Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 1.4e-229 799.3 399 100.0
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 6.0e-201 704.1 399 87.0
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 8.7e-184 647.1 399 81.0
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 5.3e-181 637.9 399 79.4
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 6.5e-179 630.9 399 78.9
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 9.3e-178 627.1 399 78.4
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 2.3e-176 622.5 344 88.4
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 8.2e-174 614.0 395 77.7
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 3.8e-171 605.1 397 75.8
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 3.2e-170 602.1 395 75.4
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 3.4e-164 582.0 397 74.3
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 1.7e-163 579.7 397 73.8
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 3.4e-156 555.4 397 68.5
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 2.5e-154 549.3 396 66.9
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 2.2e-150 536.2 400 64.2
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 1.2e-148 530.4 400 65.2
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 1.7e-147 526.6 400 64.0
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 8.5e-147 524.2 400 63.8
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.5e-146 522.7 400 62.8
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 3.2e-146 522.3 396 64.6
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 3.2e-146 522.3 400 63.0
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 3.2e-146 522.3 400 64.2
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 2.1e-145 519.6 400 62.8
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 2.1e-145 519.6 399 63.7
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 2.7e-145 519.2 389 65.8
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 2.7e-145 519.2 400 63.0
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 2.7e-145 519.2 398 65.3
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 4.7e-145 518.5 399 63.7
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.0e-144 517.3 399 63.4
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 1.4e-144 516.9 397 64.0
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.1e-143 513.8 400 61.8
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 2.6e-143 512.7 397 63.7
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 3.3e-143 512.3 391 63.9
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 4.4e-143 511.9 389 62.7
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 7.4e-143 511.1 397 63.0
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 9.7e-143 510.8 397 63.5
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 1.3e-142 510.4 390 63.1
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 2.2e-142 509.6 390 63.1
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 4.8e-142 508.4 402 62.9
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 1.4e-141 506.9 390 62.6
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 4.1e-141 505.4 391 64.2
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 4.1e-141 505.4 390 63.6
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 5.3e-141 505.0 401 62.6
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 1.2e-140 503.8 390 63.1
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 3.5e-140 502.3 390 62.1
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 4.5e-140 501.9 401 62.3
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 1.3e-139 500.4 399 59.6
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 2.9e-139 499.2 402 62.2
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 1.9e-138 496.5 395 61.0
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 7.2e-138 494.6 399 59.1
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 2.1e-137 493.0 389 60.4
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 2.7e-137 492.7 392 61.2
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 3.6e-137 492.3 399 59.6
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 4.7e-137 491.9 393 61.1
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 6.1e-137 491.5 397 60.5
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 2.8e-134 482.6 391 60.1
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 3.7e-134 482.3 392 60.2
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 8.3e-134 481.1 392 61.0
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 3.1e-133 479.2 377 62.6
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 3.1e-133 479.2 377 62.6
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 5.9e-132 474.9 391 57.5
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 5.9e-132 474.9 400 59.2
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 2.3e-128 463.0 393 59.3
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 3.4e-127 459.1 400 57.8
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 1.8e-125 453.4 394 56.3
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 3.1e-125 452.6 394 57.1
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 5.4e-125 451.8 394 56.1
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 9.1e-125 451.1 392 56.6
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 1.0e-123 447.6 375 58.7
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 2.3e-123 446.4 416 54.3
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 6.6e-123 444.9 396 55.6
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 2.1e-121 439.9 393 54.5
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 2.1e-121 439.9 392 54.3
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 2.1e-121 439.9 401 54.9
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 2.8e-121 439.5 397 55.4
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 8.0e-121 438.0 389 57.6
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 6.8e-120 434.9 393 54.5
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 3.4e-119 432.6 396 53.3
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 4.4e-119 432.2 397 53.9
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 4.4e-119 432.2 397 53.9
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 6.4e-118 428.3 397 53.4
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 6.4e-118 428.3 396 53.5
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 1.1e-117 427.6 397 53.4
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 5.6e-114 415.2 315 64.1
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 1.8e-112 410.2 383 55.9
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 3.1e-112 409.5 395 53.4
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 2.2e-110 403.3 371 54.4
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 3.7e-110 402.5 392 52.0
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 1.1e-109 401.0 396 49.7
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 9.2e-109 397.9 379 52.0
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 1.2e-108 397.5 363 57.6
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.3e-107 394.0 276 67.4
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 8.6e-107 391.3 360 52.5
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 1.3e-102 377.5 355 54.4
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 1.2e-95 354.4 386 50.8
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 9.9e-95 351.3 401 47.4
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 2.2e-94 350.1 247 68.4
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 1.5e-90 337.4 267 65.2
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 9.6e-90 334.7 389 41.4
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 2.7e-84 316.6 377 43.2
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 4.6e-84 315.8 263 59.7
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 5.4e-77 292.4 389 41.1
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 2.1e-76 290.4 193 72.5
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 3.3e-66 256.5 194 62.4
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 4.0e-64 249.6 248 50.4
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 4.2e-61 239.6 163 66.3
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.8e-57 226.9 199 60.3
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 1.7e-54 217.6 192 59.9
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 3.5e-52 209.9 201 55.2
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.9e-50 204.1 160 59.4
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 7.4e-50 202.2 237 45.6
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 4.2e-45 186.4 150 59.3
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.1e-43 179.5 135 58.5
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 8.8e-43 178.7 444 29.3
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 2.0e-39 167.5 155 56.8
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 3.4e-39 166.8 109 68.8
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 1.0e-38 165.2 413 28.6
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 8.5e-38 162.2 170 47.6
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 1.1e-37 161.8 147 57.8
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 1.2e-36 158.3 152 57.9
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 6.1e-36 156.0 216 40.7
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 2.0e-34 151.0 93 73.1
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 1.8e-32 144.4 369 30.1
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 6.1e-28 129.4 93 69.9
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.8e-27 127.9 96 62.5
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 3.0e-27 127.1 493 25.6
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 7.2e-21 105.9 227 32.6
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 3.0e-19 100.5 86 53.5
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 7.5e-18 95.9 195 35.9
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 7.5e-10 69.3 84 44.0
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 9.8e-10 68.9 72 52.8
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 4.9e-09 66.6 54 55.6
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 1.0e-06 58.9 97 42.3


User provided reference genes

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