Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0365s0010 Medicago truncatula HOM05D004203 ORTHO05D004830 2.1e-252 875.2 429 100.0
Psat6g100840 Pisum sativum HOM05D004203 ORTHO05D004830 4.3e-221 771.2 424 88.7
Ca_12360_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 4.6e-207 724.5 429 83.2
Ca_12363_v3 Cicer arietinum L. HOM05D004203 ORTHO05D004830 4.6e-207 724.5 429 83.2
Lalb_Chr17g0337651 Lupinus albus HOM05D004203 ORTHO05D004830 3.0e-190 668.7 423 76.8
VMungo0900G0001 Vigna mungo HOM05D004203 ORTHO05D004830 4.3e-189 664.8 414 78.3
Potri.007G001200 Populus trichocarpa HOM05D004203 ORTHO05D004830 9.0e-187 657.1 424 75.2
Phvul.003G000800 Phaseolus vulgaris HOM05D004203 ORTHO05D004830 2.9e-185 652.1 414 75.1
Glyma.09G285700 Glycine max HOM05D004203 ORTHO05D004830 3.2e-184 648.7 434 74.0
COL.COLO4_33135 Corchorus olitorius HOM05D004203 ORTHO05D004830 9.4e-184 647.1 424 72.6
TAR623G0552 Trochodendron aralioides HOM05D004203 ORTHO05D004830 3.6e-183 645.2 428 72.9
CiPaw.15G000900 Carya illinoinensis HOM05D004203 ORTHO05D004830 6.1e-183 644.4 430 71.9
Lj2g0024262 Lotus japonicus HOM05D004203 ORTHO05D004830 6.1e-183 644.4 430 74.7
Duzib248G1608 Durio zibethinus HOM05D004203 ORTHO05D004830 5.1e-182 641.3 434 72.4
Sabra07G0000900 Salix brachista HOM05D004203 ORTHO05D004830 2.0e-181 639.4 427 71.4
DCAR_026874 Daucus carota HOM05D004203 ORTHO05D004830 4.3e-181 638.3 433 71.1
QL01p000433 Quercus lobata HOM05D004203 ORTHO05D004830 7.4e-181 637.5 423 71.6
Thecc.02G153000 Theobroma cacao HOM05D004203 ORTHO05D004830 9.7e-181 637.1 424 71.7
TWI74G0727 Tripterygium wilfordii HOM05D004203 ORTHO05D004830 9.7e-181 637.1 417 71.9
Manes.04G161600 Manihot esculenta HOM05D004203 ORTHO05D004830 1.3e-180 636.7 425 71.5
Atru.chr11.55 Acer truncatum HOM05D004203 ORTHO05D004830 8.2e-180 634.0 422 70.9
Actinidia13679 Actinidia chinensis HOM05D004203 ORTHO05D004830 1.4e-179 633.3 426 70.4
Gohir.A13G062700 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.1e-179 632.1 418 72.0
PSO063G7450 Papaver somniferum HOM05D004203 ORTHO05D004830 4.1e-179 631.7 431 70.5
Aqoxy3G04325 Aquilegia oxysepala HOM05D004203 ORTHO05D004830 6.9e-179 630.9 436 69.5
Ciclev10015311m.g Citrus clementina HOM05D004203 ORTHO05D004830 1.5e-178 629.8 430 69.3
Gorai.013G067000 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.0e-178 629.4 418 71.8
PSO782G5227 Papaver somniferum HOM05D004203 ORTHO05D004830 2.0e-178 629.4 432 70.1
Gohir.D13G059200 Gossypium hirsutum HOM05D004203 ORTHO05D004830 3.4e-178 628.6 418 71.5
Hma1.2p1_0513F.1_g169570 Hydrangea macrophylla HOM05D004203 ORTHO05D004830 4.5e-178 628.2 418 71.1
Haze_17403 Corylus avellana HOM05D004203 ORTHO05D004830 1.3e-177 626.7 429 70.6
Rhsim02G0210900 Rhododendron simsii HOM05D004203 ORTHO05D004830 1.1e-176 623.6 422 70.9
Cfa018675 Carpinus fangiana HOM05D004203 ORTHO05D004830 2.5e-176 622.5 424 71.0
Oeu027932.1 Olea europaea HOM05D004203 ORTHO05D004830 2.1e-175 619.4 430 69.1
ClCG01G007960 Citrullus lanatus HOM05D004203 ORTHO05D004830 1.4e-174 616.7 428 68.9
Atru.chr11.58 Acer truncatum HOM05D004203 ORTHO05D004830 1.8e-174 616.3 414 70.3
Cpa.g.sc257.7 Carica papaya HOM05D004203 ORTHO05D004830 2.3e-174 615.9 431 68.9
Peaxi162Scf00603g00031 Petunia axillaris HOM05D004203 ORTHO05D004830 8.8e-174 614.0 433 69.1
Cc11_g04630 Coffea canephora HOM05D004203 ORTHO05D004830 1.7e-172 609.8 427 67.7
THA.LOC104826512 Tarenaya hassleriana HOM05D004203 ORTHO05D004830 2.2e-172 609.4 422 69.0
Cc11_g04600 Coffea canephora HOM05D004203 ORTHO05D004830 3.7e-172 608.6 428 67.8
Thhalv10020793m.g Eutrema salsugineum HOM05D004203 ORTHO05D004830 3.7e-172 608.6 426 70.2
EL10Ac9g23011 Beta vulgaris HOM05D004203 ORTHO05D004830 4.8e-172 608.2 427 67.7
MBI06_g12559_MAGBIO Magnolia biondii HOM05D004203 ORTHO05D004830 8.2e-172 607.4 420 69.3
MD13G1001600 Malus domestica HOM05D004203 ORTHO05D004830 8.2e-172 607.4 442 67.0
CSS0042488 Camellia sinensis var. sinensis HOM05D004203 ORTHO05D004830 1.8e-171 606.3 432 68.1
Eucgr.G02607 Eucalyptus grandis HOM05D004203 ORTHO05D004830 1.8e-171 606.3 429 68.8
CARHR095520 Cardamine hirsuta HOM05D004203 ORTHO05D004830 2.4e-171 605.9 426 69.7
AL3G33640 Arabidopsis lyrata HOM05D004203 ORTHO05D004830 5.3e-171 604.7 426 70.2
CANSAT78G1232 Cannabis sativa HOM05D004203 ORTHO05D004830 5.3e-171 604.7 431 67.7
Carub.0003s1989 Capsella rubella HOM05D004203 ORTHO05D004830 5.3e-171 604.7 426 69.7
AUR62032903 Chenopodium quinoa HOM05D004203 ORTHO05D004830 9.1e-171 604.0 429 68.5
Nitab4.5_0001018g0120 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.2e-170 603.6 424 69.3
Prupe.1G350900 Prunus persica HOM05D004203 ORTHO05D004830 1.2e-170 603.6 456 66.0
Aa31LG8G6770 Aethionema arabicum HOM05D004203 ORTHO05D004830 4.5e-170 601.7 417 69.5
CAN.G143.62 Capsicum annuum HOM05D004203 ORTHO05D004830 4.5e-170 601.7 434 67.5
AT3G19990 Arabidopsis thaliana HOM05D004203 ORTHO05D004830 7.7e-170 600.9 426 69.2
BcaB06g26068 Brassica carinata HOM05D004203 ORTHO05D004830 1.0e-169 600.5 425 69.2
Nitab4.5_0001803g0070 Nicotiana tabacum HOM05D004203 ORTHO05D004830 1.0e-169 600.5 424 68.9
Sp3g18010 Schrenkiella parvula HOM05D004203 ORTHO05D004830 2.2e-169 599.4 426 68.8
BolC1t04373H Brassica oleracea HOM05D004203 ORTHO05D004830 2.9e-169 599.0 426 69.2
BraA05t21796Z Brassica rapa HOM05D004203 ORTHO05D004830 3.8e-169 598.6 423 68.6
Eucgr.L03404 Eucalyptus grandis HOM05D004203 ORTHO05D004830 3.8e-169 598.6 419 68.5
Eucgr.G02598 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.0e-169 598.2 419 68.7
C01p44100 Brassica napus HOM05D004203 ORTHO05D004830 6.5e-169 597.8 426 69.0
Dinv37943 Davidia involucrata HOM05D004203 ORTHO05D004830 6.5e-169 597.8 423 69.7
BraA01t03555Z Brassica rapa HOM05D004203 ORTHO05D004830 8.5e-169 597.4 423 68.6
BcaC09g48955 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-168 596.7 426 68.8
Sopen11g002260 Solanum pennellii HOM05D004203 ORTHO05D004830 1.4e-168 596.7 429 68.5
BcaB04g20673 Brassica carinata HOM05D004203 ORTHO05D004830 3.2e-168 595.5 424 69.1
A05p29130 Brassica napus HOM05D004203 ORTHO05D004830 3.2e-168 595.5 423 67.8
PGSC0003DMG400000979 Solanum tuberosum HOM05D004203 ORTHO05D004830 3.2e-168 595.5 432 67.8
Duzib132G1212 Durio zibethinus HOM05D004203 ORTHO05D004830 7.2e-168 594.3 431 66.1
CsaV3_5G021930 Cucumis sativus L. HOM05D004203 ORTHO05D004830 1.2e-167 593.6 428 67.3
MELO3C005084.2 Cucumis melo HOM05D004203 ORTHO05D004830 2.1e-167 592.8 428 66.6
A01p34680 Brassica napus HOM05D004203 ORTHO05D004830 3.6e-167 592.0 423 68.1
PGR142G4147 Punica granatum HOM05D004203 ORTHO05D004830 5.2e-166 588.2 448 66.3
BcaC05g28375 Brassica carinata HOM05D004203 ORTHO05D004830 9.7e-165 583.9 416 68.3
BolC5t33177H Brassica oleracea HOM05D004203 ORTHO05D004830 9.7e-165 583.9 416 68.3
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 1.3e-164 583.6 418 66.3
AUR62017749 Chenopodium quinoa HOM05D004203 ORTHO05D004830 1.3e-164 583.6 411 67.4
TPR.G34239 Trifolium pratense HOM05D004203 ORTHO05D004830 2.8e-164 582.4 308 91.9
ClCG01G007980 Citrullus lanatus HOM05D004203 ORTHO05D004830 3.7e-164 582.0 430 65.1
RcHm_v2.0_Chr4g0447121 Rosa chinensis HOM05D004203 ORTHO05D004830 1.2e-162 577.0 412 67.0
Lsat_1_v5_gn_3_35621 Lactuca sativa HOM05D004203 ORTHO05D004830 1.3e-161 573.5 429 64.6
Hund24393 Selenicereus undatus HOM05D004203 ORTHO05D004830 1.3e-161 573.5 435 64.4
ECA234G3608 Erigeron canadensis HOM05D004203 ORTHO05D004830 3.8e-161 572.0 433 64.9
Sed0024681 Sechium edule HOM05D004203 ORTHO05D004830 8.5e-161 570.9 424 65.6
FvH4_4g37300 Fragaria vesca HOM05D004203 ORTHO05D004830 1.9e-160 569.7 412 66.7
Lsat_1_v5_gn_4_27720 Lactuca sativa HOM05D004203 ORTHO05D004830 1.6e-159 566.6 432 64.4
HanXRQChr15g0472171 Helianthus annuus HOM05D004203 ORTHO05D004830 2.7e-159 565.8 436 63.5
FAN17G0196 Fragaria x ananassa HOM05D004203 ORTHO05D004830 3.0e-158 562.4 412 66.5
Eucgr.G02596 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.2e-158 561.6 429 65.0
Gohir.D13G059100 Gossypium hirsutum HOM05D004203 ORTHO05D004830 5.2e-158 561.6 422 63.0
Gorai.013G066900 Gossypium raimondii HOM05D004203 ORTHO05D004830 2.6e-157 559.3 424 63.0
Migut.O00611 Erythranthe guttata HOM05D004203 ORTHO05D004830 1.8e-155 553.1 418 63.6
Migut.L00789 Erythranthe guttata HOM05D004203 ORTHO05D004830 2.0e-154 549.7 434 62.2
ECA246G0515 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.1e-152 543.9 431 63.1
SalBow2G2162 Salvia bowleyana HOM05D004203 ORTHO05D004830 1.2e-151 540.4 427 62.3
ECA246G1911 Erigeron canadensis HOM05D004203 ORTHO05D004830 1.6e-151 540.0 423 64.1
MSTRG.8095 Avicennia marina HOM05D004203 ORTHO05D004830 2.1e-151 539.7 437 63.4
SHI10741 Sapria himalayana HOM05D004203 ORTHO05D004830 1.0e-150 537.3 408 64.0
Eucgr.G02594 Eucalyptus grandis HOM05D004203 ORTHO05D004830 5.2e-150 535.0 422 62.6
C05p44530 Brassica napus HOM05D004203 ORTHO05D004830 2.6e-149 532.7 416 63.7
QL01p000454 Quercus lobata HOM05D004203 ORTHO05D004830 4.1e-147 525.4 430 60.7
ATR0124G027 Amborella trichopoda HOM05D004203 ORTHO05D004830 9.1e-147 524.2 425 60.9
Lsat_1_v5_gn_8_139521 Lactuca sativa HOM05D004203 ORTHO05D004830 2.0e-146 523.1 433 58.0
unitig_749.g13343 Utricularia gibba HOM05D004203 ORTHO05D004830 2.0e-146 523.1 426 60.6
Zm00001eb259360 Zea mays HOM05D004203 ORTHO05D004830 6.6e-145 518.1 413 59.8
HPP92_005409 Vanilla planifolia HOM05D004203 ORTHO05D004830 1.9e-144 516.5 420 62.4
HPP92_022176 Vanilla planifolia HOM05D004203 ORTHO05D004830 9.5e-144 514.2 423 58.6
Os02g0828200 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 2.8e-143 512.7 425 58.8
HanXRQChr09g0251301 Helianthus annuus HOM05D004203 ORTHO05D004830 8.9e-142 507.7 434 55.5
HanXRQChr17g0559591 Helianthus annuus HOM05D004203 ORTHO05D004830 7.5e-141 504.6 434 56.0
SEGI_02027 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 9.8e-141 504.2 452 54.0
QL01p000540 Quercus lobata HOM05D004203 ORTHO05D004830 1.7e-140 503.4 358 68.4
Eucgr.G02595 Eucalyptus grandis HOM05D004203 ORTHO05D004830 2.8e-140 502.7 428 58.9
ECA233G1072 Erigeron canadensis HOM05D004203 ORTHO05D004830 5.2e-134 481.9 398 56.3
Os02g0828500 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 9.8e-133 477.6 417 55.2
Medtr0400s0020 Medicago truncatula HOM05D004203 ORTHO05D004830 4.6e-130 468.8 223 100.0
MD16G1004500 Malus domestica HOM05D004203 ORTHO05D004830 2.1e-127 459.9 402 57.5
AagrBONN_evm.TU.Sc2ySwM_368.1197 Anthoceros agrestis HOM05D004203 ORTHO05D004830 9.5e-120 434.5 437 50.8
SMO117G0084 Selaginella moellendorffii HOM05D004203 ORTHO05D004830 1.9e-112 410.2 414 50.5
Thecc.02G152900 Theobroma cacao HOM05D004203 ORTHO05D004830 5.2e-110 402.1 299 63.5
GSVIVG01034366001 Vitis vinifera HOM05D004203 ORTHO05D004830 3.2e-107 392.9 429 50.3
Pp3c17_21640 Physcomitrium patens HOM05D004203 ORTHO05D004830 7.1e-107 391.7 422 47.6
Mapoly0080s0012 Marchantia polymorpha HOM05D004203 ORTHO05D004830 8.7e-105 384.8 417 45.6
SEGI_01054 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 4.3e-104 382.5 347 53.3
GSVIVG01034368001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.6e-103 380.6 429 50.1
Sc08g0004160 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.7e-100 370.5 295 61.0
Prupe.1G351100 Prunus persica HOM05D004203 ORTHO05D004830 3.1e-86 323.2 239 64.4
Cre16.g671500 Chlamydomonas reinhardtii HOM05D004203 ORTHO05D004830 1.0e-81 308.1 414 40.1
SEGI_32381 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.8e-81 307.4 292 51.4
Lj3A845T90 Lonicera japonica HOM05D004203 ORTHO05D004830 1.3e-76 291.2 247 59.5
Lj3C845T9 Lonicera japonica HOM05D004203 ORTHO05D004830 1.2e-53 214.9 159 66.0
Sc08g0004150 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.1e-51 208.4 135 69.6
SEGI_16211 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 6.1e-50 202.6 310 37.7
Atru.chr11.60 Acer truncatum HOM05D004203 ORTHO05D004830 2.3e-49 200.7 161 59.6
Sc08g0004170 Simmondsia chinensis HOM05D004203 ORTHO05D004830 7.4e-48 195.7 128 68.8
BcaB08g37041 Brassica carinata HOM05D004203 ORTHO05D004830 3.8e-44 183.3 146 61.6
Solyc11g006360.1 Solanum lycopersicum HOM05D004203 ORTHO05D004830 1.8e-41 174.5 114 70.2
Atru.chr11.61 Acer truncatum HOM05D004203 ORTHO05D004830 1.2e-37 161.8 130 63.8
SEGI_00877 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 5.9e-37 159.5 220 40.5
FAN12G3670 Fragaria x ananassa HOM05D004203 ORTHO05D004830 1.5e-35 154.8 157 54.8
BcaB06g27490 Brassica carinata HOM05D004203 ORTHO05D004830 4.9e-31 139.8 160 51.9
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 4.5e-29 133.3 408 26.2
BcaC07g39871 Brassica carinata HOM05D004203 ORTHO05D004830 1.4e-22 111.7 80 66.2
BcaB06g26576 Brassica carinata HOM05D004203 ORTHO05D004830 2.4e-22 110.9 78 67.9
Sc08g0004180 Simmondsia chinensis HOM05D004203 ORTHO05D004830 1.1e-19 102.1 98 55.1
Sc08g0004140 Simmondsia chinensis HOM05D004203 ORTHO05D004830 5.6e-19 99.8 80 61.2
Os03g0251425 Oryza sativa ssp. japonica HOM05D004203 ORTHO05D004830 3.6e-18 97.1 92 47.8
BcaB08g37040 Brassica carinata HOM05D004203 ORTHO05D004830 6.2e-18 96.3 66 68.2
BcaB06g27492 Brassica carinata HOM05D004203 ORTHO05D004830 2.3e-17 94.4 92 56.5
BcaB06g27488 Brassica carinata HOM05D004203 ORTHO05D004830 4.0e-17 93.6 104 51.0
BcaB06g27495 Brassica carinata HOM05D004203 ORTHO05D004830 1.3e-15 88.6 60 68.3
SEGI_08354 Sequoiadendron giganteum HOM05D004203 ORTHO05D004830 1.1e-11 75.5 72 47.2
GSVIVG01034364001 Vitis vinifera HOM05D004203 ORTHO05D004830 1.9e-11 74.7 66 56.1
BcaB06g27494 Brassica carinata HOM05D004203 ORTHO05D004830 2.5e-11 74.3 67 56.7
BcaC07g38231 Brassica carinata HOM05D004203 ORTHO05D004830 2.3e-09 67.8 59 62.7
COL.COLO4_33125 Corchorus olitorius HOM05D004203 ORTHO05D004830 4.0e-09 67.0 48 60.4
BcaB06g26577 Brassica carinata HOM05D004203 ORTHO05D004830 2.0e-08 64.7 56 60.7
Pp3c14_4390 Physcomitrium patens HOM05D004203 ORTHO05D004830 1.4e-06 58.5 73 35.6
BcaB05g24942 Brassica carinata HOM05D004203 ORTHO05D004830 3.2e-06 57.4 35 68.6
MCO08G255 Micromonas commoda HOM05D004203 ORTHO05D004830 5.4e-06 56.6 100 35.0
A05p19690 Brassica napus HOM05D004203 ORTHO05D004830 7.1e-06 56.2 52 57.7


User provided reference genes

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