Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0060s0090 Medicago truncatula HOM05D012399 ORTHO05D007522 8.7e-87 323.6 158 100.0
Medtr6g463250 Medicago truncatula HOM05D012399 ORTHO05D007522 1.0e-63 246.9 184 71.7
TPR.G39767 Trifolium pratense HOM05D000045 ORTHO05D007522 1.4e-31 140.2 86 70.9
Medtr1g070355 Medicago truncatula HOM05D000045 ORTHO05D007522 6.2e-24 114.8 94 53.2
TPR.G36052 Trifolium pratense HOM05D000045 ORTHO05D007522 2.0e-22 109.8 84 56.0
TPR.G600 Trifolium pratense HOM05D000045 ORTHO05D007522 4.4e-22 108.6 94 53.2
TPR.G36375 Trifolium pratense HOM05D012399 ORTHO05D007522 2.0e-19 99.8 88 50.0
Lj4g0016999 Lotus japonicus HOM05D000045 ORTHO05D007522 2.7e-19 99.4 81 51.9
TPR.G17630 Trifolium pratense HOM05D000045 ORTHO05D000067 2.7e-19 99.4 116 44.0
TPR.G2699 Trifolium pratense HOM05D000045 ORTHO05D000067 3.5e-19 99.0 94 47.9
Lj4g0021877 Lotus japonicus HOM05D000045 ORTHO05D000067 6.0e-19 98.2 84 53.6
Lj1g0004807 Lotus japonicus HOM05D000045 ORTHO05D000067 1.0e-18 97.4 84 52.4
Lj6g0007124 Lotus japonicus HOM05D000045 ORTHO05D000067 3.0e-18 95.9 98 48.0
Lj1g0011931 Lotus japonicus HOM05D012399 ORTHO05D007522 1.1e-17 94.0 122 40.2
TPR.G25074 Trifolium pratense HOM05D012399 ORTHO05D007522 3.3e-17 92.4 84 50.0
TPR.G9983 Trifolium pratense HOM05D000045 ORTHO05D007522 2.8e-16 89.4 131 36.6
Lj2g0009070 Lotus japonicus HOM05D000045 ORTHO05D000067 3.6e-16 89.0 112 41.1
Psat6g085800 Pisum sativum HOM05D021955 ORTHO05D007522 3.6e-16 89.0 107 41.1
Glyma.10G121700 Glycine max HOM05D000045 ORTHO05D000067 1.8e-15 86.7 86 50.0
Lj2g0009580 Lotus japonicus HOM05D000045 ORTHO05D007522 1.8e-15 86.7 84 45.2
Medtr2g101460 Medicago truncatula HOM05D008512 ORTHO05D007522 6.8e-15 84.7 82 43.9
TPR.G37658 Trifolium pratense HOM05D000045 ORTHO05D000067 1.2e-14 84.0 82 47.6
Glyma.18G179400 Glycine max HOM05D000045 ORTHO05D000067 1.5e-14 83.6 85 44.7
Lj1g0021005 Lotus japonicus HOM05D000045 ORTHO05D007522 1.5e-14 83.6 84 44.0
Lj4g0026725 Lotus japonicus HOM05D012399 ORTHO05D007522 2.0e-14 83.2 79 45.6
Lj1g0017039 Lotus japonicus HOM05D000045 ORTHO05D007522 2.6e-14 82.8 116 39.7
arahy.Tifrunner.gnm1.ann1.Z9H0PS Arachis hypogaea HOM05D000045 ORTHO05D000067 4.4e-14 82.0 94 44.7
Glyma.01G202900 Glycine max HOM05D000045 ORTHO05D000067 9.8e-14 80.9 84 47.6
arahy.Tifrunner.gnm1.ann1.VI37WY Arachis hypogaea HOM05D000045 ORTHO05D007522 1.3e-13 80.5 127 40.2
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.7e-13 80.1 76 43.4
Lj6g0023979 Lotus japonicus HOM05D058933 ORTHO05D007522 1.7e-13 80.1 82 43.9
LjContig00413g0001833 Lotus japonicus HOM05D014238 ORTHO05D015703 1.7e-13 80.1 86 44.2
Glyma.13G000732 Glycine max HOM05D008512 ORTHO05D007522 2.9e-13 79.3 86 44.2
Medtr5g076070 Medicago truncatula HOM05D000045 ORTHO05D007522 2.9e-13 79.3 126 34.1
Lj1g0023623 Lotus japonicus HOM05D000045 ORTHO05D007522 4.9e-13 78.6 79 41.8
TPR.G29715 Trifolium pratense HOM05D000045 ORTHO05D007522 6.4e-13 78.2 82 40.2
Medtr3g448650 Medicago truncatula HOM05D008512 ORTHO05D007522 8.3e-13 77.8 74 43.2
arahy.Tifrunner.gnm1.ann1.70KCRG Arachis hypogaea HOM05D000045 ORTHO05D007522 3.2e-12 75.9 113 38.9
Medtr6g053140 Medicago truncatula HOM05D015175 ORTHO05D007522 3.2e-12 75.9 127 33.1
Lj4g0024414 Lotus japonicus HOM05D012399 ORTHO05D007522 4.6e-11 72.0 68 44.1
TPR.G21949 Trifolium pratense HOM05D008512 ORTHO05D007522 4.6e-11 72.0 116 38.8
arahy.Tifrunner.gnm1.ann1.N9AV22 Arachis hypogaea HOM05D010283 ORTHO05D013006 6.0e-11 71.6 79 44.3
TPR.G40841 Trifolium pratense HOM05D000045 ORTHO05D007522 6.0e-11 71.6 131 33.6
Lj3g0025415 Lotus japonicus HOM05D000045 ORTHO05D007522 7.8e-11 71.2 81 42.0
LjContig00302g0011664 Lotus japonicus HOM05D000045 ORTHO05D007522 7.8e-11 71.2 81 42.0
Medtr1g052260 Medicago truncatula HOM05D008512 ORTHO05D007522 1.3e-10 70.5 100 37.0
arahy.Tifrunner.gnm1.ann1.C3RRT9 Arachis hypogaea HOM05D036178 ORTHO05D007522 1.7e-10 70.1 83 41.0
arahy.Tifrunner.gnm1.ann1.MU2UU0 Arachis hypogaea HOM05D010283 ORTHO05D013006 2.3e-10 69.7 79 43.0
arahy.Tifrunner.gnm1.ann1.W8SRLW Arachis hypogaea HOM05D000045 ORTHO05D007522 2.3e-10 69.7 87 43.7
Lj5g0009547 Lotus japonicus HOM05D012399 ORTHO05D007522 2.3e-10 69.7 79 43.0
TPR.G9519 Trifolium pratense HOM05D000045 ORTHO05D000067 2.3e-10 69.7 117 38.5
TWI18G0819 Tripterygium wilfordii HOM05D000045 ORTHO05D000067 3.0e-10 69.3 79 44.3
arahy.Tifrunner.gnm1.ann1.YPLZ25 Arachis hypogaea HOM05D000045 ORTHO05D000067 3.9e-10 68.9 86 36.0
Glyma.04G186100 Glycine max HOM05D012399 ORTHO05D007522 5.1e-10 68.6 73 39.7
arahy.Tifrunner.gnm1.ann1.8433TV Arachis hypogaea HOM05D010283 ORTHO05D013006 8.6e-10 67.8 81 40.7
arahy.Tifrunner.gnm1.ann1.E92V9Y Arachis hypogaea HOM05D000045 ORTHO05D013006 8.6e-10 67.8 79 41.8
arahy.Tifrunner.gnm1.ann1.RPVA7B Arachis hypogaea HOM05D000045 ORTHO05D000067 1.1e-09 67.4 86 36.0
arahy.Tifrunner.gnm1.ann1.9K8J5U Arachis hypogaea HOM05D008512 ORTHO05D007522 1.5e-09 67.0 143 35.0
Lj1g0005898 Lotus japonicus HOM05D014238 ORTHO05D015703 1.5e-09 67.0 72 44.4
Medtr4g050510 Medicago truncatula HOM05D000045 ORTHO05D007522 2.5e-09 66.2 142 33.8
Lj6g0017880 Lotus japonicus HOM05D000045 ORTHO05D007522 3.3e-09 65.9 122 36.1
Lj6g0003423 Lotus japonicus HOM05D009753 ORTHO05D010597 5.6e-09 65.1 104 37.5
PSO063G0395 Papaver somniferum HOM05D000045 ORTHO05D000067 5.6e-09 65.1 110 39.1
arahy.Tifrunner.gnm1.ann1.G6Y5VA Arachis hypogaea HOM05D000045 ORTHO05D000067 9.5e-09 64.3 104 32.7
Atru.chr4.298 Acer truncatum HOM05D000045 ORTHO05D000067 1.2e-08 63.9 80 37.5
arahy.Tifrunner.gnm1.ann1.D3CBRA Arachis hypogaea HOM05D005194 ORTHO05D010597 1.2e-08 63.9 159 31.4
Lj5g0006079 Lotus japonicus HOM05D000045 ORTHO05D003357 1.2e-08 63.9 80 41.2
Atru.chr13.1929 Acer truncatum HOM05D000045 ORTHO05D000067 1.6e-08 63.5 115 30.4
Lj3g0008758 Lotus japonicus HOM05D009753 ORTHO05D010597 1.6e-08 63.5 134 35.1
Lj5g0006970 Lotus japonicus HOM05D009753 ORTHO05D010597 1.6e-08 63.5 134 35.1
Atru.chr8.2 Acer truncatum HOM05D000045 ORTHO05D010597 2.8e-08 62.8 115 30.4
COL.COLO4_26685 Corchorus olitorius HOM05D000045 ORTHO05D000067 2.8e-08 62.8 77 40.3
TPR.G40266 Trifolium pratense HOM05D000045 ORTHO05D007522 2.8e-08 62.8 71 39.4
Lj1g0001785 Lotus japonicus HOM05D000045 ORTHO05D007788 3.6e-08 62.4 80 40.0
Lj3g0015805 Lotus japonicus HOM05D005194 ORTHO05D003357 3.6e-08 62.4 80 40.0
Lj3g0023941 Lotus japonicus HOM05D005194 ORTHO05D003357 3.6e-08 62.4 80 40.0
Lj4g0015383 Lotus japonicus HOM05D000045 ORTHO05D000067 3.6e-08 62.4 80 40.0
Medtr0604s0020 Medicago truncatula HOM05D008512 ORTHO05D007522 3.6e-08 62.4 74 37.8
Thecc.04G055700 Theobroma cacao HOM05D000045 ORTHO05D003357 3.6e-08 62.4 80 40.0
arahy.Tifrunner.gnm1.ann1.8SNE72 Arachis hypogaea HOM05D000045 ORTHO05D007522 6.2e-08 61.6 77 44.2
Lj6g0022528 Lotus japonicus HOM05D005194 ORTHO05D010597 6.2e-08 61.6 134 34.3
Rhsim04G0115100 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.2e-08 61.6 93 36.6
arahy.Tifrunner.gnm1.ann1.U80MXJ Arachis hypogaea HOM05D000045 ORTHO05D000067 8.1e-08 61.2 151 31.1
MBI10_g43911_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D000611 8.1e-08 61.2 77 37.7
Os03g0164400 Oryza sativa ssp. japonica HOM05D000045 ORTHO05D000067 8.1e-08 61.2 81 38.3
Thecc.02G099900 Theobroma cacao HOM05D045304 ORTHO05D003357 8.1e-08 61.2 80 40.0
Rhsim11G0186200 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.1e-07 60.8 83 37.3
TPR.G9165 Trifolium pratense HOM05D000045 ORTHO05D007522 1.1e-07 60.8 96 35.4
arahy.Tifrunner.gnm1.ann1.R9E33Q Arachis hypogaea HOM05D008512 ORTHO05D007522 1.4e-07 60.5 80 40.0
Lj2g0025478 Lotus japonicus HOM05D009753 ORTHO05D010597 1.4e-07 60.5 134 29.1
Atru.chr3.1746 Acer truncatum HOM05D000045 ORTHO05D000067 1.8e-07 60.1 133 27.1
Ciclev10018266m.g Citrus clementina HOM05D005194 ORTHO05D010597 3.1e-07 59.3 122 31.1
Rhsim01G0208000 Rhododendron simsii HOM05D000045 ORTHO05D000067 3.1e-07 59.3 70 41.4
Medtr6g022080 Medicago truncatula HOM05D015175 ORTHO05D007522 4.0e-07 58.9 81 35.8
PSO170G0920 Papaver somniferum HOM05D000045 ORTHO05D000067 4.0e-07 58.9 102 36.3
Nn2g15037 Nelumbo nucifera HOM05D000045 ORTHO05D000067 5.2e-07 58.5 80 37.5
Rhsim05G0138000 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.2e-07 58.5 121 32.2
Rhsim09G0031000 Rhododendron simsii HOM05D000045 ORTHO05D012126 5.2e-07 58.5 103 33.0
arahy.Tifrunner.gnm1.ann1.B1LYNA Arachis hypogaea HOM05D005194 ORTHO05D003357 6.8e-07 58.2 80 37.5
Rhsim02G0102200 Rhododendron simsii HOM05D000045 ORTHO05D000067 6.8e-07 58.2 83 37.3
arahy.Tifrunner.gnm1.ann1.0Z3BG5 Arachis hypogaea HOM05D005194 ORTHO05D003357 8.9e-07 57.8 78 37.2
MBI06_g15025_MAGBIO Magnolia biondii HOM05D000045 ORTHO05D000611 8.9e-07 57.8 77 37.7
Manes.02G117425 Manihot esculenta HOM05D000045 ORTHO05D000067 8.9e-07 57.8 82 39.0
Medtr7g028855 Medicago truncatula HOM05D005194 ORTHO05D009139 8.9e-07 57.8 78 35.9
PSO528G0229 Papaver somniferum HOM05D000045 ORTHO05D000067 8.9e-07 57.8 102 35.3
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 8.9e-07 57.8 124 30.6
arahy.Tifrunner.gnm1.ann1.KJ2SKP Arachis hypogaea HOM05D005194 ORTHO05D003357 1.2e-06 57.4 80 37.5
Lj3g0000730 Lotus japonicus HOM05D000045 ORTHO05D010597 1.2e-06 57.4 128 35.2
Lj4g0013460 Lotus japonicus HOM05D005194 ORTHO05D010597 1.2e-06 57.4 142 30.3
arahy.Tifrunner.gnm1.ann1.1078FM Arachis hypogaea HOM05D005194 ORTHO05D003357 1.5e-06 57.0 80 36.2
arahy.Tifrunner.gnm1.ann1.7M8RAR Arachis hypogaea HOM05D005194 ORTHO05D003357 1.5e-06 57.0 80 36.2
arahy.Tifrunner.gnm1.ann1.FPY4AL Arachis hypogaea HOM05D005194 ORTHO05D003357 1.5e-06 57.0 80 37.5
arahy.Tifrunner.gnm1.ann1.Z72PVB Arachis hypogaea HOM05D008512 ORTHO05D007522 1.5e-06 57.0 77 41.6
Glyma.16G118200 Glycine max HOM05D012399 ORTHO05D007522 1.5e-06 57.0 63 49.2
Rhsim05G0213300 Rhododendron simsii HOM05D000045 ORTHO05D000067 1.5e-06 57.0 80 35.0
TPR.G23136 Trifolium pratense HOM05D000045 ORTHO05D010597 1.5e-06 57.0 71 36.6
CSS0020853 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.0e-06 56.6 82 34.1
Eucgr.H01407 Eucalyptus grandis HOM05D000045 ORTHO05D000067 2.0e-06 56.6 79 38.0
Atru.chr7.126 Acer truncatum HOM05D000045 ORTHO05D026263 2.6e-06 56.2 80 35.0
arahy.Tifrunner.gnm1.ann1.BQ3TTJ Arachis hypogaea HOM05D005194 ORTHO05D003357 2.6e-06 56.2 80 36.2
arahy.Tifrunner.gnm1.ann1.RA4NX7 Arachis hypogaea HOM05D005194 ORTHO05D003357 2.6e-06 56.2 75 37.3
Lj4g0003455 Lotus japonicus HOM05D000045 ORTHO05D003357 2.6e-06 56.2 73 39.7
Lj6g0009990 Lotus japonicus HOM05D005194 ORTHO05D003357 2.6e-06 56.2 73 39.7
Lj6g0018942 Lotus japonicus HOM05D000045 ORTHO05D000067 2.6e-06 56.2 73 39.7
LjContig00126g0012758 Lotus japonicus HOM05D000045 ORTHO05D000067 2.6e-06 56.2 73 39.7
Rhsim02G0142300 Rhododendron simsii HOM05D000045 ORTHO05D000067 2.6e-06 56.2 83 36.1
Actinidia02450 Actinidia chinensis HOM05D000045 ORTHO05D000067 3.4e-06 55.8 87 34.5
arahy.Tifrunner.gnm1.ann1.AI9FJE Arachis hypogaea HOM05D005194 ORTHO05D003357 3.4e-06 55.8 80 35.0
arahy.Tifrunner.gnm1.ann1.G8EG78 Arachis hypogaea HOM05D005194 ORTHO05D003357 3.4e-06 55.8 80 36.2
arahy.Tifrunner.gnm1.ann1.RDS1N3 Arachis hypogaea HOM05D005194 ORTHO05D003357 3.4e-06 55.8 80 36.2
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 3.4e-06 55.8 79 36.7
HPP92_009513 Vanilla planifolia HOM05D000045 ORTHO05D000611 3.4e-06 55.8 98 34.7
Atru.chr7.367 Acer truncatum HOM05D000045 ORTHO05D012261 4.4e-06 55.5 80 31.2
Aqoxy5G02678 Aquilegia oxysepala HOM05D009753 ORTHO05D007522 4.4e-06 55.5 109 34.9
arahy.Tifrunner.gnm1.ann1.8B7JRK Arachis hypogaea HOM05D008512 ORTHO05D007522 4.4e-06 55.5 81 33.3
arahy.Tifrunner.gnm1.ann1.PMV3RA Arachis hypogaea HOM05D005194 ORTHO05D003357 4.4e-06 55.5 75 36.0
arahy.Tifrunner.gnm1.ann1.RH7XCG Arachis hypogaea HOM05D005194 ORTHO05D003357 4.4e-06 55.5 80 36.2
Psat5g135360 Pisum sativum HOM05D000045 ORTHO05D001346 4.4e-06 55.5 105 33.3
RcHm_v2.0_Chr2g0118661 Rosa chinensis HOM05D018304 ORTHO05D022576 4.4e-06 55.5 79 38.0
TPR.G24615 Trifolium pratense HOM05D000045 ORTHO05D000067 4.4e-06 55.5 81 38.3
arahy.Tifrunner.gnm1.ann1.710GGN Arachis hypogaea HOM05D005194 ORTHO05D003357 5.8e-06 55.1 124 31.5
arahy.Tifrunner.gnm1.ann1.QN1KDE Arachis hypogaea HOM05D005194 ORTHO05D003357 5.8e-06 55.1 136 28.7
CANSAT25G3790 Cannabis sativa HOM05D000045 ORTHO05D000067 5.8e-06 55.1 80 32.5
COL.COLO4_33921 Corchorus olitorius HOM05D000045 ORTHO05D000611 5.8e-06 55.1 78 37.2
Lj1g0005830 Lotus japonicus HOM05D000045 ORTHO05D003357 5.8e-06 55.1 70 40.0
RhsimUnG0161100 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.8e-06 55.1 70 40.0
RhsimUnG0178400 Rhododendron simsii HOM05D000045 ORTHO05D000067 5.8e-06 55.1 70 40.0
Atru.chr8.352 Acer truncatum HOM05D000045 ORTHO05D012261 7.6e-06 54.7 89 32.6
Actinidia09788 Actinidia chinensis HOM05D000045 ORTHO05D001346 7.6e-06 54.7 84 39.3
CANSAT78G1377 Cannabis sativa HOM05D000045 ORTHO05D000611 7.6e-06 54.7 77 36.4
Rhsim04G0161500 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.6e-06 54.7 70 40.0
Rhsim05G0159900 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.6e-06 54.7 94 37.2
Rhsim10G0060900 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.6e-06 54.7 70 41.4
RcHm_v2.0_Chr2g0118731 Rosa chinensis HOM05D005194 ORTHO05D010597 7.6e-06 54.7 76 38.2
TPR.G28587 Trifolium pratense HOM05D000045 ORTHO05D003357 7.6e-06 54.7 81 33.3
TPR.G9545 Trifolium pratense HOM05D000045 ORTHO05D000067 7.6e-06 54.7 81 37.0
HPP92_019288 Vanilla planifolia HOM05D000045 ORTHO05D000067 7.6e-06 54.7 98 33.7
Aa31LG1G4400 Aethionema arabicum HOM05D000045 ORTHO05D001346 9.9e-06 54.3 84 39.3
Ciclev10024536m.g Citrus clementina HOM05D000045 ORTHO05D000067 9.9e-06 54.3 123 27.6


User provided reference genes

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