Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0152s0030 Medicago truncatula HOM05D007013 ORTHO05D008999 4.9e-41 170.6 82 100.0
Medtr0152s0050 Medicago truncatula HOM05D007013 ORTHO05D008999 6.9e-27 123.6 61 100.0
Medtr3g052590 Medicago truncatula HOM05D007013 ORTHO05D008999 1.2e-26 122.9 101 62.4
Psat5g177160 Pisum sativum HOM05D007013 ORTHO05D008999 1.5e-26 122.5 101 62.4
Glyma.08G318300 Glycine max HOM05D007013 ORTHO05D008999 1.3e-25 119.4 101 61.4
Ca_14746_v3 Cicer arietinum L. HOM05D007013 ORTHO05D008999 1.7e-25 119.0 101 61.4
TPR.G33766 Trifolium pratense HOM05D007013 ORTHO05D008999 1.7e-25 119.0 101 61.4
Lj6g0002864 Lotus japonicus HOM05D007013 ORTHO05D008999 4.9e-25 117.5 101 61.4
arahy.Tifrunner.gnm1.ann1.YL2AFE Arachis hypogaea HOM05D007013 ORTHO05D008999 9.3e-24 113.2 108 55.6
arahy.Tifrunner.gnm1.ann1.PYQ1JD Arachis hypogaea HOM05D007013 ORTHO05D008999 1.2e-23 112.8 101 57.4
VMungo0540G0725 Vigna mungo HOM05D007013 ORTHO05D008999 1.6e-23 112.5 101 58.4
Phvul.006G045700 Phaseolus vulgaris HOM05D007013 ORTHO05D008999 3.5e-23 111.3 101 58.4
Lalb_Chr18g0049881 Lupinus albus HOM05D007013 ORTHO05D008999 1.6e-20 102.4 94 58.5
Glyma.18G095300 Glycine max HOM05D007013 ORTHO05D008999 1.2e-15 86.3 85 61.2
Haze_09698 Corylus avellana HOM05D007013 ORTHO05D008999 2.7e-15 85.1 101 45.5
Thecc.07G033700 Theobroma cacao HOM05D007013 ORTHO05D008999 1.0e-14 83.2 101 41.6
Cfa020325 Carpinus fangiana HOM05D007013 ORTHO05D008999 1.3e-14 82.8 101 45.5
CiPaw.12G131100 Carya illinoinensis HOM05D007013 ORTHO05D008999 1.8e-14 82.4 100 42.0
QL08p009594 Quercus lobata HOM05D007013 ORTHO05D008999 2.3e-14 82.0 101 44.6
Ciclev10008561m.g Citrus clementina HOM05D007013 ORTHO05D008999 5.1e-14 80.9 101 43.6
Duzib213G0396 Durio zibethinus HOM05D007013 ORTHO05D008999 5.1e-14 80.9 101 43.6
Dinv22254 Davidia involucrata HOM05D007013 ORTHO05D008999 6.7e-14 80.5 101 41.6
COL.COLO4_09677 Corchorus olitorius HOM05D007013 ORTHO05D008999 8.7e-14 80.1 101 41.6
Gohir.A01G080900 Gossypium hirsutum HOM05D007013 ORTHO05D008999 1.1e-13 79.7 101 41.6
Gohir.D01G068100 Gossypium hirsutum HOM05D007013 ORTHO05D008999 1.1e-13 79.7 101 41.6
Gorai.002G090100 Gossypium raimondii HOM05D007013 ORTHO05D008999 1.1e-13 79.7 101 41.6
PSO675G8214 Papaver somniferum HOM05D007013 ORTHO05D008999 1.1e-13 79.7 101 41.6
Aqoxy1G02096 Aquilegia oxysepala HOM05D007013 ORTHO05D008999 1.5e-13 79.3 101 38.6
PSO541G1885 Papaver somniferum HOM05D007013 ORTHO05D008999 1.5e-13 79.3 101 41.6
MD11G1215400 Malus domestica HOM05D007013 ORTHO05D008999 1.9e-13 79.0 102 42.2
Hma1.2p1_0036F.1_g023520 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 2.5e-13 78.6 101 39.6
Hma1.2p1_0036F.1_g023530 Hydrangea macrophylla HOM05D007013 ORTHO05D008999 2.5e-13 78.6 101 39.6
Atru.chr2.3453 Acer truncatum HOM05D007013 ORTHO05D008999 3.3e-13 78.2 101 42.6
Eucgr.F03478 Eucalyptus grandis HOM05D007013 ORTHO05D008999 3.3e-13 78.2 111 40.5
TAR624G0955 Trochodendron aralioides HOM05D007013 ORTHO05D008999 3.3e-13 78.2 101 40.6
EL10Ac4g07781 Beta vulgaris HOM05D007013 ORTHO05D008999 9.6e-13 76.6 101 43.6
Actinidia05088 Actinidia chinensis HOM05D007013 ORTHO05D008999 2.1e-12 75.5 101 39.6
Cc05_g13940 Coffea canephora HOM05D007013 ORTHO05D008999 2.1e-12 75.5 98 38.8
Zm00001eb030850 Zea mays HOM05D007013 ORTHO05D008999 2.8e-12 75.1 99 42.4
Manes.15G070387 Manihot esculenta HOM05D007013 ORTHO05D008999 4.8e-12 74.3 101 40.6
Oeu034036.2 Olea europaea HOM05D007013 ORTHO05D008999 6.2e-12 73.9 101 38.6
CANSAT11G0669 Cannabis sativa HOM05D007013 ORTHO05D008999 8.2e-12 73.6 101 40.6
Peaxi162Scf00235g00319 Petunia axillaris HOM05D007013 ORTHO05D008999 8.2e-12 73.6 99 40.4
Potri.001G418800 Populus trichocarpa HOM05D007013 ORTHO05D008999 8.2e-12 73.6 100 41.0
TWI38G0247 Tripterygium wilfordii HOM05D007013 ORTHO05D008999 8.2e-12 73.6 101 42.6
Nn1g07163 Nelumbo nucifera HOM05D007013 ORTHO05D008999 1.1e-11 73.2 102 39.2
Sed0023076 Sechium edule HOM05D007013 ORTHO05D008999 1.1e-11 73.2 100 37.0
RcHm_v2.0_Chr5g0033071 Rosa chinensis HOM05D007013 ORTHO05D008999 1.4e-11 72.8 97 38.1
Sabra16G0284300 Salix brachista HOM05D007013 ORTHO05D008999 1.4e-11 72.8 98 42.9
ATR0794G085 Amborella trichopoda HOM05D007013 ORTHO05D008999 1.8e-11 72.4 101 40.6
AUR62015801 Chenopodium quinoa HOM05D007013 ORTHO05D008999 1.8e-11 72.4 98 43.9
Rhsim06G0218600 Rhododendron simsii HOM05D007013 ORTHO05D008999 1.8e-11 72.4 101 37.6
AUR62020414 Chenopodium quinoa HOM05D007013 ORTHO05D008999 2.4e-11 72.0 101 41.6
Aa31LG8G7290 Aethionema arabicum HOM05D007013 ORTHO05D008999 4.0e-11 71.2 102 38.2
THA.LOC104825406 Tarenaya hassleriana HOM05D007013 ORTHO05D008999 4.0e-11 71.2 102 40.2
ClCG09G010880 Citrullus lanatus HOM05D007013 ORTHO05D008999 5.3e-11 70.9 100 36.0
Glyma.18G095150 Glycine max HOM05D007013 ORTHO05D008999 5.3e-11 70.9 49 75.5
MELO3C013155.2 Cucumis melo HOM05D007013 ORTHO05D008999 6.9e-11 70.5 100 38.0
SGA_v2.0_scaffold363G49936 Striga asiatica HOM05D007013 ORTHO05D008999 6.9e-11 70.5 98 40.8
GSVIVG01037670001 Vitis vinifera HOM05D007013 ORTHO05D008999 9.0e-11 70.1 101 37.6
AT3G20480 Arabidopsis thaliana HOM05D007013 ORTHO05D008999 1.2e-10 69.7 99 43.4
BcaB07g30535 Brassica carinata HOM05D007013 ORTHO05D008999 1.2e-10 69.7 98 39.8
CsaV3_7G021910 Cucumis sativus L. HOM05D007013 ORTHO05D008999 1.2e-10 69.7 100 37.0
MSTRG.14440 Avicennia marina HOM05D007013 ORTHO05D008999 1.5e-10 69.3 99 39.4
vmacro02226 Vaccinium macrocarpon HOM05D007013 ORTHO05D008999 1.5e-10 69.3 101 35.6
Lj1A874G27 Lonicera japonica HOM05D007013 ORTHO05D008999 2.6e-10 68.6 98 38.8
Nitab4.5_0005590g0010 Nicotiana tabacum HOM05D007013 ORTHO05D008999 2.6e-10 68.6 106 36.8
CSS0027260 Camellia sinensis var. sinensis HOM05D007013 ORTHO05D008999 4.5e-10 67.8 102 38.2
BcaC03g16648 Brassica carinata HOM05D007013 ORTHO05D008999 7.6e-10 67.0 102 37.3
C02p44890 Brassica napus HOM05D007013 ORTHO05D008999 7.6e-10 67.0 102 37.3
BolC2t10525H Brassica oleracea HOM05D007013 ORTHO05D008999 7.6e-10 67.0 102 37.3
BraA02t07867Z Brassica rapa HOM05D007013 ORTHO05D008999 7.6e-10 67.0 102 37.3
Thhalv10020871m.g Eutrema salsugineum HOM05D007013 ORTHO05D008999 7.6e-10 67.0 100 37.0
FAN16G1225 Fragaria x ananassa HOM05D007013 ORTHO05D008999 7.6e-10 67.0 100 38.0
Sopen07g032910 Solanum pennellii HOM05D007013 ORTHO05D008999 7.6e-10 67.0 103 35.9
Sp2g09120 Schrenkiella parvula HOM05D007013 ORTHO05D008999 1.0e-09 66.6 102 37.3
Carub.0003s2044 Capsella rubella HOM05D007013 ORTHO05D008999 1.3e-09 66.2 102 39.2
Pp3c19_1630 Physcomitrium patens HOM05D007013 ORTHO05D008999 1.3e-09 66.2 87 43.7
Solyc07g064710.3 Solanum lycopersicum HOM05D007013 ORTHO05D008999 1.3e-09 66.2 103 36.9
Ah.06g182900 Amaranthus hybridus HOM05D007013 ORTHO05D008999 1.7e-09 65.9 101 37.6
FvH4_3g19730 Fragaria vesca HOM05D007013 ORTHO05D008999 1.7e-09 65.9 101 36.6
HPP92_012407 Vanilla planifolia HOM05D007013 ORTHO05D008999 1.7e-09 65.9 101 35.6
A02p28310 Brassica napus HOM05D007013 ORTHO05D008999 2.2e-09 65.5 102 36.3
Cpa.g.sc12.289 Carica papaya HOM05D007013 ORTHO05D008999 2.2e-09 65.5 102 42.2
Hund01977 Selenicereus undatus HOM05D007013 ORTHO05D008999 2.2e-09 65.5 101 36.6
AL3G34260 Arabidopsis lyrata HOM05D007013 ORTHO05D008999 2.9e-09 65.1 99 38.4
CDE05G3055 Ceratophyllum demersum HOM05D007013 ORTHO05D008999 3.8e-09 64.7 88 39.8
Os07g0102000 Oryza sativa ssp. japonica HOM05D007013 ORTHO05D008999 5.0e-09 64.3 78 46.2
CAN.G337.80 Capsicum annuum HOM05D007013 ORTHO05D008999 6.5e-09 63.9 103 36.9
HanXRQChr03g0076401 Helianthus annuus HOM05D007013 ORTHO05D008999 6.5e-09 63.9 96 38.5
SEGI_14581 Sequoiadendron giganteum HOM05D007013 ORTHO05D008999 8.4e-09 63.5 104 35.6
DCAR_012723 Daucus carota HOM05D007013 ORTHO05D008999 2.5e-08 62.0 93 39.8
Nitab4.5_0002287g0070 Nicotiana tabacum HOM05D007013 ORTHO05D008999 4.2e-08 61.2 106 34.9
Migut.H01815 Erythranthe guttata HOM05D007013 ORTHO05D008999 5.5e-08 60.8 102 35.3
Sc16g0005930 Simmondsia chinensis HOM05D007013 ORTHO05D008999 1.0e-06 56.6 101 36.6
Mapoly0002s0307 Marchantia polymorpha HOM05D007013 ORTHO05D008999 3.0e-06 55.1 106 36.8


User provided reference genes

Program Settings