Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0092s0060 Medicago truncatula HOM05D001320 ORTHO05D014204 4.8e-84 314.7 188 100.0
Medtr0092s0100 Medicago truncatula HOM05D001320 ORTHO05D002136 7.0e-83 310.8 185 100.0
Psat3g163480 Pisum sativum HOM05D001320 ORTHO05D002136 2.0e-69 266.2 188 75.5
TPR.G39098 Trifolium pratense HOM05D001320 ORTHO05D002136 2.0e-66 256.1 193 87.0
Ca_02613_v3 Cicer arietinum L. HOM05D001320 ORTHO05D002136 2.7e-42 176.0 208 69.2
VMungo1383G3366 Vigna mungo HOM05D001320 ORTHO05D002136 1.2e-31 140.6 204 60.3
Phvul.008G143400 Phaseolus vulgaris HOM05D001320 ORTHO05D002136 4.7e-31 138.7 204 59.8
Glyma.11G168219 Glycine max HOM05D001320 ORTHO05D002136 1.8e-30 136.7 198 61.6
Lj1g0000159 Lotus japonicus HOM05D001320 ORTHO05D002136 2.4e-30 136.3 197 48.7
Glyma.01G079500 Glycine max HOM05D001320 ORTHO05D002136 3.2e-27 125.9 204 58.8
Duzib138G0867 Durio zibethinus HOM05D001320 ORTHO05D002136 6.2e-23 111.7 197 53.8
FvH4_7g11120 Fragaria vesca HOM05D001320 ORTHO05D002136 4.0e-22 109.0 185 56.8
FAN06G2903 Fragaria x ananassa HOM05D001320 ORTHO05D002136 4.0e-22 109.0 185 56.8
FAN06G2625 Fragaria x ananassa HOM05D001320 ORTHO05D002136 6.9e-22 108.2 185 57.3
FAN10G1866 Fragaria x ananassa HOM05D001320 ORTHO05D002136 6.9e-22 108.2 185 56.8
FAN10G2195 Fragaria x ananassa HOM05D001320 ORTHO05D002136 6.9e-22 108.2 185 56.8
FAN03G3091 Fragaria x ananassa HOM05D001320 ORTHO05D002136 1.2e-21 107.5 178 57.3
CiPaw.14G025900 Carya illinoinensis HOM05D001320 ORTHO05D002136 2.0e-21 106.7 199 51.8
FAN01G1998 Fragaria x ananassa HOM05D001320 ORTHO05D002136 2.6e-21 106.3 185 56.2
Manes.05G048700 Manihot esculenta HOM05D001320 ORTHO05D002136 8.4e-20 101.3 202 51.0
QL04p038785 Quercus lobata HOM05D001320 ORTHO05D002136 8.4e-20 101.3 186 54.8
RcHm_v2.0_Chr1g0349141 Rosa chinensis HOM05D001320 ORTHO05D002136 8.4e-20 101.3 176 56.8
Cpa.g.sc49.157 Carica papaya HOM05D001320 ORTHO05D002136 1.4e-19 100.5 181 47.5
CiPaw.13G032700 Carya illinoinensis HOM05D001320 ORTHO05D002136 7.1e-19 98.2 200 52.0
Lalb_Chr13g0291841 Lupinus albus HOM05D001320 ORTHO05D002136 4.6e-18 95.5 195 39.0
Gohir.A12G094601 Gossypium hirsutum HOM05D001320 ORTHO05D002136 3.0e-17 92.8 187 49.7
Potri.014G060500 Populus trichocarpa HOM05D001320 ORTHO05D002136 3.0e-17 92.8 177 53.1
Potri.002G144200 Populus trichocarpa HOM05D001320 ORTHO05D002136 6.6e-17 91.7 179 49.2
MD02G1210200 Malus domestica HOM05D001320 ORTHO05D002136 3.3e-16 89.4 186 44.6
Sabra14G0044400 Salix brachista HOM05D001320 ORTHO05D002136 7.3e-16 88.2 182 51.6
MD07G1115800 Malus domestica HOM05D001320 ORTHO05D002136 9.6e-16 87.8 183 41.0
COL.COLO4_12492 Corchorus olitorius HOM05D001320 ORTHO05D002136 3.6e-15 85.9 194 49.0
Phvul.010G072700 Phaseolus vulgaris HOM05D001320 ORTHO05D002136 8.1e-15 84.7 184 37.0
QL04p038841 Quercus lobata HOM05D001320 ORTHO05D002136 1.1e-14 84.3 189 42.9
Potri.002G144700 Populus trichocarpa HOM05D001320 ORTHO05D002136 1.8e-14 83.6 184 49.5
Sabra14G0044100 Salix brachista HOM05D001320 ORTHO05D002136 3.1e-14 82.8 178 50.6
VMungo0331G0016 Vigna mungo HOM05D001320 ORTHO05D002136 4.0e-14 82.4 194 36.1
Dinv44121 Davidia involucrata HOM05D001320 ORTHO05D002136 1.5e-13 80.5 232 40.5
Ciclev10019094m.g Citrus clementina HOM05D001320 ORTHO05D002136 2.6e-13 79.7 183 50.8
TWI59G0954 Tripterygium wilfordii HOM05D001320 ORTHO05D002136 9.9e-13 77.8 208 45.7
TWI14G0097 Tripterygium wilfordii HOM05D001320 ORTHO05D002136 1.7e-12 77.0 199 48.2
Thecc.01G382400 Theobroma cacao HOM05D001320 ORTHO05D002136 2.2e-12 76.6 193 47.7
CANSAT56G4031 Cannabis sativa HOM05D001320 ORTHO05D002136 2.9e-12 76.3 201 31.3
Sabra02G0112600 Salix brachista HOM05D001320 ORTHO05D002136 4.9e-12 75.5 181 43.6
CANSAT56G4337 Cannabis sativa HOM05D001320 ORTHO05D002136 6.4e-12 75.1 201 31.3
Gorai.008G106000 Gossypium raimondii HOM05D001320 ORTHO05D002136 6.4e-12 75.1 187 47.6
Cfa011171 Carpinus fangiana HOM05D001320 ORTHO05D002136 8.4e-12 74.7 221 45.2
Lalb_Chr12g0207921 Lupinus albus HOM05D001320 ORTHO05D002136 8.4e-12 74.7 173 37.0
Atru.chr5.254 Acer truncatum HOM05D001320 ORTHO05D002136 1.4e-11 73.9 95 46.3
Gohir.D12G097300 Gossypium hirsutum HOM05D001320 ORTHO05D002136 1.9e-11 73.6 188 46.3
TWI23G0829 Tripterygium wilfordii HOM05D001320 ORTHO05D002136 1.9e-11 73.6 206 48.1
THA.LOC104817010 Tarenaya hassleriana HOM05D001320 ORTHO05D002136 1.2e-10 70.9 181 44.2
CANSAT56G3983 Cannabis sativa HOM05D001320 ORTHO05D002136 1.6e-10 70.5 77 49.4
Haze_02678 Corylus avellana HOM05D001320 ORTHO05D002136 1.6e-10 70.5 227 43.6
VMungo0331G1322 Vigna mungo HOM05D001320 ORTHO05D002136 1.6e-10 70.5 200 45.5
Glyma.01G136300 Glycine max HOM05D001320 ORTHO05D002136 2.1e-10 70.1 194 46.4
Glyma.03G031800 Glycine max HOM05D001320 ORTHO05D002136 4.6e-10 68.9 191 48.2
Lj3g0003192 Lotus japonicus HOM05D001320 ORTHO05D002136 4.6e-10 68.9 185 36.8
Phvul.010G072900 Phaseolus vulgaris HOM05D001320 ORTHO05D002136 4.6e-10 68.9 189 46.0
Potri.014G060200 Populus trichocarpa HOM05D001320 ORTHO05D002136 4.6e-10 68.9 177 48.6
Ca_19834_v3 Cicer arietinum L. HOM05D001320 ORTHO05D002136 6.0e-10 68.6 192 42.7
Lalb_Chr12g0207931 Lupinus albus HOM05D001320 ORTHO05D002136 1.3e-09 67.4 200 39.5
CSS0037771 Camellia sinensis var. sinensis HOM05D001320 ORTHO05D002136 1.8e-09 67.0 199 35.7
PGR042G0628 Punica granatum HOM05D001320 ORTHO05D002136 3.0e-09 66.2 183 39.3
TPR.G5027 Trifolium pratense HOM05D001320 ORTHO05D002136 3.0e-09 66.2 198 42.4
QL12p012621 Quercus lobata HOM05D001320 ORTHO05D002136 5.1e-09 65.5 80 45.0
Duzib133G0024 Durio zibethinus HOM05D001320 ORTHO05D002136 8.7e-09 64.7 65 63.1
Medtr4g026485 Medicago truncatula HOM05D001320 ORTHO05D002136 8.7e-09 64.7 189 39.7
CSS0048675 Camellia sinensis var. sinensis HOM05D001320 ORTHO05D002136 1.5e-08 63.9 199 35.2
arahy.Tifrunner.gnm1.ann1.IIU33D Arachis hypogaea HOM05D001320 ORTHO05D002136 4.3e-08 62.4 221 40.3
Eucgr.E01510 Eucalyptus grandis HOM05D001320 ORTHO05D002136 7.4e-08 61.6 89 48.3
vmacro13439 Vaccinium macrocarpon HOM05D001320 ORTHO05D002136 9.6e-08 61.2 206 39.8
MSTRG.17163 Avicennia marina HOM05D001320 ORTHO05D002136 1.3e-07 60.8 217 35.0
Lj7P535T15 Lonicera japonica HOM05D001320 ORTHO05D014204 1.3e-07 60.8 99 43.4
Gohir.D08G190500 Gossypium hirsutum HOM05D001320 ORTHO05D002136 1.6e-07 60.5 86 43.0
Oeu032183.1 Olea europaea HOM05D001320 ORTHO05D002136 1.6e-07 60.5 84 44.0
Ciclev10019083m.g Citrus clementina HOM05D001320 ORTHO05D002136 2.1e-07 60.1 66 56.1
CsaV3_6G009170 Cucumis sativus L. HOM05D001320 ORTHO05D002136 2.1e-07 60.1 197 41.6
Lj3g0015276 Lotus japonicus HOM05D001320 ORTHO05D002136 2.1e-07 60.1 197 41.6
Oeu064173.2 Olea europaea HOM05D001320 ORTHO05D002136 2.8e-07 59.7 77 44.2
GSVIVG01027680001 Vitis vinifera HOM05D001320 ORTHO05D002136 2.8e-07 59.7 73 56.2
Atru.chr5.256 Acer truncatum HOM05D001320 ORTHO05D002136 3.7e-07 59.3 84 46.4
Gohir.A12G220100 Gossypium hirsutum HOM05D001320 ORTHO05D002136 3.7e-07 59.3 79 44.3
Gorai.004G200600 Gossypium raimondii HOM05D001320 ORTHO05D002136 6.2e-07 58.5 86 41.9
QL04p038815 Quercus lobata HOM05D001320 ORTHO05D002136 6.2e-07 58.5 73 50.7
ClCG06G003050 Citrullus lanatus HOM05D001320 ORTHO05D002136 8.1e-07 58.2 189 42.3
Duzib205G1927 Durio zibethinus HOM05D001320 ORTHO05D002136 8.1e-07 58.2 79 44.3
FAN08G3518 Fragaria x ananassa HOM05D001320 ORTHO05D002136 8.1e-07 58.2 82 47.6
FAN18G2925 Fragaria x ananassa HOM05D001320 ORTHO05D002136 8.1e-07 58.2 82 47.6
Gohir.D12G222300 Gossypium hirsutum HOM05D001320 ORTHO05D002136 8.1e-07 58.2 79 44.3
Gorai.008G238300 Gossypium raimondii HOM05D001320 ORTHO05D002136 8.1e-07 58.2 79 44.3
MELO3C021146.2 Cucumis melo HOM05D001320 ORTHO05D002136 1.4e-06 57.4 71 53.5
Thecc.03G253700 Theobroma cacao HOM05D001320 ORTHO05D002136 1.4e-06 57.4 80 45.0
Oeu000018.2 Olea europaea HOM05D001320 ORTHO05D002136 2.4e-06 56.6 68 45.6
Rhsim07G0030900 Rhododendron simsii HOM05D001320 ORTHO05D002136 2.4e-06 56.6 203 38.4
Actinidia18728 Actinidia chinensis HOM05D001320 ORTHO05D002136 3.1e-06 56.2 79 44.3
Haze_07886 Corylus avellana HOM05D001320 ORTHO05D002136 3.1e-06 56.2 81 43.2
Dinv43675 Davidia involucrata HOM05D001320 ORTHO05D002136 3.1e-06 56.2 75 50.7
FAN04G0481 Fragaria x ananassa HOM05D001320 ORTHO05D002136 4.0e-06 55.8 82 47.6
Nitab4.5_0000859g0260 Nicotiana tabacum HOM05D001320 ORTHO05D002136 4.0e-06 55.8 93 45.2
Eucgr.E01509 Eucalyptus grandis HOM05D001320 ORTHO05D002136 6.9e-06 55.1 79 49.4
Gohir.D12G097400 Gossypium hirsutum HOM05D001320 ORTHO05D002136 6.9e-06 55.1 195 37.9
Actinidia12187 Actinidia chinensis HOM05D001320 ORTHO05D002136 9.0e-06 54.7 58 50.0
Oeu004549.1 Olea europaea HOM05D001320 ORTHO05D002136 9.0e-06 54.7 70 48.6


User provided reference genes

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