Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 1.8e-137 493.0 334 100.0
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 1.7e-108 396.7 335 88.7
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 6.1e-98 361.7 396 73.5
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 2.9e-84 316.2 397 67.3
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 7.3e-75 285.0 390 62.1
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 3.1e-73 279.6 398 62.6
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 7.0e-70 268.5 398 62.3
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 4.9e-63 245.7 398 56.5
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 1.8e-57 227.3 399 55.9
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.4e-54 217.6 381 57.7
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.2e-53 214.5 399 51.6
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 7.8e-53 211.8 398 51.3
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 1.2e-50 204.5 366 49.5
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.2e-50 204.5 366 49.5
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 2.1e-50 203.8 386 53.9
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.1e-49 201.4 404 47.3
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 5.2e-49 199.1 318 62.3
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 2.6e-48 196.8 397 47.1
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 5.8e-48 195.7 397 49.9
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 7.6e-48 195.3 402 46.5
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 9.9e-48 194.9 402 47.5
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 1.7e-47 194.1 382 50.3
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 1.1e-46 191.4 389 51.4
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 2.4e-46 190.3 401 49.4
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 3.2e-46 189.9 406 45.6
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 1.2e-45 188.0 405 44.9
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 2.1e-45 187.2 390 48.2
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 2.7e-45 186.8 407 48.2
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 1.7e-44 184.1 384 49.0
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 5.1e-44 182.6 380 46.1
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 8.7e-44 181.8 405 45.7
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 1.1e-43 181.4 398 47.7
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 2.5e-43 180.3 403 48.6
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.3e-43 179.9 378 53.7
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 7.3e-43 178.7 397 49.1
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 1.6e-42 177.6 400 45.0
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 1.1e-41 174.9 397 48.1
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.4e-41 174.5 380 47.9
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 3.1e-41 173.3 408 51.7
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 4.0e-41 172.9 390 49.0
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 9.0e-41 171.8 407 45.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 1.5e-40 171.0 399 43.4
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 1.5e-40 171.0 403 47.9
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.0e-40 170.6 346 43.4
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.0e-40 170.6 397 44.1
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 2.6e-40 170.2 374 45.7
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 5.8e-40 169.1 121 77.7
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 7.6e-40 168.7 122 76.2
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 7.6e-40 168.7 398 45.2
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 7.6e-40 168.7 406 47.3
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 9.9e-40 168.3 122 77.0
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 1.3e-39 167.9 121 77.7
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 1.3e-39 167.9 390 48.5
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.3e-39 167.9 401 49.6
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.3e-39 167.9 401 49.6
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 4.9e-39 166.0 123 74.0
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 6.4e-39 165.6 122 74.6
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 8.4e-39 165.2 122 74.6
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 8.4e-39 165.2 405 45.4
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 8.4e-39 165.2 122 73.8
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 1.1e-38 164.9 389 44.7
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 1.4e-38 164.5 122 73.8
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 1.9e-38 164.1 122 75.4
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 2.4e-38 163.7 388 44.6
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 5.4e-38 162.5 122 73.0
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 7.1e-38 162.2 407 45.7
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 7.1e-38 162.2 122 74.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 7.1e-38 162.2 122 73.0
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 9.3e-38 161.8 402 47.3
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 1.6e-37 161.0 381 42.8
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 2.1e-37 160.6 411 44.3
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.5e-37 159.8 396 45.7
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 3.5e-37 159.8 122 73.0
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.6e-37 159.5 398 45.0
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 4.6e-37 159.5 123 72.4
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 7.9e-37 158.7 124 71.0
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 1.8e-36 157.5 120 72.5
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 2.3e-36 157.1 405 40.5
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.3e-36 157.1 119 73.1
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 3.0e-36 156.8 122 70.5
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 3.9e-36 156.4 401 40.9
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.9e-36 156.4 393 42.7
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 5.1e-36 156.0 121 71.9
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 6.7e-36 155.6 408 40.7
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 6.7e-36 155.6 121 71.9
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.1e-35 154.8 121 69.4
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 1.9e-35 154.1 390 43.3
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-35 154.1 102 80.4
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 1.9e-35 154.1 124 71.0
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 2.5e-35 153.7 385 37.1
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 5.6e-35 152.5 399 44.6
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 7.4e-35 152.1 390 43.3
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 9.6e-35 151.8 415 43.6
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 2.1e-34 150.6 122 67.2
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.4e-33 147.9 124 67.7
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.8e-33 147.5 415 44.3
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 4.0e-33 146.4 374 49.5
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 4.0e-33 146.4 403 47.6
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 5.3e-33 146.0 123 66.7
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 9.0e-33 145.2 123 66.7
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-32 144.8 122 67.2
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.2e-32 144.8 122 67.2
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 2.6e-32 143.7 393 45.5
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 3.4e-32 143.3 128 65.6
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 1.9e-30 137.5 382 40.6
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 2.4e-30 137.1 355 46.2
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 9.3e-30 135.2 123 64.2
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 2.1e-29 134.0 124 63.7
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 2.1e-29 134.0 124 63.7
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 2.1e-29 134.0 123 64.2
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 2.1e-29 134.0 123 64.2
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 4.6e-29 132.9 406 41.6
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 4.3e-27 126.3 163 51.5
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 1.3e-26 124.8 122 59.0
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.6e-26 124.4 137 57.7
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 2.4e-25 120.6 323 42.4
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 2.6e-24 117.1 156 50.6
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 1.0e-23 115.2 87 73.6
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 8.4e-23 112.1 112 67.9
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 1.6e-18 97.8 344 45.3
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 2.1e-18 97.4 57 93.0
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 4.8e-18 96.3 63 81.0
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 6.5e-15 85.9 57 86.0
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 1.3e-12 78.2 337 38.6
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 3.0e-12 77.0 327 40.1
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 2.2e-10 70.9 98 43.9
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.7e-10 70.1 296 38.9
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 8.2e-10 68.9 196 50.5
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 2.0e-08 64.3 86 47.7
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 2.0e-08 64.3 57 59.6


User provided reference genes

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