Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0022s0450 Medicago truncatula HOM05D001235 ORTHO05D001610 1.9e-50 202.2 101 100.0
TPR.G20056 Trifolium pratense HOM05D001235 ORTHO05D001610 6.5e-19 97.4 61 80.3
Medtr7g098910 Medicago truncatula HOM05D001235 ORTHO05D001610 8.5e-19 97.1 61 78.7
Psat3g051360 Pisum sativum HOM05D001235 ORTHO05D001610 3.2e-18 95.1 61 75.4
Ca_08754_v3 Cicer arietinum L. HOM05D001235 ORTHO05D001610 2.2e-14 82.4 61 68.9
Lalb_Chr25g0289751 Lupinus albus HOM05D001235 ORTHO05D001610 2.2e-14 82.4 80 53.8
TPR.G671 Trifolium pratense HOM05D001235 ORTHO05D001610 2.4e-13 79.0 62 59.7
arahy.Tifrunner.gnm1.ann1.I05DEU Arachis hypogaea HOM05D001235 ORTHO05D001610 5.3e-13 77.8 61 59.0
arahy.Tifrunner.gnm1.ann1.W69CPD Arachis hypogaea HOM05D001235 ORTHO05D001610 5.3e-13 77.8 61 59.0
Lalb_Chr01g0019371 Lupinus albus HOM05D001235 ORTHO05D001610 9.1e-13 77.0 61 52.5
Lalb_Chr25g0289691 Lupinus albus HOM05D001235 ORTHO05D001610 1.6e-12 76.3 61 55.7
Phvul.001G166800 Phaseolus vulgaris HOM05D001235 ORTHO05D001610 1.0e-11 73.6 70 48.6
TWI59G0690 Tripterygium wilfordii HOM05D001235 ORTHO05D001610 1.3e-11 73.2 61 55.7
Eucgr.H00822 Eucalyptus grandis HOM05D001235 ORTHO05D001610 1.7e-11 72.8 61 55.7
Gohir.D08G210900 Gossypium hirsutum HOM05D001235 ORTHO05D001610 1.7e-11 72.8 61 59.0
PGR083G1081 Punica granatum HOM05D001235 ORTHO05D001610 1.7e-11 72.8 61 54.1
Glyma.03G170100 Glycine max HOM05D001235 ORTHO05D001610 2.9e-11 72.0 73 50.7
Gohir.A08G192900 Gossypium hirsutum HOM05D001235 ORTHO05D001610 2.9e-11 72.0 61 57.4
Gorai.004G223600 Gossypium raimondii HOM05D001235 ORTHO05D001610 2.9e-11 72.0 61 59.0
VMungo1383G2462 Vigna mungo HOM05D001235 ORTHO05D001610 2.9e-11 72.0 70 51.4
Lj1g0023506 Lotus japonicus HOM05D001235 ORTHO05D001610 3.8e-11 71.6 61 52.5
Potri.002G253000 Populus trichocarpa HOM05D001235 ORTHO05D001610 3.8e-11 71.6 75 44.0
arahy.Tifrunner.gnm1.ann1.JRB4HK Arachis hypogaea HOM05D001235 ORTHO05D001610 5.0e-11 71.2 61 52.5
arahy.Tifrunner.gnm1.ann1.UX6RQI Arachis hypogaea HOM05D001235 ORTHO05D001610 5.0e-11 71.2 61 52.5
Duzib138G1895 Durio zibethinus HOM05D001235 ORTHO05D001610 5.0e-11 71.2 75 49.3
Lalb_Chr01g0019401 Lupinus albus HOM05D001235 ORTHO05D001610 5.0e-11 71.2 73 50.7
Thecc.01G236400 Theobroma cacao HOM05D001235 ORTHO05D001610 5.0e-11 71.2 61 57.4
Phvul.001G166700 Phaseolus vulgaris HOM05D001235 ORTHO05D001610 6.5e-11 70.9 62 53.2
Sabra02G0192200 Salix brachista HOM05D001235 ORTHO05D001610 6.5e-11 70.9 72 45.8
Lalb_Chr20g0113351 Lupinus albus HOM05D001235 ORTHO05D001610 8.5e-11 70.5 73 50.7
QL09p044250 Quercus lobata HOM05D001235 ORTHO05D001610 8.5e-11 70.5 61 49.2
Cfa017724 Carpinus fangiana HOM05D001235 ORTHO05D001610 1.5e-10 69.7 98 38.8
Lalb_Chr25g0289701 Lupinus albus HOM05D001235 ORTHO05D001610 1.5e-10 69.7 61 55.7
Atru.chr5.1928 Acer truncatum HOM05D001235 ORTHO05D001610 1.9e-10 69.3 61 50.8
TPR.G7564 Trifolium pratense HOM05D001235 ORTHO05D001610 1.9e-10 69.3 61 54.1
Ciclev10024122m.g Citrus clementina HOM05D001235 ORTHO05D001610 2.5e-10 68.9 61 50.8
Cpa.g.sc8.202 Carica papaya HOM05D001235 ORTHO05D001610 3.2e-10 68.6 77 46.8
Potri.009G108000 Populus trichocarpa HOM05D001235 ORTHO05D001610 3.2e-10 68.6 61 44.3
VMungo1383G0973 Vigna mungo HOM05D001235 ORTHO05D001610 3.2e-10 68.6 62 51.6
CiPaw.04G108400 Carya illinoinensis HOM05D001235 ORTHO05D001610 4.2e-10 68.2 61 47.5
Lalb_Chr16g0388021 Lupinus albus HOM05D001235 ORTHO05D001610 4.2e-10 68.2 52 59.6
Manes.12G044300 Manihot esculenta HOM05D001235 ORTHO05D001610 4.2e-10 68.2 61 50.8
Phvul.001G168500 Phaseolus vulgaris HOM05D001235 ORTHO05D001610 5.5e-10 67.8 62 56.5
SHI14806 Sapria himalayana HOM05D001235 ORTHO05D001610 5.5e-10 67.8 61 49.2
SHI14818 Sapria himalayana HOM05D001235 ORTHO05D001610 5.5e-10 67.8 61 49.2
Ca_08770_v3 Cicer arietinum L. HOM05D001235 ORTHO05D001610 9.4e-10 67.0 61 54.1
Medtr7g099500 Medicago truncatula HOM05D001235 ORTHO05D001610 9.4e-10 67.0 61 52.5
Medtr8g063580 Medicago truncatula HOM05D001235 ORTHO05D001610 9.4e-10 67.0 61 54.1
FAN27G2703 Fragaria x ananassa HOM05D001235 ORTHO05D001610 1.2e-09 66.6 72 44.4
TWI14G1144 Tripterygium wilfordii HOM05D001235 ORTHO05D001610 1.2e-09 66.6 61 54.1
FAN15G3635 Fragaria x ananassa HOM05D001235 ORTHO05D001610 1.6e-09 66.2 72 44.4
Glyma.19G171400 Glycine max HOM05D001235 ORTHO05D001610 1.6e-09 66.2 61 45.9
RcHm_v2.0_Chr6g0285521 Rosa chinensis HOM05D001235 ORTHO05D001610 1.6e-09 66.2 61 47.5
Thhalv10005298m.g Eutrema salsugineum HOM05D001235 ORTHO05D001610 2.1e-09 65.9 61 49.2
AL6G38340 Arabidopsis lyrata HOM05D001235 ORTHO05D001610 2.7e-09 65.5 61 47.5
AT5G26594 Arabidopsis thaliana HOM05D001235 ORTHO05D001610 2.7e-09 65.5 61 49.2
BcaB07g29957 Brassica carinata HOM05D001235 ORTHO05D001610 2.7e-09 65.5 61 47.5
Eucgr.H00821 Eucalyptus grandis HOM05D001235 ORTHO05D001610 2.7e-09 65.5 61 49.2
Prupe.8G209300 Prunus persica HOM05D001235 ORTHO05D001610 2.7e-09 65.5 61 49.2
arahy.Tifrunner.gnm1.ann1.K7XCE3 Arachis hypogaea HOM05D001235 ORTHO05D001610 3.6e-09 65.1 73 46.6
CANSAT01G3094 Cannabis sativa HOM05D001235 ORTHO05D001610 3.6e-09 65.1 61 47.5
CARHR187030 Cardamine hirsuta HOM05D001235 ORTHO05D001610 3.6e-09 65.1 52 53.8
FvH4_2g19810 Fragaria vesca HOM05D001235 ORTHO05D001610 3.6e-09 65.1 72 44.4
FAN24G2146 Fragaria x ananassa HOM05D001235 ORTHO05D001610 3.6e-09 65.1 72 44.4
Lj1g0016975 Lotus japonicus HOM05D001235 ORTHO05D001610 3.6e-09 65.1 62 54.8
Aa31LG11G10120 Aethionema arabicum HOM05D001235 ORTHO05D001610 4.7e-09 64.7 61 47.5
arahy.Tifrunner.gnm1.ann1.I7RWJW Arachis hypogaea HOM05D001235 ORTHO05D001610 4.7e-09 64.7 73 46.6
BraA09t36223Z Brassica rapa HOM05D001235 ORTHO05D001610 4.7e-09 64.7 61 47.5
Carub.0006s2414 Capsella rubella HOM05D001235 ORTHO05D001610 4.7e-09 64.7 61 47.5
Sabra09G0082400 Salix brachista HOM05D001235 ORTHO05D001610 4.7e-09 64.7 61 45.9
Duzib211G0589 Durio zibethinus HOM05D001235 ORTHO05D001610 6.1e-09 64.3 61 47.5
Oeu060298.1 Olea europaea HOM05D001235 ORTHO05D001610 6.1e-09 64.3 61 47.5
VMungo1184G0001 Vigna mungo HOM05D001235 ORTHO05D001610 6.1e-09 64.3 62 53.2
BcaC03g17861 Brassica carinata HOM05D001235 ORTHO05D001610 8.0e-09 63.9 61 45.9
BcaC04g23557 Brassica carinata HOM05D001235 ORTHO05D001610 8.0e-09 63.9 61 45.9
A02p39300 Brassica napus HOM05D001235 ORTHO05D005684 8.0e-09 63.9 61 45.9
C02p59020 Brassica napus HOM05D001235 ORTHO05D005684 8.0e-09 63.9 61 45.9
BolC2t11957H Brassica oleracea HOM05D001235 ORTHO05D005684 8.0e-09 63.9 61 45.9
BraA02t08895Z Brassica rapa HOM05D001235 ORTHO05D005684 8.0e-09 63.9 61 45.9
Eucgr.H00820 Eucalyptus grandis HOM05D001235 ORTHO05D001610 8.0e-09 63.9 52 55.8
Thecc.02G225000 Theobroma cacao HOM05D001235 ORTHO05D001610 8.0e-09 63.9 61 47.5
MD05G1182700 Malus domestica HOM05D001235 ORTHO05D001610 1.0e-08 63.5 73 42.5
MD10G1170800 Malus domestica HOM05D001235 ORTHO05D001610 1.0e-08 63.5 73 42.5
BcaB04g19732 Brassica carinata HOM05D001235 ORTHO05D001610 1.4e-08 63.2 61 45.9
BcaC04g23619 Brassica carinata HOM05D001235 ORTHO05D005684 1.4e-08 63.2 61 45.9
BolC9t53562H Brassica oleracea HOM05D001235 ORTHO05D001610 1.4e-08 63.2 61 45.9
Haze_02578 Corylus avellana HOM05D001235 ORTHO05D001610 1.4e-08 63.2 61 49.2
BcaNung03966 Brassica carinata HOM05D001235 ORTHO05D001610 1.8e-08 62.8 61 44.3
Haze_24743 Corylus avellana HOM05D001235 ORTHO05D001610 1.8e-08 62.8 61 47.5
Ciclev10006872m.g Citrus clementina HOM05D001235 ORTHO05D001610 2.3e-08 62.4 61 47.5
Sp2g21440 Schrenkiella parvula HOM05D001235 ORTHO05D001610 2.3e-08 62.4 61 45.9
AUR62026111 Chenopodium quinoa HOM05D001235 ORTHO05D001610 3.0e-08 62.0 61 47.5
Ciclev10006814m.g Citrus clementina HOM05D001235 ORTHO05D001610 3.0e-08 62.0 61 45.9
Lj1g0002527 Lotus japonicus HOM05D001235 ORTHO05D001610 3.0e-08 62.0 51 51.0
Glyma.19G171300 Glycine max HOM05D001235 ORTHO05D001610 6.7e-08 60.8 49 57.1
FAN05G0439 Fragaria x ananassa HOM05D001235 ORTHO05D001610 8.8e-08 60.5 61 44.3
Atru.chr2.1136 Acer truncatum HOM05D001235 ORTHO05D001610 1.1e-07 60.1 61 49.2
A09p05820 Brassica napus HOM05D001235 ORTHO05D001610 1.1e-07 60.1 51 51.0
FvH4_6g01360 Fragaria vesca HOM05D001235 ORTHO05D001610 1.1e-07 60.1 61 44.3
FAN05G4843 Fragaria x ananassa HOM05D001235 ORTHO05D001610 1.1e-07 60.1 61 44.3
FAN09G3685 Fragaria x ananassa HOM05D001235 ORTHO05D001610 1.1e-07 60.1 61 44.3
FAN14G0714 Fragaria x ananassa HOM05D001235 ORTHO05D001610 1.1e-07 60.1 61 44.3
FAN14G5587 Fragaria x ananassa HOM05D001235 ORTHO05D001610 1.1e-07 60.1 61 44.3
Glyma.03G170200 Glycine max HOM05D001235 ORTHO05D001610 1.1e-07 60.1 52 50.0
Gohir.A08G105701 Gossypium hirsutum HOM05D001235 ORTHO05D001610 1.1e-07 60.1 61 45.9
Gohir.D08G116200 Gossypium hirsutum HOM05D001235 ORTHO05D001610 1.1e-07 60.1 61 45.9
Gorai.004G125100 Gossypium raimondii HOM05D001235 ORTHO05D001610 1.1e-07 60.1 61 45.9
THA.LOC104820076 Tarenaya hassleriana HOM05D001235 ORTHO05D001610 1.5e-07 59.7 44 54.5
PSO732G0465 Papaver somniferum HOM05D001235 ORTHO05D001610 2.6e-07 58.9 61 41.0
Potri.019G024900 Populus trichocarpa HOM05D001235 ORTHO05D001610 4.4e-07 58.2 61 44.3
Actinidia37572 Actinidia chinensis HOM05D002889 ORTHO05D003366 5.7e-07 57.8 68 39.7
AUR62015280 Chenopodium quinoa HOM05D001235 ORTHO05D001610 5.7e-07 57.8 61 42.6
PSO675G4108 Papaver somniferum HOM05D001235 ORTHO05D001610 5.7e-07 57.8 61 44.3
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 5.7e-07 57.8 61 44.3
Thecc.05G265000 Theobroma cacao HOM05D001235 ORTHO05D001610 5.7e-07 57.8 85 36.5
COL.COLO4_13957 Corchorus olitorius HOM05D001235 ORTHO05D001610 7.5e-07 57.4 61 42.6
Haze_04482 Corylus avellana HOM05D001235 ORTHO05D001610 7.5e-07 57.4 68 42.6
Eucgr.B02166 Eucalyptus grandis HOM05D001235 ORTHO05D001610 7.5e-07 57.4 63 46.0
RcHm_v2.0_Chr3g0448931 Rosa chinensis HOM05D001235 ORTHO05D001610 7.5e-07 57.4 61 41.0
Sabra19G0034600 Salix brachista HOM05D001235 ORTHO05D001610 7.5e-07 57.4 61 44.3
CDE02G3575 Ceratophyllum demersum HOM05D001235 ORTHO05D001610 9.7e-07 57.0 61 44.3
Ciclev10017880m.g Citrus clementina HOM05D001235 ORTHO05D001610 9.7e-07 57.0 61 42.6
COL.COLO4_38181 Corchorus olitorius HOM05D001235 ORTHO05D001610 9.7e-07 57.0 61 42.6
COL.COLO4_10349 Corchorus olitorius HOM05D001235 ORTHO05D001610 1.3e-06 56.6 61 41.0
Migut.M01873 Erythranthe guttata HOM05D001235 ORTHO05D001610 1.3e-06 56.6 62 43.5
Eucgr.B02165 Eucalyptus grandis HOM05D001235 ORTHO05D001610 1.3e-06 56.6 63 44.4
PGR102G3214 Punica granatum HOM05D001235 ORTHO05D001610 1.3e-06 56.6 70 41.4
ClCG11G010210 Citrullus lanatus HOM05D001235 ORTHO05D001610 1.7e-06 56.2 61 41.0
Manes.13G042900 Manihot esculenta HOM05D001235 ORTHO05D001610 1.7e-06 56.2 62 45.2
TWI34G0360 Tripterygium wilfordii HOM05D001235 ORTHO05D001610 1.7e-06 56.2 61 42.6
TAR362G0194 Trochodendron aralioides HOM05D001235 ORTHO05D001610 1.7e-06 56.2 61 44.3
AUR62024520 Chenopodium quinoa HOM05D001235 ORTHO05D001610 2.2e-06 55.8 61 42.6
Haze_04491 Corylus avellana HOM05D001235 ORTHO05D001610 2.2e-06 55.8 68 41.2
PSO675G5202 Papaver somniferum HOM05D001235 ORTHO05D001610 2.8e-06 55.5 61 41.0
Potri.019G025000 Populus trichocarpa HOM05D001235 ORTHO05D001610 2.8e-06 55.5 57 45.6
TAR365G0591 Trochodendron aralioides HOM05D001235 ORTHO05D001610 2.8e-06 55.5 61 41.0
GSVIVG01026349001 Vitis vinifera HOM05D001235 ORTHO05D001610 2.8e-06 55.5 61 42.6
Aqoxy5G00539 Aquilegia oxysepala HOM05D001235 ORTHO05D001610 3.7e-06 55.1 61 45.9
Duzib128G1418 Durio zibethinus HOM05D001235 ORTHO05D001610 3.7e-06 55.1 61 42.6
Lalb_Chr03g0035121 Lupinus albus HOM05D001235 ORTHO05D001610 3.7e-06 55.1 38 65.8
Duzib177G0932 Durio zibethinus HOM05D001235 ORTHO05D001610 4.8e-06 54.7 61 42.6
Gorai.013G189000 Gossypium raimondii HOM05D001235 ORTHO05D001610 4.8e-06 54.7 61 41.0
CSS0005175 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D001610 6.3e-06 54.3 61 44.3
CSS0008762 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D001610 6.3e-06 54.3 61 41.0
Cpa.g.sc51.33 Carica papaya HOM05D001235 ORTHO05D001610 8.2e-06 53.9 61 42.6
AUR62044464 Chenopodium quinoa HOM05D001235 ORTHO05D001610 8.2e-06 53.9 61 41.0


User provided reference genes

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