Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 3.7e-170 601.7 349 100.0
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 2.4e-121 439.5 354 74.9
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 2.3e-100 369.8 356 65.4
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 5.1e-95 352.1 352 64.2
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 1.2e-93 347.4 349 63.9
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.6e-93 347.1 353 61.8
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 6.2e-93 345.1 345 59.4
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 8.9e-92 341.3 349 57.9
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 4.6e-88 328.9 369 56.6
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 3.9e-87 325.9 370 58.9
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 7.6e-83 311.6 368 53.0
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 1.7e-82 310.5 284 65.1
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 7.1e-81 305.1 364 54.1
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 6.6e-79 298.5 374 52.1
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 1.9e-78 297.0 358 52.5
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 6.2e-77 292.0 356 52.8
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.4e-76 290.8 361 51.5
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 2.4e-76 290.0 359 52.6
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 4.0e-76 289.3 357 51.8
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 5.8e-75 285.4 351 51.0
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 7.6e-75 285.0 360 54.2
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 2.2e-74 283.5 372 53.5
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 2.9e-74 283.1 351 50.4
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 4.9e-74 282.3 352 53.7
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 1.4e-73 280.8 374 50.8
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 4.2e-73 279.3 371 48.8
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 4.2e-73 279.3 351 49.9
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 5.4e-73 278.9 377 52.0
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 1.2e-72 277.7 369 49.3
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 1.6e-72 277.3 373 49.9
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 7.9e-72 275.0 370 51.4
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 1.3e-71 274.2 372 51.6
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.8e-71 273.9 365 49.3
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.8e-71 273.9 364 48.1
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 6.7e-71 271.9 348 51.1
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 4.3e-70 269.2 378 50.0
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 5.6e-70 268.9 358 51.1
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 5.6e-70 268.9 367 52.3
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 9.6e-70 268.1 363 54.0
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 6.2e-69 265.4 372 48.4
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 3.1e-68 263.1 385 48.8
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 2.6e-67 260.0 369 51.5
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 3.4e-67 259.6 390 49.0
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 4.9e-66 255.8 374 46.5
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.7e-64 250.0 346 51.2
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 2.7e-64 250.0 362 46.7
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 3.5e-64 249.6 347 50.1
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 4.6e-64 249.2 352 48.9
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 6.0e-64 248.8 355 49.9
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 1.1e-62 244.6 361 48.2
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 1.1e-62 244.6 383 47.3
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.6e-61 240.7 401 44.1
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 4.8e-61 239.2 354 45.5
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 4.5e-59 232.6 352 47.7
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 7.6e-59 231.9 435 42.8
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 1.0e-58 231.5 378 46.3
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 8.4e-58 228.4 351 46.7
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 2.5e-57 226.9 349 47.9
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 3.9e-55 219.5 352 47.2
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 6.7e-55 218.8 350 47.4
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 8.7e-55 218.4 361 44.6
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 4.1e-52 209.5 466 37.6
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 2.2e-50 203.8 354 45.5
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 3.8e-50 203.0 296 48.3
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 5.0e-50 202.6 401 41.4
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 6.5e-50 202.2 375 41.1
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.4e-49 201.1 368 41.0
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 1.9e-49 200.7 299 45.8
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 7.2e-49 198.7 293 46.8
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 9.3e-49 198.4 365 41.9
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 4.6e-48 196.1 293 45.4
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 6.1e-48 195.7 365 41.6
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 1.0e-47 194.9 368 41.6
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 1.9e-46 190.7 347 42.7
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 3.3e-46 189.9 394 39.8
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 5.7e-46 189.1 353 40.2
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 9.7e-46 188.3 357 40.3
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 9.7e-46 188.3 351 43.0
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 1.3e-45 188.0 363 41.6
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.7e-45 187.6 349 43.3
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 8.2e-45 185.3 359 41.8
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 2.4e-44 183.7 367 40.9
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 6.5e-42 175.6 349 39.8
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 8.5e-42 175.3 426 39.7
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 2.5e-41 173.7 326 41.1
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 4.2e-41 172.9 405 36.3
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 9.4e-41 171.8 410 37.6
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 7.9e-40 168.7 406 38.7
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 1.3e-37 161.4 289 42.6
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 2.8e-37 160.2 302 39.4
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 1.2e-35 154.8 353 37.7
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 6.7e-31 139.0 377 36.1
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 2.8e-29 133.7 355 39.2
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 3.1e-28 130.2 327 35.5
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 1.0e-26 125.2 366 33.1
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 6.5e-26 122.5 152 55.9
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 1.1e-25 121.7 365 35.6
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 4.2e-25 119.8 358 36.3
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 7.2e-25 119.0 353 35.1
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 1.2e-24 118.2 344 34.3
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 4.7e-24 116.3 349 34.7
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 3.3e-22 110.2 208 42.3
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 3.7e-21 106.7 305 34.4
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 1.4e-15 88.2 371 27.5
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 3.0e-15 87.0 45 88.9
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.4e-14 83.6 49 81.6
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 3.4e-14 83.6 49 81.6
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 4.4e-14 83.2 49 81.6
ATR0665G137 Amborella trichopoda HOM05D006327 ORTHO05D007952 7.5e-14 82.4 154 39.6
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 9.8e-14 82.0 49 79.6
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.3e-13 81.6 49 81.6
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 2.8e-13 80.5 67 65.7
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.8e-13 80.5 49 79.6
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.8e-13 80.5 49 79.6
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 6.3e-13 79.3 49 79.6
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 8.3e-13 79.0 45 80.0
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.4e-12 78.2 49 77.6
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 5.0e-10 69.7 45 68.9
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 1.1e-09 68.6 188 28.2
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.0e-07 62.0 49 63.3
SMO361G0449 Selaginella moellendorffii HOM05D063101 ORTHO05D007952 1.0e-07 62.0 187 29.9
SGA_v2.0_scaffold1G00727 Striga asiatica HOM05D006327 ORTHO05D016198 5.7e-06 56.2 54 51.9


User provided reference genes

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