.4
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 85.8
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.7e-124 449.5 261 85.8
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 3.0e-124 448.7 261 86.2
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 3.0e-124 448.7 261 84.7
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 86.2
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 84.3
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 8.6e-124 447.2 261 85.8
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 8.6e-124 447.2 260 85.8
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.1e-123 446.8 261 84.3
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.5e-123 446.4 261 85.4
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.5e-123 446.4 261 85.4
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 85.8
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 85.4
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 86.2
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 85.4
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 3.3e-123 445.3 260 85.8
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 85.4
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.3e-123 444.9 261 85.8
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 85.4
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 83.9
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 85.1
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 85.4
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 85.8
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 83.5
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 83.5
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 85.4
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 85.1
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 85.1
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 85.4
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 85.4
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 1.2e-122 443.4 264 85.6
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.6e-122 443.0 261 83.5
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.6e-122 443.0 261 85.8
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 2.1e-122 442.6 261 84.7
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.8e-122 442.2 261 84.7
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 2.8e-122 442.2 261 84.7
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.8e-122 442.2 261 84.7
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.6e-122 441.8 261 84.7
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 3.6e-122 441.8 258 85.7
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 3.6e-122 441.8 260 85.8
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 4.7e-122 441.4 261 83.9
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 4.7e-122 441.4 261 85.1
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 6.2e-122 441.0 261 83.5
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 6.2e-122 441.0 261 84.3
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 84.7
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 84.7
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 8.1e-122 440.7 285 79.6
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 1.1e-121 440.3 261 84.3
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.1e-121 440.3 261 83.5
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.4e-121 439.9 261 85.4
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.4e-121 439.9 261 83.1
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.8e-121 439.5 261 84.7
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.8e-121 439.5 261 84.7
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 2.4e-121 439.1 261 83.1
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 2.4e-121 439.1 261 84.7
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 2.4e-121 439.1 261 84.7
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 2.4e-121 439.1 261 83.1
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 3.1e-121 438.7 261 83.9
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 4.0e-121 438.3 260 84.2
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 5.2e-121 438.0 261 83.5
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 6.8e-121 437.6 261 83.5
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 6.8e-121 437.6 261 83.9
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 6.8e-121 437.6 261 84.3
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 8.9e-121 437.2 261 83.9
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.2e-120 436.8 261 83.9
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.2e-120 436.8 261 83.1
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 2.0e-120 436.0 261 82.8
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 2.0e-120 436.0 261 83.5
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 2.0e-120 436.0 261 83.5
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 2.0e-120 436.0 265 82.3
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 2.6e-120 435.6 260 83.1
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 3.4e-120 435.3 261 83.9
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 5.8e-120 434.5 261 83.1
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 5.8e-120 434.5 261 83.1
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 5.8e-120 434.5 261 83.1
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.8e-120 434.5 261 83.1
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 7.6e-120 434.1 261 82.8
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 7.6e-120 434.1 261 82.4
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 7.6e-120 434.1 261 82.8
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.3e-119 433.3 260 82.7
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 3.8e-119 431.8 261 84.7
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.1e-118 430.3 261 82.4
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 1.4e-118 429.9 261 82.0
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.9e-118 429.5 259 83.4
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 2.4e-118 429.1 269 81.0
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 3.2e-118 428.7 261 80.8
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 3.2e-118 428.7 261 82.0
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 7.1e-118 427.6 260 83.1
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 7.1e-118 427.6 256 82.8
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.3e-116 423.3 256 82.0
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 8.7e-116 420.6 261 80.5
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 3.3e-115 418.7 261 79.7
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.8e-114 414.8 277 77.3
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 6.2e-114 414.5 261 80.1
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 6.2e-114 414.5 261 80.1
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.2e-111 406.0 240 84.6
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 3.5e-109 398.7 211 91.5
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 7.9e-109 397.5 261 72.8
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 3.0e-108 395.6 261 74.3
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.5e-107 393.3 241 81.7
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 2.5e-107 392.5 261 75.1
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.3e-107 391.7 241 81.3
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 7.6e-104 380.9 201 90.0
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.7e-103 379.8 261 75.1
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 4.9e-103 378.3 266 74.1
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 4.2e-102 375.2 195 92.3
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 6.0e-101 371.3 222 84.2
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.3e-100 369.4 261 73.9
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 8.7e-100 367.5 252 76.2
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 4.8e-98 361.7 240 76.7
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 8.1e-98 360.9 309 65.7
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.5e-96 356.7 200 87.5
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 4.5e-96 355.1 261 71.6
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.5e-94 349.4 337 57.9
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 6.3e-90 334.7 260 63.5
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.8e-87 325.5 177 87.6
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 7.2e-86 321.2 256 68.4
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 5.7e-83 311.6 161 92.5
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 5.5e-70 268.5 229 60.7
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.8e-68 263.5 240 62.5
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 4.8e-58 228.8 113 96.5
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 5.9e-56 221.9 143 80.4
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 2.9e-55 219.5 142 79.6
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 9.1e-49 198.0 98 92.9
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.9e-46 190.3 135 74.1
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 2.8e-42 176.4 107 82.2
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 6.3e-42 175.3 196 52.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.0e-39 167.9 108 76.9
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 3.3e-38 162.9 135 63.0
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 3.6e-37 159.5 92 83.7
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.0e-36 156.4 270 43.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 5.7e-35 152.1 195 47.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 2.3e-31 140.2 106 73.6
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.4e-28 131.0 104 67.3
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.4e-28 131.0 101 73.3
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.7e-24 116.7 111 60.4
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 6.2e-13 79.0 81 55.6
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.1e-09 68.2 64 56.2
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.5e-08 63.2 42 78.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 7.8e-08 62.0 59 54.2
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 3.9e-07 59.7 34 82.4
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 5.1e-07 59.3 38 71.1
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 7.3e-06 55.5 34 76.5


User provided reference genes

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