Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0024s0060 Medicago truncatula HOM05D007149 ORTHO05D008956 1.8e-75 285.8 145 100.0
Ca_13737_v3 Cicer arietinum L. HOM05D007149 ORTHO05D008956 2.9e-36 155.6 84 90.5
Nn4g23775 Nelumbo nucifera HOM05D007149 ORTHO05D008956 1.9e-35 152.9 84 85.7
Glyma.19G046200 Glycine max HOM05D007149 ORTHO05D008956 3.2e-35 152.1 85 85.9
Psat1g079040 Pisum sativum HOM05D007149 ORTHO05D008956 7.1e-35 151.0 84 86.9
Ah.10g037580 Amaranthus hybridus HOM05D007149 ORTHO05D008956 9.3e-35 150.6 84 88.1
Lalb_Chr04g0257361 Lupinus albus HOM05D007149 ORTHO05D008956 1.6e-34 149.8 85 83.5
Cc07_g08920 Coffea canephora HOM05D007149 ORTHO05D008956 3.5e-34 148.7 84 85.7
Migut.H00206 Erythranthe guttata HOM05D007149 ORTHO05D008956 4.6e-34 148.3 84 84.5
Manes.01G108800 Manihot esculenta HOM05D007149 ORTHO05D008956 4.6e-34 148.3 84 85.7
Cfa007939 Carpinus fangiana HOM05D007149 ORTHO05D008956 6.0e-34 147.9 84 83.3
Solyc02g063085.1 Solanum lycopersicum HOM05D007149 ORTHO05D008956 7.9e-34 147.5 84 85.7
Thecc.04G136400 Theobroma cacao HOM05D007149 ORTHO05D008956 7.9e-34 147.5 84 81.0
Actinidia15873 Actinidia chinensis HOM05D007149 ORTHO05D008956 1.0e-33 147.1 84 84.5
Eucgr.J01478 Eucalyptus grandis HOM05D007149 ORTHO05D008956 1.0e-33 147.1 84 83.3
Lsat_1_v5_gn_3_78860 Lactuca sativa HOM05D007149 ORTHO05D008956 1.0e-33 147.1 84 82.1
Phvul.004G064400 Phaseolus vulgaris HOM05D007149 ORTHO05D008956 1.0e-33 147.1 84 85.7
PSO782G5258 Papaver somniferum HOM05D007149 ORTHO05D008956 1.3e-33 146.7 84 84.5
Aa31LG11G13550 Aethionema arabicum HOM05D007149 ORTHO05D008956 1.8e-33 146.4 86 80.2
Dinv34841 Davidia involucrata HOM05D007149 ORTHO05D008956 1.8e-33 146.4 84 84.5
Gohir.A07G071500 Gossypium hirsutum HOM05D007149 ORTHO05D008956 1.8e-33 146.4 84 83.3
Gohir.D07G076000 Gossypium hirsutum HOM05D007149 ORTHO05D008956 1.8e-33 146.4 84 83.3
Gorai.001G080200 Gossypium raimondii HOM05D007149 ORTHO05D008956 1.8e-33 146.4 84 83.3
Hma1.2p1_0550F.1_g177300 Hydrangea macrophylla HOM05D007149 ORTHO05D008956 1.8e-33 146.4 84 84.5
QL02p051591 Quercus lobata HOM05D007149 ORTHO05D008956 1.8e-33 146.4 84 82.1
Sp6g28070 Schrenkiella parvula HOM05D007149 ORTHO05D008956 1.8e-33 146.4 86 80.2
COL.COLO4_16183 Corchorus olitorius HOM05D007149 ORTHO05D008956 2.3e-33 146.0 84 81.0
Lj2g0020616 Lotus japonicus HOM05D007149 ORTHO05D008956 2.3e-33 146.0 85 84.7
Aqoxy3G03934 Aquilegia oxysepala HOM05D007149 ORTHO05D008956 3.0e-33 145.6 84 83.3
Ciclev10013207m.g Citrus clementina HOM05D007149 ORTHO05D008956 3.0e-33 145.6 84 82.1
Peaxi162Scf00501g00121 Petunia axillaris HOM05D007149 ORTHO05D008956 3.0e-33 145.6 84 84.5
THA.LOC104803005 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 3.0e-33 145.6 84 81.0
CSS0003707 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 3.9e-33 145.2 83 84.3
Cpa.g.sc179.16 Carica papaya HOM05D007149 ORTHO05D008956 3.9e-33 145.2 84 82.1
Os03g0257900 Oryza sativa ssp. japonica HOM05D007149 ORTHO05D008956 3.9e-33 145.2 84 83.3
Actinidia36312 Actinidia chinensis HOM05D007149 ORTHO05D008956 5.1e-33 144.8 83 84.3
DCAR_017207 Daucus carota HOM05D007149 ORTHO05D008956 5.1e-33 144.8 84 82.1
vmacro05569 Vaccinium macrocarpon HOM05D007149 ORTHO05D008956 5.1e-33 144.8 84 84.5
HPP92_011090 Vanilla planifolia HOM05D007149 ORTHO05D008956 5.1e-33 144.8 84 82.1
CiPaw.03G060400 Carya illinoinensis HOM05D007149 ORTHO05D008956 6.7e-33 144.4 84 81.0
CiPaw.04G040600 Carya illinoinensis HOM05D007149 ORTHO05D008956 6.7e-33 144.4 84 82.1
Sabra17G0093700 Salix brachista HOM05D007149 ORTHO05D008956 8.7e-33 144.1 84 82.1
Hund13727 Selenicereus undatus HOM05D007149 ORTHO05D008956 8.7e-33 144.1 84 81.0
CSS0003918 Camellia sinensis var. sinensis HOM05D007149 ORTHO05D008956 1.5e-32 143.3 83 83.1
CANSAT64G1005 Cannabis sativa HOM05D007149 ORTHO05D008956 1.5e-32 143.3 84 82.1
ATR0665G039 Amborella trichopoda HOM05D007149 ORTHO05D008956 1.9e-32 142.9 84 85.7
Sc11g0008240 Simmondsia chinensis HOM05D007149 ORTHO05D008956 2.5e-32 142.5 85 80.0
THA.LOC104827153 Tarenaya hassleriana HOM05D007149 ORTHO05D008956 2.5e-32 142.5 84 78.6
TWI74G0718 Tripterygium wilfordii HOM05D007149 ORTHO05D008956 2.5e-32 142.5 84 82.1
Zm00001eb011230 Zea mays HOM05D007149 ORTHO05D008956 2.5e-32 142.5 84 79.8
Thhalv10015129m.g Eutrema salsugineum HOM05D007149 ORTHO05D008956 3.3e-32 142.1 86 77.9
CAN.G953.15 Capsicum annuum HOM05D007149 ORTHO05D008956 4.3e-32 141.7 84 81.0
PGR004G0481 Punica granatum HOM05D007149 ORTHO05D008956 4.3e-32 141.7 80 82.5
BcaB08g36883 Brassica carinata HOM05D007149 ORTHO05D008956 5.6e-32 141.4 85 77.6
BcaC04g18912 Brassica carinata HOM05D007149 ORTHO05D008956 5.6e-32 141.4 86 76.7
A10p23000 Brassica napus HOM05D007149 ORTHO05D008956 5.6e-32 141.4 86 76.7
C09p60970 Brassica napus HOM05D007149 ORTHO05D008956 5.6e-32 141.4 86 76.7
BolC9t58944H Brassica oleracea HOM05D007149 ORTHO05D008956 5.6e-32 141.4 86 76.7
BraA10t44369Z Brassica rapa HOM05D007149 ORTHO05D008956 5.6e-32 141.4 86 76.7
Potri.017G113401 Populus trichocarpa HOM05D007149 ORTHO05D008956 5.6e-32 141.4 84 81.0
AL6G26940 Arabidopsis lyrata HOM05D007149 ORTHO05D008956 7.4e-32 141.0 86 76.7
CARHR197250 Cardamine hirsuta HOM05D007149 ORTHO05D008956 7.4e-32 141.0 86 76.7
PSO063G3907 Papaver somniferum HOM05D007149 ORTHO05D008956 9.6e-32 140.6 84 81.0
EL10Ac2g04594 Beta vulgaris HOM05D007149 ORTHO05D008956 1.3e-31 140.2 84 82.1
FvH4_6g45250 Fragaria vesca HOM05D007149 ORTHO05D008956 1.6e-31 139.8 84 79.8
FAN09G4869 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.6e-31 139.8 84 79.8
FAN14G5255 Fragaria x ananassa HOM05D007149 ORTHO05D008956 1.6e-31 139.8 84 79.8
HanXRQChr12g0376461 Helianthus annuus HOM05D007149 ORTHO05D008956 1.6e-31 139.8 83 79.5
RcHm_v2.0_Chr2g0162971 Rosa chinensis HOM05D007149 ORTHO05D008956 1.6e-31 139.8 84 79.8
Atru.chr8.867 Acer truncatum HOM05D007149 ORTHO05D008956 2.1e-31 139.4 80 82.5
Carub.0006s1425 Capsella rubella HOM05D007149 ORTHO05D008956 2.8e-31 139.0 86 75.6
CDE11G0018 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 4.8e-31 138.3 83 79.5
CsaV3_5G039180 Cucumis sativus L. HOM05D007149 ORTHO05D008956 6.2e-31 137.9 84 79.8
MELO3C022093.2 Cucumis melo HOM05D007149 ORTHO05D008956 1.1e-30 137.1 83 79.5
unitig_899.g14509 Utricularia gibba HOM05D007149 ORTHO05D008956 1.1e-30 137.1 82 80.5
AT5G16060 Arabidopsis thaliana HOM05D007149 ORTHO05D008956 1.8e-30 136.3 86 73.3
Sed0025185 Sechium edule HOM05D007149 ORTHO05D008956 3.1e-30 135.6 84 76.2
MD07G1095900 Malus domestica HOM05D007149 ORTHO05D008956 9.0e-30 134.0 84 78.6
MD17G1105000 Malus domestica HOM05D007149 ORTHO05D008956 9.0e-30 134.0 84 78.6
FAN09G3419 Fragaria x ananassa HOM05D007149 ORTHO05D008956 5.8e-29 131.3 95 70.5
GSVIVG01031069001 Vitis vinifera HOM05D007149 ORTHO05D008956 9.9e-29 130.6 84 72.6
Duzib133G0440 Durio zibethinus HOM05D007149 ORTHO05D008956 6.4e-28 127.9 122 55.7
TPR.G32450 Trifolium pratense HOM05D007149 ORTHO05D008956 1.1e-27 127.1 134 54.5
FAN02G3200 Fragaria x ananassa HOM05D007149 ORTHO05D008956 2.4e-27 125.9 96 66.7
Haze_14138 Corylus avellana HOM05D007149 ORTHO05D008956 9.3e-27 124.0 68 85.3
Nn3g17784 Nelumbo nucifera HOM05D007149 ORTHO05D008956 9.3e-27 124.0 69 82.6
SalBow3G3356 Salvia bowleyana HOM05D007149 ORTHO05D008956 5.1e-25 118.2 67 83.6
HPP92_011107 Vanilla planifolia HOM05D007149 ORTHO05D008956 5.1e-25 118.2 70 78.6
PGSC0003DMG400024179 Solanum tuberosum HOM05D007149 ORTHO05D008956 8.7e-25 117.5 69 81.2
arahy.Tifrunner.gnm1.ann1.2T9F1Z Arachis hypogaea HOM05D007149 ORTHO05D008956 2.5e-24 115.9 74 74.3
arahy.Tifrunner.gnm1.ann1.HVR4ZG Arachis hypogaea HOM05D007149 ORTHO05D008956 2.5e-24 115.9 74 74.3
Aa31LG2G17140 Aethionema arabicum HOM05D007149 ORTHO05D008956 9.6e-24 114.0 67 79.1
Nitab4.5_0001569g0020 Nicotiana tabacum HOM05D007149 ORTHO05D008956 9.6e-24 114.0 66 80.3
CDE05G2183 Ceratophyllum demersum HOM05D007149 ORTHO05D008956 1.6e-23 113.2 65 84.6
ClCG11G005400 Citrullus lanatus HOM05D007149 ORTHO05D008956 2.1e-23 112.8 65 84.6
Carub.0055s0008 Capsella rubella HOM05D007149 ORTHO05D008956 4.8e-23 111.7 68 76.5
SHI30170 Sapria himalayana HOM05D007149 ORTHO05D008956 4.0e-22 108.6 66 75.8
ECA246G4376 Erigeron canadensis HOM05D007149 ORTHO05D008956 5.3e-22 108.2 62 77.4
Sopen02g014160 Solanum pennellii HOM05D007149 ORTHO05D008956 5.3e-22 108.2 62 82.3
AagrBONN_evm.TU.Sc2ySwM_228.1220 Anthoceros agrestis HOM05D007149 ORTHO05D008956 1.5e-21 106.7 80 61.2
SalBow6G3599 Salvia bowleyana HOM05D007149 ORTHO05D008956 3.4e-21 105.5 62 79.0
AUR62014527 Chenopodium quinoa HOM05D007149 ORTHO05D008956 4.5e-21 105.1 62 75.8
Pp3c20_17910 Physcomitrium patens HOM05D007149 ORTHO05D008956 1.1e-19 100.5 80 58.8
Prupe.3G238900 Prunus persica HOM05D007149 ORTHO05D008956 2.7e-18 95.9 62 71.0
SMO356G0237 Selaginella moellendorffii HOM05D007149 ORTHO05D008956 4.6e-18 95.1 78 60.3
Mapoly0073s0075 Marchantia polymorpha HOM05D007149 ORTHO05D008956 1.1e-14 84.0 58 65.5
RcHm_v2.0_Chr2g0163021 Rosa chinensis HOM05D007149 ORTHO05D008956 9.0e-14 80.9 66 65.2
SGA_v2.0_scaffold33G13472 Striga asiatica HOM05D007149 ORTHO05D008956 4.5e-13 78.6 45 75.6
Nitab4.5_0002288g0070 Nicotiana tabacum HOM05D007149 ORTHO05D008956 1.4e-11 73.6 84 52.4
PRCOL_00003753 Prasinoderma coloniale HOM05D007149 ORTHO05D008956 4.2e-11 72.0 75 48.0
MCO15G246 Micromonas commoda HOM05D007149 ORTHO05D008956 1.6e-10 70.1 70 47.1


User provided reference genes

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