Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0465s0020 Medicago truncatula HOM05D000003 ORTHO05D000006 7.1e-147 523.9 254 100.0
Medtr3g465440 Medicago truncatula HOM05D000425 ORTHO05D000373 7.8e-29 131.7 168 45.2
Medtr7g108440 Medicago truncatula HOM05D002777 ORTHO05D001516 1.2e-26 124.4 241 29.5
Medtr5g038810 Medicago truncatula HOM05D000439 ORTHO05D002302 2.9e-23 113.2 91 56.0
TPR.G27496 Trifolium pratense HOM05D000003 ORTHO05D000004 4.2e-14 82.8 355 22.0
Phvul.010G087401 Phaseolus vulgaris HOM05D000003 ORTHO05D000006 4.6e-13 79.3 87 44.8
Atru.chr3.1667 Acer truncatum HOM05D000003 ORTHO05D000004 1.0e-12 78.2 152 28.9
Glyma.10G082200 Glycine max HOM05D002777 ORTHO05D000006 2.3e-12 77.0 162 32.1
ECA236G3489 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.9e-12 76.3 155 29.0
Medtr2g089865 Medicago truncatula HOM05D000831 ORTHO05D000660 3.3e-11 73.2 176 29.0
Medtr4g054200 Medicago truncatula HOM05D008558 ORTHO05D000006 3.3e-11 73.2 165 29.7
Medtr1g018785 Medicago truncatula HOM05D000003 ORTHO05D000006 5.6e-11 72.4 106 44.3
Medtr6g016175 Medicago truncatula HOM05D000003 ORTHO05D000006 9.6e-11 71.6 236 28.0
Medtr7g057470 Medicago truncatula HOM05D000003 ORTHO05D000006 9.6e-11 71.6 217 25.3
Medtr7g057490 Medicago truncatula HOM05D000003 ORTHO05D000006 9.6e-11 71.6 217 25.3
Medtr0062s0080 Medicago truncatula HOM05D000003 ORTHO05D000006 2.1e-10 70.5 157 30.6
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 8.1e-10 68.6 161 28.0
Medtr0062s0050 Medicago truncatula HOM05D000003 ORTHO05D000006 1.1e-09 68.2 152 30.3
Medtr0938s0010 Medicago truncatula HOM05D000003 ORTHO05D000006 1.1e-09 68.2 152 30.3
ECA236G1308 Erigeron canadensis HOM05D000003 ORTHO05D000006 1.4e-09 67.8 277 19.9
Medtr3g026390 Medicago truncatula HOM05D000003 ORTHO05D000006 1.4e-09 67.8 87 42.5
Medtr6g048650 Medicago truncatula HOM05D000003 ORTHO05D000006 1.4e-09 67.8 87 39.1
SHI38768 Sapria himalayana HOM05D000024 ORTHO05D000006 1.8e-09 67.4 166 27.1
ECA240G3834 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.4e-09 67.0 226 23.5
HanXRQChr12g0376001 Helianthus annuus HOM05D000003 ORTHO05D000004 2.4e-09 67.0 73 42.5
Medtr6g048840 Medicago truncatula HOM05D000003 ORTHO05D000006 2.4e-09 67.0 103 35.9
HanXRQChr08g0227851 Helianthus annuus HOM05D000003 ORTHO05D000004 3.1e-09 66.6 242 22.7
Lj6g0001957 Lotus japonicus HOM05D002777 ORTHO05D000006 3.1e-09 66.6 86 39.5
Medtr0426s0010 Medicago truncatula HOM05D000003 ORTHO05D000006 3.1e-09 66.6 194 25.8
SHI41228 Sapria himalayana HOM05D000024 ORTHO05D000006 3.1e-09 66.6 173 24.3
ECA234G2109 Erigeron canadensis HOM05D000003 ORTHO05D000006 4.0e-09 66.2 166 25.9
SHI51241 Sapria himalayana HOM05D000024 ORTHO05D000006 4.0e-09 66.2 170 27.6
ECA246G1743 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.9e-09 65.5 155 28.4
HanXRQChr13g0401811 Helianthus annuus HOM05D000003 ORTHO05D000004 6.9e-09 65.5 51 56.9
Medtr6g048560 Medicago truncatula HOM05D000003 ORTHO05D000006 6.9e-09 65.5 74 43.2
CANSAT11G2283 Cannabis sativa HOM05D000003 ORTHO05D000004 9.0e-09 65.1 171 28.1
TPR.G32401 Trifolium pratense HOM05D000003 ORTHO05D000004 9.0e-09 65.1 85 40.0
Atru.chr4.104 Acer truncatum HOM05D000003 ORTHO05D000004 1.2e-08 64.7 216 24.5
HanXRQChr07g0206811 Helianthus annuus HOM05D000003 ORTHO05D000004 1.2e-08 64.7 242 22.3
QL01p030568 Quercus lobata HOM05D000003 ORTHO05D000006 1.2e-08 64.7 185 25.4
ECA236G4549 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.5e-08 64.3 56 48.2
CSS0028753 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 2.0e-08 63.9 175 25.7
Medtr1g040450 Medicago truncatula HOM05D000003 ORTHO05D000006 2.0e-08 63.9 168 31.5
Psat5g290720 Pisum sativum HOM05D000003 ORTHO05D000004 2.0e-08 63.9 80 36.2
QL07p015200 Quercus lobata HOM05D000003 ORTHO05D012891 2.0e-08 63.9 249 22.5
HanXRQChr05g0136121 Helianthus annuus HOM05D000003 ORTHO05D000004 2.6e-08 63.5 51 51.0
Medtr5g034955 Medicago truncatula HOM05D007807 ORTHO05D000006 2.6e-08 63.5 73 42.5
Psat1g154160 Pisum sativum HOM05D000003 ORTHO05D000004 2.6e-08 63.5 132 28.0
Psat5g138280 Pisum sativum HOM05D007807 ORTHO05D000006 3.4e-08 63.2 117 32.5
HanXRQChr09g0254861 Helianthus annuus HOM05D000003 ORTHO05D000004 4.5e-08 62.8 80 42.5
MBI12_g01747_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 4.5e-08 62.8 198 24.7
Medtr2g067570 Medicago truncatula HOM05D000003 ORTHO05D000006 4.5e-08 62.8 98 35.7
Medtr5g021380 Medicago truncatula HOM05D000003 ORTHO05D000006 4.5e-08 62.8 134 32.1
PSO131G0001 Papaver somniferum HOM05D000003 ORTHO05D000004 4.5e-08 62.8 170 26.5
QL04p042086 Quercus lobata HOM05D000003 ORTHO05D000006 4.5e-08 62.8 202 23.8
ECA233G1837 Erigeron canadensis HOM05D000003 ORTHO05D000004 5.8e-08 62.4 54 51.9
HanXRQChr04g0113211 Helianthus annuus HOM05D000003 ORTHO05D000004 5.8e-08 62.4 56 44.6
Medtr1g068728 Medicago truncatula HOM05D000003 ORTHO05D000006 5.8e-08 62.4 196 24.0
ECA247G3751 Erigeron canadensis HOM05D000003 ORTHO05D000004 7.6e-08 62.0 65 38.5
Medtr7g451000 Medicago truncatula HOM05D000003 ORTHO05D000006 7.6e-08 62.0 87 39.1
TAR549G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000004 9.9e-08 61.6 227 22.9
Atru.chr8.1018 Acer truncatum HOM05D000003 ORTHO05D000004 1.3e-07 61.2 93 35.5
CSS0005580 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 1.3e-07 61.2 70 45.7
CANSAT35G0246 Cannabis sativa HOM05D000003 ORTHO05D000004 1.3e-07 61.2 138 29.0
ECA246G4424 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.3e-07 61.2 56 39.3
HanXRQChr13g0391411 Helianthus annuus HOM05D000003 ORTHO05D000004 1.3e-07 61.2 89 37.1
ECA247G1879 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.7e-07 60.8 56 42.9
HanXRQChr02g0058101 Helianthus annuus HOM05D000997 ORTHO05D000828 1.7e-07 60.8 52 44.2
Medtr7g108760 Medicago truncatula HOM05D008558 ORTHO05D000006 1.7e-07 60.8 75 38.7
Medtr8g058470 Medicago truncatula HOM05D008558 ORTHO05D000006 1.7e-07 60.8 75 38.7
Rhsim04G0089300 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.7e-07 60.8 188 25.0
RhsimUnG0029000 Rhododendron simsii HOM05D000003 ORTHO05D000126 1.7e-07 60.8 188 25.0
CANSAT11G0329 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-07 60.5 203 26.6
ECA238G3311 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.2e-07 60.5 78 34.6
Psat3g173240 Pisum sativum HOM05D000003 ORTHO05D000004 2.2e-07 60.5 128 27.3
QL03p041002 Quercus lobata HOM05D000763 ORTHO05D000599 2.2e-07 60.5 150 26.0
TPR.G10070 Trifolium pratense HOM05D000003 ORTHO05D000006 2.2e-07 60.5 54 48.1
Atru.chr6.307 Acer truncatum HOM05D000003 ORTHO05D000004 2.9e-07 60.1 149 29.5
HanXRQChr07g0203291 Helianthus annuus HOM05D000003 ORTHO05D000004 2.9e-07 60.1 62 40.3
Phvul.002G142300 Phaseolus vulgaris HOM05D002777 ORTHO05D001516 2.9e-07 60.1 59 42.4
arahy.Tifrunner.gnm1.ann1.A5SCG1 Arachis hypogaea HOM05D000003 ORTHO05D000006 3.8e-07 59.7 111 33.3
CANSAT56G2611 Cannabis sativa HOM05D000003 ORTHO05D000004 3.8e-07 59.7 57 45.6
ECA247G1165 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.8e-07 59.7 51 43.1
ECA247G1283 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.8e-07 59.7 55 38.2
SHI19911 Sapria himalayana HOM05D000024 ORTHO05D000006 3.8e-07 59.7 126 30.2
SHI33603 Sapria himalayana HOM05D000024 ORTHO05D000006 3.8e-07 59.7 198 23.7
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 4.9e-07 59.3 110 32.7
ECA234G1757 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.9e-07 59.3 91 35.2
ECA240G3475 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.9e-07 59.3 62 37.1
TPR.G35686 Trifolium pratense HOM05D000003 ORTHO05D000006 4.9e-07 59.3 57 38.6
ECA236G2966 Erigeron canadensis HOM05D000003 ORTHO05D000006 6.4e-07 58.9 55 43.6
ECA248G1774 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.4e-07 58.9 55 43.6
CSS0036010 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 8.4e-07 58.5 71 45.1
AUR62019469 Chenopodium quinoa HOM05D000003 ORTHO05D026512 8.4e-07 58.5 57 45.6
ECA233G3981 Erigeron canadensis HOM05D000006 ORTHO05D000004 8.4e-07 58.5 55 40.0
HanXRQChr15g0478601 Helianthus annuus HOM05D000003 ORTHO05D000004 8.4e-07 58.5 62 37.1
Medtr0032s0100 Medicago truncatula HOM05D000003 ORTHO05D000006 8.4e-07 58.5 70 40.0
Medtr2g090750 Medicago truncatula HOM05D000003 ORTHO05D000004 8.4e-07 58.5 61 47.5
PSO782G0247 Papaver somniferum HOM05D000003 ORTHO05D000004 8.4e-07 58.5 192 22.4
Psat0s1212g0120 Pisum sativum HOM05D007807 ORTHO05D000006 8.4e-07 58.5 148 25.7
Atru.chr2.1640 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-06 58.2 109 33.0
HanXRQChr01g0027891 Helianthus annuus HOM05D000003 ORTHO05D000004 1.1e-06 58.2 51 51.0
HanXRQChr07g0203731 Helianthus annuus HOM05D000003 ORTHO05D000004 1.1e-06 58.2 55 43.6
Psat2g132200 Pisum sativum HOM05D007807 ORTHO05D000006 1.1e-06 58.2 102 29.4
Atru.chr3.3701 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-06 57.8 221 23.5
ECA246G5287 Erigeron canadensis HOM05D000003 ORTHO05D000006 1.4e-06 57.8 55 43.6
ECA248G3330 Erigeron canadensis HOM05D001305 ORTHO05D001934 1.4e-06 57.8 55 40.0
Medtr3g068195 Medicago truncatula HOM05D002545 ORTHO05D000006 1.4e-06 57.8 87 36.8
QL02p033301 Quercus lobata HOM05D000003 ORTHO05D000004 1.4e-06 57.8 255 22.0
SHI45360 Sapria himalayana HOM05D000024 ORTHO05D000006 1.4e-06 57.8 115 34.8
PGSC0003DMG400032795 Solanum tuberosum HOM05D000003 ORTHO05D000004 1.4e-06 57.8 112 30.4
TPR.G18505 Trifolium pratense HOM05D000003 ORTHO05D000004 1.4e-06 57.8 137 30.7
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-06 57.4 55 43.6
CSS0036417 Camellia sinensis var. sinensis HOM05D010577 ORTHO05D000006 1.9e-06 57.4 227 22.0
CANSAT21G1723 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-06 57.4 207 22.2
CANSAT54G0918 Cannabis sativa HOM05D000003 ORTHO05D000006 1.9e-06 57.4 150 27.3
FvH4_1g22021 Fragaria vesca HOM05D000003 ORTHO05D000006 1.9e-06 57.4 75 37.3
HanXRQChr11g0345661 Helianthus annuus HOM05D000003 ORTHO05D000004 1.9e-06 57.4 265 20.0
HanXRQChr15g0473391 Helianthus annuus HOM05D000003 ORTHO05D000004 1.9e-06 57.4 265 20.0
QL03p043458 Quercus lobata HOM05D000003 ORTHO05D000006 1.9e-06 57.4 283 21.9
SHI32686 Sapria himalayana HOM05D000024 ORTHO05D000006 1.9e-06 57.4 164 25.0
ECA232G4857 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.4e-06 57.0 56 35.7
ECA236G3617 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.4e-06 57.0 62 33.9
ECA240G4032 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.4e-06 57.0 62 33.9
ECA246G1196 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.4e-06 57.0 51 41.2
ECA246G3162 Erigeron canadensis HOM05D000041 ORTHO05D000004 2.4e-06 57.0 56 37.5
Gohir.D11G305506 Gossypium hirsutum HOM05D000003 ORTHO05D000006 2.4e-06 57.0 66 37.9
Psat0s1735g0200 Pisum sativum HOM05D000003 ORTHO05D000006 2.4e-06 57.0 151 26.5
Psat5g082800 Pisum sativum HOM05D000003 ORTHO05D000004 2.4e-06 57.0 251 25.5
CSS0004372 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 3.2e-06 56.6 71 43.7
ECA233G2306 Erigeron canadensis HOM05D000296 ORTHO05D000175 3.2e-06 56.6 152 25.7
ECA233G2706 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.2e-06 56.6 121 25.6
ECA233G5644 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.2e-06 56.6 56 35.7
Lalb_Chr19g0128791 Lupinus albus HOM05D000003 ORTHO05D000006 3.2e-06 56.6 68 35.3
PSO210G0528 Papaver somniferum HOM05D000003 ORTHO05D000006 3.2e-06 56.6 57 33.3
PSO339G1341 Papaver somniferum HOM05D000003 ORTHO05D000006 3.2e-06 56.6 62 37.1
Atru.chr1.2846 Acer truncatum HOM05D000003 ORTHO05D000004 4.2e-06 56.2 56 42.9
CSS0007116 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 4.2e-06 56.2 97 33.0
CANSAT01G2119 Cannabis sativa HOM05D000003 ORTHO05D000006 4.2e-06 56.2 95 32.6
CANSAT21G1152 Cannabis sativa HOM05D000003 ORTHO05D000004 4.2e-06 56.2 169 25.4
ECA233G0876 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.2e-06 56.2 55 41.8
ECA240G3887 Erigeron canadensis HOM05D000014 ORTHO05D000093 4.2e-06 56.2 51 49.0
Psat4g190720 Pisum sativum HOM05D000003 ORTHO05D000004 4.2e-06 56.2 64 37.5
QL05p026285 Quercus lobata HOM05D000003 ORTHO05D000004 4.2e-06 56.2 95 36.8
SHI28443 Sapria himalayana HOM05D000024 ORTHO05D000006 4.2e-06 56.2 57 43.9
CSS0021103 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 5.5e-06 55.8 77 37.7
ECA232G2828 Erigeron canadensis HOM05D000003 ORTHO05D005386 5.5e-06 55.8 55 40.0
ECA234G1839 Erigeron canadensis HOM05D000003 ORTHO05D000004 5.5e-06 55.8 65 36.9
ECA247G1413 Erigeron canadensis HOM05D000003 ORTHO05D000004 5.5e-06 55.8 61 36.1
HanXRQChr10g0293281 Helianthus annuus HOM05D000003 ORTHO05D000004 5.5e-06 55.8 64 40.6
PSO699G0019 Papaver somniferum HOM05D000003 ORTHO05D000006 5.5e-06 55.8 169 23.7
SHI30886 Sapria himalayana HOM05D000024 ORTHO05D000006 5.5e-06 55.8 56 41.1
ECA233G2022 Erigeron canadensis HOM05D000593 ORTHO05D000562 7.1e-06 55.5 51 39.2
FvH4_4g18821 Fragaria vesca HOM05D000003 ORTHO05D000006 7.1e-06 55.5 181 23.8
Glyma.01G047600 Glycine max HOM05D007807 ORTHO05D000006 7.1e-06 55.5 85 27.1
HanXRQChr13g0387241 Helianthus annuus HOM05D000003 ORTHO05D000004 7.1e-06 55.5 62 37.1
TPR.G40650 Trifolium pratense HOM05D000003 ORTHO05D000004 7.1e-06 55.5 58 34.5
TPR.G7506 Trifolium pratense HOM05D000003 ORTHO05D000004 7.1e-06 55.5 58 34.5
TAR014G0001 Trochodendron aralioides HOM05D000003 ORTHO05D000004 7.1e-06 55.5 74 37.8
Atru.chr1.2291 Acer truncatum HOM05D000024 ORTHO05D000006 9.3e-06 55.1 93 33.3
QL03p025004 Quercus lobata HOM05D000003 ORTHO05D000006 9.3e-06 55.1 87 36.8
SHI19546 Sapria himalayana HOM05D000003 ORTHO05D000006 9.3e-06 55.1 56 42.9
SHI37947 Sapria himalayana HOM05D000024 ORTHO05D000006 9.3e-06 55.1 57 38.6
SHI54896 Sapria himalayana HOM05D000024 ORTHO05D000006 9.3e-06 55.1 53 43.4
SEGI_10809 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 9.3e-06 55.1 55 47.3


User provided reference genes

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