Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0036s0010 Medicago truncatula HOM05D000320 ORTHO05D000532 9.5e-39 162.9 76 100.0
TPR.G33818 Trifolium pratense HOM05D000320 ORTHO05D000532 5.0e-32 140.6 76 84.2
Ca_03585_v3 Cicer arietinum L. HOM05D000320 ORTHO05D000532 1.6e-30 135.6 76 84.2
Psat1g013880 Pisum sativum HOM05D000320 ORTHO05D000532 1.8e-29 132.1 76 77.6
Lj3g0011138 Lotus japonicus HOM05D000320 ORTHO05D000532 2.3e-29 131.7 76 77.6
arahy.Tifrunner.gnm1.ann1.8SJW9U Arachis hypogaea HOM05D000320 ORTHO05D000532 3.5e-25 117.9 76 72.4
Glyma.08G165900 Glycine max HOM05D000320 ORTHO05D000532 1.3e-24 115.9 77 72.7
arahy.Tifrunner.gnm1.ann1.CE4N6Q Arachis hypogaea HOM05D000320 ORTHO05D000532 1.7e-24 115.5 76 71.1
Glyma.15G261100 Glycine max HOM05D000320 ORTHO05D000532 1.1e-23 112.8 77 71.4
Ca_27433_v3 Cicer arietinum L. HOM05D000320 ORTHO05D000532 5.6e-23 110.5 77 68.8
Lalb_Chr25g0284561 Lupinus albus HOM05D000320 ORTHO05D000532 2.8e-22 108.2 71 69.0
Phvul.011G176800 Phaseolus vulgaris HOM05D000320 ORTHO05D000532 2.8e-22 108.2 79 67.1
Glyma.15G213400 Glycine max HOM05D000320 ORTHO05D000532 3.6e-22 107.8 74 68.9
Lalb_Chr01g0015481 Lupinus albus HOM05D000320 ORTHO05D000532 6.2e-22 107.1 77 64.9
Lj3g0003278 Lotus japonicus HOM05D000320 ORTHO05D000532 1.1e-21 106.3 77 66.2
Glyma.08G237150 Glycine max HOM05D000320 ORTHO05D000532 4.0e-21 104.4 79 65.8
Lalb_Chr19g0133231 Lupinus albus HOM05D000320 ORTHO05D000532 1.3e-19 99.4 77 66.2
Phvul.005G050200 Phaseolus vulgaris HOM05D000320 ORTHO05D000532 1.3e-19 99.4 69 66.7
TPR.G9395 Trifolium pratense HOM05D000320 ORTHO05D000532 2.9e-19 98.2 77 66.2
arahy.Tifrunner.gnm1.ann1.M6CJ98 Arachis hypogaea HOM05D000320 ORTHO05D000532 3.7e-19 97.8 76 59.2
arahy.Tifrunner.gnm1.ann1.S6GYJN Arachis hypogaea HOM05D000320 ORTHO05D000532 4.9e-19 97.4 76 59.2
VMungo1080G0480 Vigna mungo HOM05D000320 ORTHO05D000532 4.9e-19 97.4 69 66.7
Lalb_Chr19g0133221 Lupinus albus HOM05D000320 ORTHO05D000532 1.4e-18 95.9 78 59.0
Lj3g0026280 Lotus japonicus HOM05D000320 ORTHO05D000532 3.2e-18 94.7 76 57.9
Lalb_Chr20g0108511 Lupinus albus HOM05D000320 ORTHO05D000532 3.9e-16 87.8 77 57.1
Cfa019407 Carpinus fangiana HOM05D000320 ORTHO05D000532 8.6e-16 86.7 77 59.7
Glyma.08G165800 Glycine max HOM05D000320 ORTHO05D000532 8.6e-16 86.7 78 56.4
Ca_03584_v3 Cicer arietinum L. HOM05D000320 ORTHO05D000532 2.5e-15 85.1 80 55.0
CiPaw.11G061500 Carya illinoinensis HOM05D000320 ORTHO05D000532 3.3e-15 84.7 77 58.4
TPR.G33847 Trifolium pratense HOM05D000320 ORTHO05D000532 5.6e-15 84.0 79 53.2
Glyma.15G261200 Glycine max HOM05D000320 ORTHO05D000532 9.5e-15 83.2 78 53.8
Psat1g011960 Pisum sativum HOM05D000320 ORTHO05D000532 2.8e-14 81.6 81 53.1
Cpa.g.sc34.26 Carica papaya HOM05D000320 ORTHO05D000532 4.7e-14 80.9 72 54.2
Phvul.005G050300 Phaseolus vulgaris HOM05D000320 ORTHO05D000532 4.7e-14 80.9 78 53.8
Psat4g169760 Pisum sativum HOM05D000320 ORTHO05D000532 4.7e-14 80.9 75 54.7
Medtr8g442400 Medicago truncatula HOM05D000320 ORTHO05D000532 6.2e-14 80.5 80 55.0
FAN16G3402 Fragaria x ananassa HOM05D000320 ORTHO05D000532 8.1e-14 80.1 78 55.1
COL.COLO4_19757 Corchorus olitorius HOM05D000320 ORTHO05D000532 1.1e-13 79.7 72 56.9
Dinv42473 Davidia involucrata HOM05D000320 ORTHO05D000532 1.4e-13 79.3 77 55.8
FvH4_3g14670 Fragaria vesca HOM05D000320 ORTHO05D000532 1.8e-13 79.0 78 53.8
FAN21G1482 Fragaria x ananassa HOM05D000320 ORTHO05D000532 1.8e-13 79.0 78 53.8
FAN11G3815 Fragaria x ananassa HOM05D000320 ORTHO05D000532 2.4e-13 78.6 78 53.8
FAN25G0677 Fragaria x ananassa HOM05D000320 ORTHO05D000532 5.2e-13 77.4 78 52.6
FAN25G1005 Fragaria x ananassa HOM05D000320 ORTHO05D000532 5.2e-13 77.4 78 52.6
Prupe.4G132000 Prunus persica HOM05D000320 ORTHO05D000532 8.9e-13 76.6 79 50.6
RcHm_v2.0_Chr5g0024161 Rosa chinensis HOM05D000320 ORTHO05D000532 1.2e-12 76.3 76 52.6
Atru.chr1.90 Acer truncatum HOM05D000320 ORTHO05D000532 2.6e-12 75.1 78 52.6
Rhsim06G0242800 Rhododendron simsii HOM05D000320 ORTHO05D000532 5.8e-12 73.9 78 50.0
Ciclev10004181m.g Citrus clementina HOM05D000320 ORTHO05D000532 7.6e-12 73.6 78 57.7
Thecc.07G183000 Theobroma cacao HOM05D000320 ORTHO05D000532 9.9e-12 73.2 63 60.3
Lj1A846T65 Lonicera japonica HOM05D000320 ORTHO05D000532 1.3e-11 72.8 69 55.1
Potri.007G069500 Populus trichocarpa HOM05D000320 ORTHO05D000532 1.3e-11 72.8 79 55.7
vmacro11693 Vaccinium macrocarpon HOM05D000320 ORTHO05D000532 1.3e-11 72.8 67 56.7
EL10Ac2g03293 Beta vulgaris HOM05D000320 ORTHO05D000532 1.7e-11 72.4 72 54.2
AUR62038349 Chenopodium quinoa HOM05D000320 ORTHO05D000532 2.2e-11 72.0 72 52.8
AUR62041493 Chenopodium quinoa HOM05D000320 ORTHO05D000532 2.2e-11 72.0 72 52.8
MD10G1208700 Malus domestica HOM05D000320 ORTHO05D000532 2.2e-11 72.0 78 50.0
Potri.005G095200 Populus trichocarpa HOM05D000320 ORTHO05D000532 2.9e-11 71.6 79 54.4
MD05G1229400 Malus domestica HOM05D000320 ORTHO05D000532 3.8e-11 71.2 78 50.0
Duzib268G0603 Durio zibethinus HOM05D000320 ORTHO05D000532 6.4e-11 70.5 72 52.8
Gohir.A01G099800 Gossypium hirsutum HOM05D000320 ORTHO05D000532 6.4e-11 70.5 72 51.4
Gohir.D01G084300 Gossypium hirsutum HOM05D000320 ORTHO05D000532 6.4e-11 70.5 72 51.4
Gorai.002G110000 Gossypium raimondii HOM05D000320 ORTHO05D000532 6.4e-11 70.5 72 51.4
Lj8C157T3 Lonicera japonica HOM05D000320 ORTHO05D000532 6.4e-11 70.5 72 55.6
Manes.14G010100 Manihot esculenta HOM05D000320 ORTHO05D000532 8.4e-11 70.1 71 53.5
CsaV3_6G013530 Cucumis sativus L. HOM05D000320 ORTHO05D000532 1.1e-10 69.7 71 56.3
Manes.06G176000 Manihot esculenta HOM05D000320 ORTHO05D000532 1.4e-10 69.3 67 53.7
Sed0019104 Sechium edule HOM05D000320 ORTHO05D000532 1.4e-10 69.3 64 60.9
Cpa.g.sc34.25 Carica papaya HOM05D000320 ORTHO05D000532 1.9e-10 68.9 70 55.7
Actinidia24663 Actinidia chinensis HOM05D000320 ORTHO05D000532 2.4e-10 68.6 77 50.6
Sabra05G0078600 Salix brachista HOM05D000320 ORTHO05D000532 2.4e-10 68.6 79 51.9
TWI38G1349 Tripterygium wilfordii HOM05D000320 ORTHO05D000532 4.1e-10 67.8 67 50.7
Sed0021139 Sechium edule HOM05D000320 ORTHO05D000532 5.4e-10 67.4 67 52.2
MELO3C019637.2 Cucumis melo HOM05D000320 ORTHO05D000532 9.2e-10 66.6 71 53.5
Hund12021 Selenicereus undatus HOM05D000320 ORTHO05D000532 9.2e-10 66.6 75 50.7
MBI18_g05695_MAGBIO Magnolia biondii HOM05D000320 ORTHO05D000532 1.6e-09 65.9 70 51.4
Manes.06G175900 Manihot esculenta HOM05D000320 ORTHO05D000532 1.6e-09 65.9 72 52.8
SGA_v2.0_scaffold7G03615 Striga asiatica HOM05D000320 ORTHO05D000532 1.6e-09 65.9 70 50.0
TAR629G1940 Trochodendron aralioides HOM05D000320 ORTHO05D000532 2.1e-09 65.5 79 48.1
GSVIVG01036758001 Vitis vinifera HOM05D000320 ORTHO05D000532 2.7e-09 65.1 76 47.4
ClCG02G018640 Citrullus lanatus HOM05D000320 ORTHO05D000532 4.6e-09 64.3 74 55.4
Oeu034983.1 Olea europaea HOM05D000320 ORTHO05D000532 4.6e-09 64.3 66 51.5
Sabra03G0076200 Salix brachista HOM05D000320 ORTHO05D000532 6.0e-09 63.9 79 49.4
THA.LOC104808132 Tarenaya hassleriana HOM05D000320 ORTHO05D000532 6.0e-09 63.9 76 46.1
CSS0028058 Camellia sinensis var. sinensis HOM05D000320 ORTHO05D000532 2.3e-08 62.0 70 51.4
CSS0049296 Camellia sinensis var. sinensis HOM05D000320 ORTHO05D000532 2.3e-08 62.0 70 51.4
TAR627G0806 Trochodendron aralioides HOM05D000320 ORTHO05D000532 2.3e-08 62.0 79 46.8
Sabra07G0057000 Salix brachista HOM05D000320 ORTHO05D000532 3.0e-08 61.6 70 54.3
Sabra01G0095300 Salix brachista HOM05D000320 ORTHO05D000532 3.9e-08 61.2 79 48.1
Potri.001G123500 Populus trichocarpa HOM05D000320 ORTHO05D000532 5.1e-08 60.8 79 48.1
Thhalv10018023m.g Eutrema salsugineum HOM05D000320 ORTHO05D000532 6.6e-08 60.5 73 50.7
PGSC0003DMG401022117 Solanum tuberosum HOM05D000320 ORTHO05D000532 8.7e-08 60.1 70 47.1
CANSAT80G0979 Cannabis sativa HOM05D000320 ORTHO05D000532 1.1e-07 59.7 69 52.2
SGA_v2.0_scaffold49G18195 Striga asiatica HOM05D000320 ORTHO05D001506 1.1e-07 59.7 63 52.4
TWI63G1416 Tripterygium wilfordii HOM05D000320 ORTHO05D000532 1.1e-07 59.7 64 50.0
Ah.16g106110 Amaranthus hybridus HOM05D000320 ORTHO05D000532 1.5e-07 59.3 62 53.2
Eucgr.F01473 Eucalyptus grandis HOM05D000320 ORTHO05D000532 1.5e-07 59.3 49 61.2
Sc09g0007800 Simmondsia chinensis HOM05D000320 ORTHO05D000532 1.5e-07 59.3 70 50.0
AL2G40210 Arabidopsis lyrata HOM05D000320 ORTHO05D000532 1.9e-07 58.9 58 51.7
C06p29800 Brassica napus HOM05D000320 ORTHO05D000532 1.9e-07 58.9 56 55.4
BolC6t38141H Brassica oleracea HOM05D000320 ORTHO05D000532 1.9e-07 58.9 56 55.4
Duzib052G0109 Durio zibethinus HOM05D000320 ORTHO05D000532 1.9e-07 58.9 76 48.7
Migut.H01665 Erythranthe guttata HOM05D000320 ORTHO05D000532 1.9e-07 58.9 50 56.0
Nitab4.5_0006109g0010 Nicotiana tabacum HOM05D000320 ORTHO05D000532 1.9e-07 58.9 73 46.6
Oeu019721.1 Olea europaea HOM05D000320 ORTHO05D000532 1.9e-07 58.9 66 47.0
BcaB02g07226 Brassica carinata HOM05D000320 ORTHO05D000532 3.3e-07 58.2 60 51.7
BraA07t30350Z Brassica rapa HOM05D000320 ORTHO05D000532 3.3e-07 58.2 57 52.6
Nitab4.5_0000029g0240 Nicotiana tabacum HOM05D000320 ORTHO05D000532 3.3e-07 58.2 73 46.6
Potri.003G110000 Populus trichocarpa HOM05D000320 ORTHO05D000532 3.3e-07 58.2 79 45.6
SGA_v2.0_scaffold239G44018 Striga asiatica HOM05D000320 ORTHO05D000532 3.3e-07 58.2 69 47.8
Hma1.2p1_0334F.1_g128500 Hydrangea macrophylla HOM05D000320 ORTHO05D000532 4.3e-07 57.8 75 48.0
TWI38G1777 Tripterygium wilfordii HOM05D000320 ORTHO05D000532 4.3e-07 57.8 60 51.7
Aa31LG7G800 Aethionema arabicum HOM05D000320 ORTHO05D000532 5.6e-07 57.4 76 43.4
HanXRQChr04g0125321 Helianthus annuus HOM05D000320 ORTHO05D000532 5.6e-07 57.4 76 43.4
A09p60960 Brassica napus HOM05D000320 ORTHO05D000532 7.3e-07 57.0 54 55.6
BraA09t41469Z Brassica rapa HOM05D000320 ORTHO05D000532 7.3e-07 57.0 54 55.6
COL.COLO4_17643 Corchorus olitorius HOM05D000320 ORTHO05D000532 7.3e-07 57.0 76 46.1
THA.LOC104812369 Tarenaya hassleriana HOM05D000320 ORTHO05D000532 9.6e-07 56.6 77 40.3
SalBow8G4041 Salvia bowleyana HOM05D000320 ORTHO05D000532 1.2e-06 56.2 44 63.6
A07p27060 Brassica napus HOM05D000320 ORTHO05D000532 1.6e-06 55.8 60 48.3
C08p44540 Brassica napus HOM05D000320 ORTHO05D000532 1.6e-06 55.8 54 55.6
Aa31LG4G1420 Aethionema arabicum HOM05D000320 ORTHO05D000532 2.1e-06 55.5 54 55.6
AT1G79570 Arabidopsis thaliana HOM05D000320 ORTHO05D000532 2.1e-06 55.5 79 46.8
BolC8t52000H Brassica oleracea HOM05D000320 ORTHO05D000532 2.1e-06 55.5 32 81.2
Manes.14G010000 Manihot esculenta HOM05D000320 ORTHO05D000532 2.1e-06 55.5 70 45.7
Sp1g14470 Schrenkiella parvula HOM05D000320 ORTHO05D000532 2.1e-06 55.5 54 51.9
THA.LOC104798557 Tarenaya hassleriana HOM05D000320 ORTHO05D000532 2.1e-06 55.5 59 52.5
Thecc.02G006800 Theobroma cacao HOM05D000320 ORTHO05D000532 2.8e-06 55.1 76 46.1
MBI02_g26997_MAGBIO Magnolia biondii HOM05D000320 ORTHO05D000532 3.6e-06 54.7 63 46.0
Gohir.A12G047900 Gossypium hirsutum HOM05D000320 ORTHO05D000532 4.7e-06 54.3 76 43.4
Gohir.D12G046700 Gossypium hirsutum HOM05D000320 ORTHO05D000532 4.7e-06 54.3 76 43.4
Carub.0002s2643 Capsella rubella HOM05D000320 ORTHO05D000532 6.2e-06 53.9 77 41.6
Sp5g34630 Schrenkiella parvula HOM05D000320 ORTHO05D000532 6.2e-06 53.9 58 48.3
CARHR073230 Cardamine hirsuta HOM05D000320 ORTHO05D000532 8.1e-06 53.5 77 41.6
Sp4g17320 Schrenkiella parvula HOM05D000320 ORTHO05D000532 8.1e-06 53.5 67 50.7


User provided reference genes

Program Settings