Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0152s0010 Medicago truncatula HOM05D044562 ORTHO05D000013 7.8e-55 216.9 107 100.0
Medtr0152s0060 Medicago truncatula HOM05D008463 ORTHO05D009933 2.2e-33 145.6 85 85.9
TPR.G39608 Trifolium pratense HOM05D000017 ORTHO05D000013 4.5e-26 121.3 76 75.0
TPR.G33471 Trifolium pratense HOM05D000017 ORTHO05D000013 1.0e-22 110.2 76 67.1
Ca_03275_v3 Cicer arietinum L. HOM05D000017 ORTHO05D000013 9.6e-21 103.6 80 60.0
Ca_12200_v3 Cicer arietinum L. HOM05D000017 ORTHO05D000013 9.6e-21 103.6 80 60.0
Ca_13798_v3 Cicer arietinum L. HOM05D000017 ORTHO05D011894 8.1e-20 100.5 80 57.5
TPR.G276 Trifolium pratense HOM05D000017 ORTHO05D000013 1.3e-17 93.2 72 56.9
TPR.G35629 Trifolium pratense HOM05D000017 ORTHO05D000013 2.2e-17 92.4 72 58.3
Sed0005941 Sechium edule HOM05D000017 ORTHO05D000013 3.1e-11 72.0 76 44.7
TWI38G0306 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 9.0e-11 70.5 76 48.7
TWI09G1423 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.4e-10 68.6 77 46.8
Rhsim11G0046200 Rhododendron simsii HOM05D000017 ORTHO05D000013 4.5e-10 68.2 76 42.1
TWI15G0388 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 4.5e-10 68.2 77 44.2
TWI34G0618 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 4.5e-10 68.2 76 47.4
TWI31G1298 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 1.0e-09 67.0 77 45.5
PGR042G0573 Punica granatum HOM05D000017 ORTHO05D000013 1.3e-09 66.6 77 37.7
RcHm_v2.0_Chr3g0494581 Rosa chinensis HOM05D000017 ORTHO05D011158 1.3e-09 66.6 79 38.0
TWI75G1886 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 1.7e-09 66.2 76 44.7
Sed0002495 Sechium edule HOM05D000017 ORTHO05D000013 2.2e-09 65.9 71 45.1
QL04p037370 Quercus lobata HOM05D000017 ORTHO05D000013 4.9e-09 64.7 72 36.1
QL11p032217 Quercus lobata HOM05D000017 ORTHO05D000013 4.9e-09 64.7 72 36.1
CANSAT78G0912 Cannabis sativa HOM05D000017 ORTHO05D000013 6.5e-09 64.3 78 41.0
Ca_14918_v3 Cicer arietinum L. HOM05D000017 ORTHO05D000013 6.5e-09 64.3 76 35.5
Hma1.2p1_0580F.1_g182840 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.5e-09 64.3 71 40.8
Ca_02180_v3 Cicer arietinum L. HOM05D000017 ORTHO05D000013 8.4e-09 63.9 71 36.6
Rhsim04G0159500 Rhododendron simsii HOM05D000017 ORTHO05D000013 8.4e-09 63.9 76 39.5
Eucgr.B01037 Eucalyptus grandis HOM05D000017 ORTHO05D000013 1.1e-08 63.5 76 36.8
PGR102G3378 Punica granatum HOM05D000017 ORTHO05D000013 1.1e-08 63.5 77 35.1
Ca_25297_v3 Cicer arietinum L. HOM05D008773 ORTHO05D010496 1.4e-08 63.2 76 36.8
CANSAT80G0839 Cannabis sativa HOM05D000017 ORTHO05D000013 1.9e-08 62.8 76 36.8
Dinv14599 Davidia involucrata HOM05D000017 ORTHO05D000013 1.9e-08 62.8 72 43.1
CANSAT11G0373 Cannabis sativa HOM05D000017 ORTHO05D000013 2.5e-08 62.4 76 36.8
CANSAT21G1114 Cannabis sativa HOM05D000017 ORTHO05D000013 2.5e-08 62.4 76 35.5
Prupe.6G181000 Prunus persica HOM05D000017 ORTHO05D000013 2.5e-08 62.4 72 41.7
TWI14G1428 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 2.5e-08 62.4 77 40.3
TWI15G0100 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 2.5e-08 62.4 73 45.2
TWI15G0892 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 2.5e-08 62.4 73 45.2
TWI53G0252 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 2.5e-08 62.4 73 45.2
TWI53G0734 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 2.5e-08 62.4 77 40.3
CANSAT11G2016 Cannabis sativa HOM05D000017 ORTHO05D000013 4.2e-08 61.6 76 36.8
Hma1.2p1_0449F.1_g155270 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 4.2e-08 61.6 63 46.0
Hma1.2p1_0593F.1_g185740 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 4.2e-08 61.6 63 46.0
Hma1.2p1_0667F.1_g199620 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 4.2e-08 61.6 63 44.4
Hma1.2p1_2684F.1_g326900 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 4.2e-08 61.6 63 46.0
TWI56G0654 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 5.5e-08 61.2 65 44.6
Ca_13615_v3 Cicer arietinum L. HOM05D008773 ORTHO05D010496 7.1e-08 60.8 74 35.1
Rhsim05G0009400 Rhododendron simsii HOM05D000017 ORTHO05D000013 7.1e-08 60.8 113 35.4
RcHm_v2.0_Chr7g0185171 Rosa chinensis HOM05D000017 ORTHO05D000013 7.1e-08 60.8 79 38.0
TWI09G1452 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 7.1e-08 60.8 77 39.0
Eucgr.J03175 Eucalyptus grandis HOM05D000017 ORTHO05D000013 9.3e-08 60.5 72 36.1
Hma1.2p1_0071F.1_g038190 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 9.3e-08 60.5 72 38.9
VMungo0251G2291 Vigna mungo HOM05D000005 ORTHO05D000012 9.3e-08 60.5 100 34.0
CANSAT56G1226 Cannabis sativa HOM05D000017 ORTHO05D000013 1.2e-07 60.1 76 36.8
CANSAT80G0557 Cannabis sativa HOM05D000017 ORTHO05D000013 1.2e-07 60.1 76 36.8
Hma1.2p1_0199F.1_g085640 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 1.2e-07 60.1 72 38.9
CANSAT25G0520 Cannabis sativa HOM05D000017 ORTHO05D000013 1.6e-07 59.7 77 37.7
CANSAT25G0797 Cannabis sativa HOM05D000017 ORTHO05D000013 1.6e-07 59.7 76 34.2
CANSAT56G2649 Cannabis sativa HOM05D000017 ORTHO05D000013 1.6e-07 59.7 77 37.7
ECA247G2865 Erigeron canadensis HOM05D000017 ORTHO05D000013 1.6e-07 59.7 72 36.1
VMungo0251G0600 Vigna mungo HOM05D000017 ORTHO05D000013 1.6e-07 59.7 93 34.4
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-07 59.3 72 37.5
ECA240G3344 Erigeron canadensis HOM05D000017 ORTHO05D000013 2.1e-07 59.3 72 36.1
Hma1.2p1_0309F.1_g120570 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.1e-07 59.3 76 38.2
Hma1.2p1_1572F.1_g291350 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.1e-07 59.3 76 38.2
Rhsim05G0107100 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.1e-07 59.3 68 42.6
Rhsim05G0107300 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.1e-07 59.3 68 42.6
TWI15G0063 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 2.1e-07 59.3 76 40.8
Atru.chr3.960 Acer truncatum HOM05D000017 ORTHO05D000013 2.7e-07 58.9 67 43.3
Atru.chr3.972 Acer truncatum HOM05D000017 ORTHO05D000013 2.7e-07 58.9 67 43.3
CANSAT01G1828 Cannabis sativa HOM05D000017 ORTHO05D000013 2.7e-07 58.9 77 33.8
ECA234G4579 Erigeron canadensis HOM05D000017 ORTHO05D000013 2.7e-07 58.9 88 31.8
Hma1.2p1_1076F.1_g254590 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.7e-07 58.9 76 38.2
Rhsim03G0174600 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.7e-07 58.9 76 35.5
Rhsim04G0080400 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.7e-07 58.9 78 42.3
Rhsim06G0115000 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.7e-07 58.9 76 38.2
CANSAT21G2291 Cannabis sativa HOM05D000017 ORTHO05D000013 3.5e-07 58.5 76 35.5
CANSAT25G3827 Cannabis sativa HOM05D000017 ORTHO05D000013 3.5e-07 58.5 76 36.8
CANSAT56G1544 Cannabis sativa HOM05D000017 ORTHO05D000013 3.5e-07 58.5 76 36.8
CANSAT78G1044 Cannabis sativa HOM05D000017 ORTHO05D000013 3.5e-07 58.5 76 36.8
Ca_17815_v3 Cicer arietinum L. HOM05D008773 ORTHO05D010496 3.5e-07 58.5 71 33.8
Hma1.2p1_0181F.1_g079980 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.5e-07 58.5 72 38.9
Prupe.4G046500 Prunus persica HOM05D000017 ORTHO05D000013 3.5e-07 58.5 72 38.9
Prupe.7G015700 Prunus persica HOM05D045816 ORTHO05D000013 3.5e-07 58.5 86 37.2
QL09p032027 Quercus lobata HOM05D000017 ORTHO05D000013 3.5e-07 58.5 90 34.4
CANSAT64G2354 Cannabis sativa HOM05D000017 ORTHO05D000013 4.6e-07 58.2 93 33.3
ECA233G3352 Erigeron canadensis HOM05D000017 ORTHO05D000013 4.6e-07 58.2 72 38.9
Migut.N02018 Erythranthe guttata HOM05D000017 ORTHO05D000013 4.6e-07 58.2 72 37.5
CANSAT21G0182 Cannabis sativa HOM05D000017 ORTHO05D000013 6.0e-07 57.8 93 33.3
CANSAT21G0768 Cannabis sativa HOM05D000017 ORTHO05D000013 6.0e-07 57.8 93 33.3
ECA233G3647 Erigeron canadensis HOM05D000017 ORTHO05D000013 6.0e-07 57.8 73 35.6
ECA234G1503 Erigeron canadensis HOM05D001936 ORTHO05D002296 6.0e-07 57.8 72 37.5
ECA240G1572 Erigeron canadensis HOM05D000017 ORTHO05D000013 6.0e-07 57.8 73 35.6
Hma1.2p1_0068F.1_g037160 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.0e-07 57.8 76 38.2
Hma1.2p1_0133F.1_g061350 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.0e-07 57.8 90 36.7
Hma1.2p1_0400F.1_g144590 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.0e-07 57.8 90 36.7
Hma1.2p1_0650F.1_g195490 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.0e-07 57.8 71 38.0
Hma1.2p1_1228F.1_g268660 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.0e-07 57.8 90 36.7
Hma1.2p1_2618F.1_g325525 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.0e-07 57.8 90 36.7
Sopen02g005760 Solanum pennellii HOM05D000017 ORTHO05D000013 6.0e-07 57.8 72 40.3
Sopen03g035430 Solanum pennellii HOM05D000017 ORTHO05D000013 6.0e-07 57.8 72 40.3
Sopen04g025960 Solanum pennellii HOM05D000017 ORTHO05D000013 6.0e-07 57.8 72 40.3
Sopen08g018320 Solanum pennellii HOM05D000017 ORTHO05D000013 6.0e-07 57.8 72 40.3
CANSAT25G3367 Cannabis sativa HOM05D000017 ORTHO05D000013 7.9e-07 57.4 56 48.2
CANSAT56G2167 Cannabis sativa HOM05D000017 ORTHO05D000013 7.9e-07 57.4 56 48.2
ECA246G2150 Erigeron canadensis HOM05D000017 ORTHO05D000013 1.0e-06 57.0 76 36.8
Medtr0152s0040 Medicago truncatula HOM05D044562 ORTHO05D000013 1.0e-06 57.0 29 86.2
Rhsim05G0156600 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.0e-06 57.0 78 41.0
Rhsim08G0011600 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.0e-06 57.0 76 34.2
TPR.G7517 Trifolium pratense HOM05D000017 ORTHO05D000013 1.0e-06 57.0 68 35.3
TWI59G1326 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 1.0e-06 57.0 76 36.8
ECA232G4215 Erigeron canadensis HOM05D000017 ORTHO05D000013 1.3e-06 56.6 73 35.6
ECA240G2053 Erigeron canadensis HOM05D000017 ORTHO05D000013 1.3e-06 56.6 73 34.2
HanXRQChr10g0319161 Helianthus annuus HOM05D000017 ORTHO05D000013 1.3e-06 56.6 76 34.2
Prupe.1G066000 Prunus persica HOM05D000017 ORTHO05D000013 1.3e-06 56.6 76 36.8
PGR042G0757 Punica granatum HOM05D000017 ORTHO05D000013 1.3e-06 56.6 74 32.4
PGR044G0878 Punica granatum HOM05D000017 ORTHO05D000013 1.3e-06 56.6 74 32.4
PGR044G2516 Punica granatum HOM05D000017 ORTHO05D000013 1.3e-06 56.6 74 33.8
PGR142G4382 Punica granatum HOM05D000017 ORTHO05D000013 1.3e-06 56.6 74 33.8
QL10p050574 Quercus lobata HOM05D000017 ORTHO05D000013 1.3e-06 56.6 76 32.9
PGR031G2330 Punica granatum HOM05D000017 ORTHO05D000013 1.8e-06 56.2 69 36.2
QL10p022804 Quercus lobata HOM05D000017 ORTHO05D000013 1.8e-06 56.2 73 37.0
Rhsim07G0255600 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.8e-06 56.2 78 37.2
Solyc04g049310.3 Solanum lycopersicum HOM05D011889 ORTHO05D012837 1.8e-06 56.2 67 41.8
TPR.G26921 Trifolium pratense HOM05D000017 ORTHO05D000013 1.8e-06 56.2 71 35.2
ECA232G2538 Erigeron canadensis HOM05D000017 ORTHO05D000013 2.3e-06 55.8 76 32.9
Hma1.2p1_0060F.1_g032860 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.3e-06 55.8 72 40.3
Hma1.2p1_2904F.1_g330080 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.3e-06 55.8 61 42.6
Rhsim01G0142700 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.3e-06 55.8 65 38.5
Rhsim06G0098100 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.3e-06 55.8 73 35.6
Atru.chr1.2633 Acer truncatum HOM05D000017 ORTHO05D000013 3.0e-06 55.5 73 38.4
CANSAT11G0617 Cannabis sativa HOM05D000017 ORTHO05D000013 3.0e-06 55.5 62 41.9
CANSAT54G2911 Cannabis sativa HOM05D000017 ORTHO05D000013 3.0e-06 55.5 76 34.2
ECA238G2722 Erigeron canadensis HOM05D000017 ORTHO05D000013 3.0e-06 55.5 76 31.6
ECA248G3195 Erigeron canadensis HOM05D000017 ORTHO05D000013 3.0e-06 55.5 76 31.6
Hma1.2p1_0775F.1_g216450 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.0e-06 55.5 63 41.3
Hma1.2p1_0787F.1_g217970 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.0e-06 55.5 73 37.0
Hma1.2p1_1793F.1_g302600 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.0e-06 55.5 73 37.0
Prupe.6G164700 Prunus persica HOM05D000017 ORTHO05D000013 3.0e-06 55.5 76 39.5
TWI09G1270 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.0e-06 55.5 78 41.0
TWI53G1859 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.0e-06 55.5 78 41.0
TWI79G1478 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 3.0e-06 55.5 78 41.0
ECA238G0862 Erigeron canadensis HOM05D000017 ORTHO05D000013 3.9e-06 55.1 73 37.0
Hma1.2p1_0085F.1_g044120 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.9e-06 55.1 75 38.7
Hma1.2p1_0085F.1_g044131 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.9e-06 55.1 75 38.7
Hma1.2p1_0185F.1_g081470 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.9e-06 55.1 90 35.6
Hma1.2p1_0525F.1_g172635 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.9e-06 55.1 75 38.7
Hma1.2p1_0973F.1_g242990 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 3.9e-06 55.1 75 38.7
CANSAT11G2486 Cannabis sativa HOM05D000017 ORTHO05D000013 5.1e-06 54.7 76 32.9
CANSAT80G0855 Cannabis sativa HOM05D000017 ORTHO05D000013 5.1e-06 54.7 76 32.9
ECA233G3796 Erigeron canadensis HOM05D003289 ORTHO05D004594 5.1e-06 54.7 76 32.9
Hma1.2p1_0257F.1_g103480 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 5.1e-06 54.7 65 40.0
Atru.chr11.363 Acer truncatum HOM05D000017 ORTHO05D000013 6.7e-06 54.3 76 36.8
Atru.chr9.1875 Acer truncatum HOM05D000017 ORTHO05D000013 6.7e-06 54.3 71 39.4
ECA238G0629 Erigeron canadensis HOM05D000017 ORTHO05D000013 6.7e-06 54.3 73 34.2
ECA248G3125 Erigeron canadensis HOM05D000017 ORTHO05D000013 6.7e-06 54.3 72 36.1
Hma1.2p1_0003F.1_g003700 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.7e-06 54.3 65 40.0
Hma1.2p1_0192F.1_g083640 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.7e-06 54.3 68 41.2
Hma1.2p1_0257F.1_g103550 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 6.7e-06 54.3 65 38.5
Rhsim07G0151200 Rhododendron simsii HOM05D000017 ORTHO05D000013 6.7e-06 54.3 76 36.8
TWI81G0891 Tripterygium wilfordii HOM05D000017 ORTHO05D000013 6.7e-06 54.3 73 41.1
Atru.chr9.880 Acer truncatum HOM05D000017 ORTHO05D000013 8.7e-06 53.9 73 37.0
CANSAT01G2010 Cannabis sativa HOM05D000017 ORTHO05D000013 8.7e-06 53.9 84 33.3
Hma1.2p1_0408F.1_g146530 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 8.7e-06 53.9 72 36.1
Hma1.2p1_1233F.1_g268990 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 8.7e-06 53.9 75 37.3
Hma1.2p1_3588F.1_g336910 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 8.7e-06 53.9 75 38.7
PGR102G0093 Punica granatum HOM05D000017 ORTHO05D000013 8.7e-06 53.9 73 35.6
QL04p086441 Quercus lobata HOM05D000017 ORTHO05D000013 8.7e-06 53.9 72 33.3
Rhsim01G0020300 Rhododendron simsii HOM05D000017 ORTHO05D000013 8.7e-06 53.9 65 38.5
Rhsim02G0019500 Rhododendron simsii HOM05D000017 ORTHO05D000013 8.7e-06 53.9 86 36.0
Sed0000137 Sechium edule HOM05D000017 ORTHO05D000013 8.7e-06 53.9 65 36.9
TPR.G40323 Trifolium pratense HOM05D000017 ORTHO05D000013 8.7e-06 53.9 72 34.7
VMungo0331G1062 Vigna mungo HOM05D000005 ORTHO05D000012 8.7e-06 53.9 71 38.0


User provided reference genes

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