Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0041s0080 Medicago truncatula HOM05D003571 ORTHO05D036750 1.6e-103 379.4 194 100.0
Medtr7g101360 Medicago truncatula HOM05D003571 ORTHO05D036750 2.2e-100 369.0 210 92.4
Medtr0041s0030 Medicago truncatula HOM05D003571 ORTHO05D004193 7.5e-48 194.5 262 48.5
Ca_08847_v3 Cicer arietinum L. HOM05D003571 ORTHO05D004193 8.3e-47 191.0 257 47.5
TPR.G16043 Trifolium pratense HOM05D003571 ORTHO05D004193 3.5e-45 185.7 254 46.9
Psat3g041280 Pisum sativum HOM05D003571 ORTHO05D004193 1.6e-42 176.8 258 45.7
Lj1g0021596 Lotus japonicus HOM05D003571 ORTHO05D004193 1.5e-35 153.7 266 39.1
Phvul.001G177500 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 6.8e-33 144.8 259 38.2
Glyma.03G181400 Glycine max HOM05D003571 ORTHO05D004193 2.6e-32 142.9 241 39.8
VMungo0720G3123 Vigna mungo HOM05D003571 ORTHO05D004193 9.8e-32 141.0 268 36.6
Phvul.007G150600 Phaseolus vulgaris HOM05D003571 ORTHO05D004193 2.9e-31 139.4 265 36.2
VMungo1383G0779 Vigna mungo HOM05D003571 ORTHO05D004193 8.3e-31 137.9 259 37.8
Lj5g0026041 Lotus japonicus HOM05D003571 ORTHO05D004193 1.1e-30 137.5 269 35.7
Lalb_Chr25g0289091 Lupinus albus HOM05D003571 ORTHO05D004193 2.7e-29 132.9 274 36.5
Glyma.13G145100 Glycine max HOM05D003571 ORTHO05D004193 7.8e-29 131.3 268 36.2
arahy.Tifrunner.gnm1.ann1.SVA4CI Arachis hypogaea HOM05D003571 ORTHO05D004193 2.5e-27 126.3 264 36.0
Glyma.10G058300 Glycine max HOM05D003571 ORTHO05D004193 2.5e-27 126.3 269 34.6
arahy.Tifrunner.gnm1.ann1.QCG7AI Arachis hypogaea HOM05D003571 ORTHO05D004193 5.6e-27 125.2 264 36.0
arahy.Tifrunner.gnm1.ann1.4G0IWV Arachis hypogaea HOM05D003571 ORTHO05D004193 4.7e-26 122.1 264 35.2
GSVIVG01025700001 Vitis vinifera HOM05D003571 ORTHO05D004193 1.1e-25 120.9 225 36.4
arahy.Tifrunner.gnm1.ann1.W3VJBC Arachis hypogaea HOM05D003571 ORTHO05D004193 2.3e-25 119.8 264 34.8
Dinv37294 Davidia involucrata HOM05D003571 ORTHO05D004193 6.8e-25 118.2 271 33.2
MELO3C014230.2 Cucumis melo HOM05D003571 ORTHO05D004193 2.0e-24 116.7 260 36.5
ClCG04G009140 Citrullus lanatus HOM05D003571 ORTHO05D004193 3.4e-24 115.9 260 36.5
TPR.G16046 Trifolium pratense HOM05D003571 ORTHO05D036750 1.7e-23 113.6 142 50.0
CsaV3_6G039650 Cucumis sativus L. HOM05D003571 ORTHO05D004193 2.2e-23 113.2 260 35.4
Actinidia19664 Actinidia chinensis HOM05D003571 ORTHO05D004193 3.8e-23 112.5 266 33.1
Cfa017571 Carpinus fangiana HOM05D003571 ORTHO05D004193 1.4e-22 110.5 272 31.2
Sed0010243 Sechium edule HOM05D003571 ORTHO05D004193 2.1e-21 106.7 261 34.1
Dinv35764 Davidia involucrata HOM05D003571 ORTHO05D004193 1.0e-20 104.4 275 32.0
Haze_20580 Corylus avellana HOM05D003571 ORTHO05D004193 2.3e-20 103.2 271 30.3
Oeu016972.1 Olea europaea HOM05D003571 ORTHO05D004193 2.3e-20 103.2 213 34.7
Sed0017601 Sechium edule HOM05D003571 ORTHO05D004193 2.3e-20 103.2 260 32.3
QL07p044235 Quercus lobata HOM05D003571 ORTHO05D004193 5.1e-20 102.1 271 28.4
Potri.006G127100 Populus trichocarpa HOM05D003571 ORTHO05D004193 6.6e-20 101.7 271 31.0
Actinidia31342 Actinidia chinensis HOM05D003571 ORTHO05D004193 1.1e-19 100.9 269 29.4
TAR369G1024 Trochodendron aralioides HOM05D003571 ORTHO05D004193 3.3e-19 99.4 272 30.1
Medtr2g062640 Medicago truncatula HOM05D003571 ORTHO05D004193 4.3e-19 99.0 74 70.3
TWI74G0293 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 4.3e-19 99.0 272 30.9
Potri.016G090800 Populus trichocarpa HOM05D003571 ORTHO05D004193 5.6e-19 98.6 270 30.0
Rhsim04G0146600 Rhododendron simsii HOM05D003571 ORTHO05D004193 1.2e-18 97.4 271 30.6
Sabra16G0096300 Salix brachista HOM05D003571 ORTHO05D004193 1.2e-18 97.4 225 33.8
CSS0031681 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 2.1e-18 96.7 271 29.5
CSS0040711 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 2.1e-18 96.7 271 29.5
Eucgr.K01247 Eucalyptus grandis HOM05D003571 ORTHO05D004193 2.8e-18 96.3 260 32.7
CANSAT80G1173 Cannabis sativa HOM05D003571 ORTHO05D004193 3.6e-18 95.9 271 29.9
ECA248G2435 Erigeron canadensis HOM05D003571 ORTHO05D004193 3.6e-18 95.9 240 32.9
Manes.09G063600 Manihot esculenta HOM05D003571 ORTHO05D004193 3.6e-18 95.9 271 29.5
CiPaw.09G174600 Carya illinoinensis HOM05D003571 ORTHO05D004193 6.2e-18 95.1 269 29.7
Manes.08G008200 Manihot esculenta HOM05D003571 ORTHO05D004193 8.1e-18 94.7 270 31.1
RcHm_v2.0_Chr3g0469791 Rosa chinensis HOM05D003571 ORTHO05D004193 1.4e-17 94.0 272 30.1
TAR636G0639 Trochodendron aralioides HOM05D003571 ORTHO05D004193 1.8e-17 93.6 269 28.6
TAR636G1534 Trochodendron aralioides HOM05D003571 ORTHO05D004193 1.8e-17 93.6 269 28.6
Sabra06G0100000 Salix brachista HOM05D003571 ORTHO05D004193 5.2e-17 92.0 270 29.3
Atru.chr8.1854 Acer truncatum HOM05D003571 ORTHO05D004193 6.9e-17 91.7 271 28.8
MSTRG.19160 Avicennia marina HOM05D003571 ORTHO05D004193 6.9e-17 91.7 261 29.1
CSS0014133 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 6.9e-17 91.7 275 29.8
TWI53G0828 Tripterygium wilfordii HOM05D003571 ORTHO05D004193 6.9e-17 91.7 273 30.4
CSS0046537 Camellia sinensis var. sinensis HOM05D003571 ORTHO05D004193 1.2e-16 90.9 275 29.5
Peaxi162Scf00123g00089 Petunia axillaris HOM05D003571 ORTHO05D004193 1.2e-16 90.9 266 29.3
Rhsim04G0146300 Rhododendron simsii HOM05D003571 ORTHO05D004193 1.2e-16 90.9 270 30.4
Nn2g13718 Nelumbo nucifera HOM05D003571 ORTHO05D004193 1.5e-16 90.5 272 29.8
Duzib106G0011 Durio zibethinus HOM05D003571 ORTHO05D004193 2.6e-16 89.7 264 28.8
Thecc.05G061900 Theobroma cacao HOM05D003571 ORTHO05D004193 2.6e-16 89.7 270 29.3
Sc02g0001770 Simmondsia chinensis HOM05D003571 ORTHO05D004193 3.4e-16 89.4 246 28.9
Aqoxy1G01208 Aquilegia oxysepala HOM05D003571 ORTHO05D004193 1.3e-15 87.4 265 27.9
Sopen09g002710 Solanum pennellii HOM05D003571 ORTHO05D004193 1.3e-15 87.4 269 29.4
ATR0048G031 Amborella trichopoda HOM05D003571 ORTHO05D004193 1.7e-15 87.0 265 29.8
AUR62022345 Chenopodium quinoa HOM05D003571 ORTHO05D004193 1.7e-15 87.0 274 28.8
Ciclev10010923m.g Citrus clementina HOM05D003571 ORTHO05D004193 2.9e-15 86.3 277 28.9
Rhsim05G0180200 Rhododendron simsii HOM05D003571 ORTHO05D004193 2.9e-15 86.3 272 30.5
Ah.05g168560 Amaranthus hybridus HOM05D003571 ORTHO05D004193 3.8e-15 85.9 275 28.7
MSTRG.5747 Avicennia marina HOM05D003571 ORTHO05D004193 3.8e-15 85.9 270 27.4
Nn2g11512 Nelumbo nucifera HOM05D003571 ORTHO05D004193 4.9e-15 85.5 270 27.0
FvH4_6g16040 Fragaria vesca HOM05D003571 ORTHO05D004193 6.4e-15 85.1 272 29.4
FAN14G4150 Fragaria x ananassa HOM05D003571 ORTHO05D004193 6.4e-15 85.1 272 29.4
AUR62034361 Chenopodium quinoa HOM05D003571 ORTHO05D004193 8.4e-15 84.7 274 27.7
PGR142G1072 Punica granatum HOM05D003571 ORTHO05D004193 8.4e-15 84.7 267 30.0
Gorai.009G416700 Gossypium raimondii HOM05D003571 ORTHO05D004193 1.1e-14 84.3 271 31.4
MBI07_g30986_MAGBIO Magnolia biondii HOM05D003571 ORTHO05D004193 1.4e-14 84.0 273 27.5
PSO063G1543 Papaver somniferum HOM05D003571 ORTHO05D004193 1.4e-14 84.0 268 27.6
Solyc09g007870.3 Solanum lycopersicum HOM05D003571 ORTHO05D004193 1.4e-14 84.0 269 27.9
FAN05G4723 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.9e-14 83.6 271 29.9
FAN09G2327 Fragaria x ananassa HOM05D003571 ORTHO05D004193 1.9e-14 83.6 272 29.4
Hund17522 Selenicereus undatus HOM05D003571 ORTHO05D004193 1.9e-14 83.6 274 28.5
PGSC0003DMG400021547 Solanum tuberosum HOM05D003571 ORTHO05D004193 1.9e-14 83.6 269 27.5
Gohir.A04G073500 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.4e-14 83.2 267 31.5
PSO339G3261 Papaver somniferum HOM05D003571 ORTHO05D004193 3.2e-14 82.8 268 27.6
Lj3C982T5 Lonicera japonica HOM05D003571 ORTHO05D004193 4.2e-14 82.4 261 30.3
Oeu005332.2 Olea europaea HOM05D003571 ORTHO05D004193 5.4e-14 82.0 226 32.7
EL10Ac1g01686 Beta vulgaris HOM05D003571 ORTHO05D004193 7.1e-14 81.6 274 27.4
COL.COLO4_26995 Corchorus olitorius HOM05D003571 ORTHO05D004193 7.1e-14 81.6 272 28.3
Gohir.D04G112300 Gossypium hirsutum HOM05D003571 ORTHO05D004193 7.1e-14 81.6 271 31.4
SGA_v2.0_scaffold126G33934 Striga asiatica HOM05D003571 ORTHO05D004193 7.1e-14 81.6 265 29.1
Gorai.006G166200 Gossypium raimondii HOM05D003571 ORTHO05D004193 9.3e-14 81.3 115 44.3
Thhalv10012456m.g Eutrema salsugineum HOM05D003571 ORTHO05D004193 1.6e-13 80.5 266 27.8
Lalb_Chr01g0018771 Lupinus albus HOM05D003571 ORTHO05D004193 1.6e-13 80.5 106 45.3
Sc20g0005320 Simmondsia chinensis HOM05D003571 ORTHO05D004193 1.6e-13 80.5 264 26.5
Gohir.D09G144900 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.1e-13 80.1 115 44.3
MD04G1096400 Malus domestica HOM05D003571 ORTHO05D004193 2.1e-13 80.1 269 27.9
Gohir.A09G149000 Gossypium hirsutum HOM05D003571 ORTHO05D004193 2.7e-13 79.7 79 57.0
Prupe.6G235600 Prunus persica HOM05D003571 ORTHO05D004193 2.7e-13 79.7 273 27.5
Lsat_1_v5_gn_1_53261 Lactuca sativa HOM05D003571 ORTHO05D004193 3.5e-13 79.3 229 30.6
FAN02G1851 Fragaria x ananassa HOM05D003571 ORTHO05D004193 6.0e-13 78.6 271 29.9
CAN.G363.21 Capsicum annuum HOM05D003571 ORTHO05D004193 1.0e-12 77.8 267 26.6
Gohir.A11G324380 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.3e-12 77.4 266 27.8
vmacro08767 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 1.3e-12 77.4 271 26.9
THA.LOC104816665 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 1.7e-12 77.0 268 28.7
Nitab4.5_0027568g0010 Nicotiana tabacum HOM05D003571 ORTHO05D004193 3.0e-12 76.3 269 29.0
SalBow3G3339 Salvia bowleyana HOM05D003571 ORTHO05D004193 3.9e-12 75.9 269 27.1
Lsat_1_v5_gn_2_106480 Lactuca sativa HOM05D003571 ORTHO05D004193 5.1e-12 75.5 230 30.4
SalBow3G2504 Salvia bowleyana HOM05D003571 ORTHO05D004193 5.1e-12 75.5 269 27.1
BcaNung06157 Brassica carinata HOM05D003571 ORTHO05D004193 6.6e-12 75.1 272 27.2
A10p32660 Brassica napus HOM05D003571 ORTHO05D004193 1.1e-11 74.3 273 27.8
BraA10t45303Z Brassica rapa HOM05D003571 ORTHO05D004193 1.1e-11 74.3 273 27.8
Cc00_g20760 Coffea canephora HOM05D003571 ORTHO05D004193 1.1e-11 74.3 264 27.7
Migut.J00540 Erythranthe guttata HOM05D003571 ORTHO05D004193 1.1e-11 74.3 269 26.4
Sp6g39460 Schrenkiella parvula HOM05D003571 ORTHO05D004193 1.1e-11 74.3 269 27.1
Gohir.D11G343600 Gossypium hirsutum HOM05D003571 ORTHO05D004193 1.5e-11 73.9 267 26.6
CiPaw.10G133100 Carya illinoinensis HOM05D003571 ORTHO05D004193 2.5e-11 73.2 79 50.6
Duzib093G0844 Durio zibethinus HOM05D003571 ORTHO05D004193 2.5e-11 73.2 270 27.0
Gorai.007G373800 Gossypium raimondii HOM05D003571 ORTHO05D004193 2.5e-11 73.2 267 28.1
C09p73500 Brassica napus HOM05D003571 ORTHO05D004193 3.3e-11 72.8 272 26.8
BolC9t60082H Brassica oleracea HOM05D003571 ORTHO05D004193 3.3e-11 72.8 272 26.8
THA.LOC104826906 Tarenaya hassleriana HOM05D003571 ORTHO05D004193 3.3e-11 72.8 263 28.5
ECA238G4675 Erigeron canadensis HOM05D003571 ORTHO05D004193 5.6e-11 72.0 225 27.1
TAR623G0708 Trochodendron aralioides HOM05D003571 ORTHO05D004193 7.3e-11 71.6 88 51.1
vmacro20027 Vaccinium macrocarpon HOM05D003571 ORTHO05D004193 9.6e-11 71.2 154 35.1
HanXRQChr11g0350181 Helianthus annuus HOM05D003571 ORTHO05D004193 2.1e-10 70.1 229 29.3
Lj2C113T5 Lonicera japonica HOM05D003571 ORTHO05D004193 2.8e-10 69.7 242 31.0
BcaC06g32048 Brassica carinata HOM05D003571 ORTHO05D004193 3.6e-10 69.3 273 26.0
AL6G12590 Arabidopsis lyrata HOM05D003571 ORTHO05D004193 6.2e-10 68.6 270 27.0
Carub.0006s0208 Capsella rubella HOM05D003571 ORTHO05D004193 6.2e-10 68.6 269 26.8
AT5G03280 Arabidopsis thaliana HOM05D003571 ORTHO05D004193 8.1e-10 68.2 269 26.8
Cpa.g.sc390.5 Carica papaya HOM05D003571 ORTHO05D004193 8.1e-10 68.2 79 49.4
MD12G1117400 Malus domestica HOM05D003571 ORTHO05D004193 6.9e-09 65.1 98 41.8
Haze_17181 Corylus avellana HOM05D000530 ORTHO05D003341 1.2e-08 64.3 79 50.6
SEGI_08907 Sequoiadendron giganteum HOM05D003571 ORTHO05D004193 2.0e-08 63.5 85 49.4
MSTRG.26704 Avicennia marina HOM05D003571 ORTHO05D004193 2.6e-08 63.2 134 35.1
CARHR210060 Cardamine hirsuta HOM05D003571 ORTHO05D004193 3.4e-08 62.8 273 26.0
HanXRQChr01g0027351 Helianthus annuus HOM05D003571 ORTHO05D004193 7.6e-08 61.6 240 29.2
Zm00001eb119690 Zea mays HOM05D003571 ORTHO05D004193 9.9e-08 61.2 120 38.3
Os07g0155600 Oryza sativa ssp. japonica HOM05D003571 ORTHO05D004193 1.3e-07 60.8 115 37.4
DCAR_009299 Daucus carota HOM05D003571 ORTHO05D004193 2.2e-07 60.1 65 50.8
Aa31LG1G21830 Aethionema arabicum HOM05D003571 ORTHO05D004193 6.4e-07 58.5 302 24.2
DCAR_020834 Daucus carota HOM05D003571 ORTHO05D004193 1.1e-06 57.8 80 43.8
HanXRQChr07g0195371 Helianthus annuus HOM05D003571 ORTHO05D004193 1.9e-06 57.0 222 25.2


User provided reference genes

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