Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 1.2e-103 379.8 192 100.0
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 1.1e-86 323.6 192 84.9
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 3.1e-86 322.0 190 83.7
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 9.0e-86 320.5 191 84.3
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 6.4e-84 314.3 192 80.7
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 2.1e-82 309.3 193 79.3
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 6.7e-81 304.3 190 78.4
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 1.5e-80 303.1 190 78.4
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 1.9e-80 302.8 189 77.2
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 9.6e-80 300.4 190 77.4
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 1.1e-78 297.0 190 77.4
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 9.0e-78 293.9 190 75.3
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 1.5e-77 293.1 192 74.5
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 1.5e-77 293.1 192 74.0
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 2.6e-77 292.4 188 75.5
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 2.6e-77 292.4 190 74.2
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 5.8e-77 291.2 189 72.5
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 5.8e-77 291.2 189 75.7
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 1.7e-76 289.7 189 74.1
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 2.2e-76 289.3 189 73.5
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 2.9e-76 288.9 188 74.5
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 4.9e-76 288.1 190 73.2
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 8.4e-76 287.3 191 74.9
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 1.9e-75 286.2 192 72.9
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.4e-75 285.8 190 73.7
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.4e-75 285.8 190 73.7
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 2.4e-75 285.8 190 72.1
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 2.4e-75 285.8 188 73.9
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 4.2e-75 285.0 188 74.5
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 5.5e-75 284.6 188 73.9
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 7.1e-75 284.3 192 71.4
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 1.2e-74 283.5 192 70.3
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 4.6e-74 281.6 191 76.4
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 6.0e-74 281.2 189 70.9
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 6.0e-74 281.2 189 70.9
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 6.0e-74 281.2 189 69.3
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.8e-73 279.6 190 70.0
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 1.8e-73 279.6 188 70.7
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 3.0e-73 278.9 188 70.7
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 3.0e-73 278.9 192 71.4
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 3.0e-73 278.9 190 69.5
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 8.7e-73 277.3 189 72.0
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 8.7e-73 277.3 188 72.9
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.5e-72 276.6 188 72.3
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 2.5e-72 275.8 190 70.0
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 3.3e-72 275.4 190 69.5
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 4.3e-72 275.0 188 69.7
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 5.6e-72 274.6 189 69.8
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 1.3e-71 273.5 184 74.5
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 2.8e-71 272.3 192 68.8
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 3.7e-71 271.9 189 68.8
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 6.2e-71 271.2 203 67.0
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 1.1e-70 270.4 190 72.1
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.4e-70 270.0 183 71.0
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 1.4e-70 270.0 156 86.5
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 1.8e-70 269.6 188 72.9
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 2.4e-70 269.2 190 66.8
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 2.4e-70 269.2 190 67.9
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 9.0e-70 267.3 208 65.9
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.5e-69 266.5 183 70.5
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.5e-69 266.5 188 71.8
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 4.5e-69 265.0 192 66.1
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 5.8e-69 264.6 190 66.3
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 7.6e-69 264.2 192 67.7
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 1.3e-68 263.5 190 68.4
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.7e-68 263.1 179 72.1
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 2.2e-68 262.7 188 69.7
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 2.2e-68 262.7 190 66.3
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 2.9e-68 262.3 189 70.4
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 3.8e-68 261.9 188 68.1
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 4.9e-68 261.5 192 68.2
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 4.9e-68 261.5 190 65.8
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 7.1e-67 257.7 190 66.3
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 2.7e-66 255.8 196 64.8
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 2.7e-66 255.8 189 67.7
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 6.0e-66 254.6 189 63.0
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 7.9e-66 254.2 204 64.7
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 3.0e-65 252.3 192 64.1
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 3.9e-65 251.9 190 62.1
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 3.9e-65 251.9 198 64.1
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 5.1e-65 251.5 188 64.4
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 1.9e-64 249.6 181 69.1
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 1.9e-64 249.6 188 65.4
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 2.5e-64 249.2 182 67.6
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 7.4e-64 247.7 188 66.5
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 2.8e-63 245.7 218 57.8
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 8.2e-63 244.2 214 58.4
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 1.1e-62 243.8 166 73.5
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 1.8e-62 243.0 164 72.6
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 2.4e-62 242.7 188 60.1
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 4.1e-62 241.9 187 63.6
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 4.5e-61 238.4 190 60.5
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 1.7e-60 236.5 186 64.5
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 5.0e-60 235.0 189 60.3
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 5.5e-59 231.5 179 62.6
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 6.1e-58 228.0 164 69.5
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 1.4e-57 226.9 187 64.2
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 4.8e-55 218.4 190 62.1
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 1.5e-53 213.4 201 57.2
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 4.5e-53 211.8 190 54.7
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 1.4e-49 200.3 133 73.7
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 4.8e-47 191.8 124 73.4
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 8.2e-47 191.0 124 73.4
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 1.4e-46 190.3 173 53.2
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 7.0e-46 188.0 204 53.4
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 2.0e-45 186.4 134 70.9
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 8.5e-44 181.0 184 51.1
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 1.4e-43 180.3 128 70.3
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 2.3e-41 172.9 187 49.7
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 4.8e-39 165.2 193 44.0
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.7e-36 156.8 123 64.2
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 5.9e-29 131.7 169 49.1
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 2.2e-28 129.8 172 47.1
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 3.8e-28 129.0 84 75.0
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 4.2e-27 125.6 81 72.8
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 2.1e-26 123.2 85 68.2
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 4.7e-26 122.1 176 35.2
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 6.8e-25 118.2 83 68.7
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 3.7e-23 112.5 79 72.2
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 1.1e-19 100.9 129 39.5
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 1.9e-19 100.1 178 36.5
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 1.4e-14 84.0 43 88.4
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 1.8e-14 83.6 57 71.9
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 1.2e-13 80.9 139 43.9
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 7.8e-13 78.2 44 81.8
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 8.9e-09 64.7 41 78.0


User provided reference genes

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