Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0014s0040 Medicago truncatula HOM05D000665 ORTHO05D000140 5.2e-125 451.1 226 100.0
Medtr7g102860 Medicago truncatula HOM05D000665 ORTHO05D000140 5.5e-50 201.8 250 50.0
Glyma.09G072900 Glycine max HOM05D000665 ORTHO05D000140 5.3e-37 158.7 243 42.0
Glyma.11G208100 Glycine max HOM05D000665 ORTHO05D000140 4.5e-36 155.6 243 41.2
Glyma.08G025200 Glycine max HOM05D000665 ORTHO05D000140 2.2e-35 153.3 230 42.6
Glyma.11G158600 Glycine max HOM05D000665 ORTHO05D000140 2.0e-31 140.2 164 48.8
Lj5g0014380 Lotus japonicus HOM05D000665 ORTHO05D000140 2.8e-30 136.3 267 36.7
Lj6g0001109 Lotus japonicus HOM05D000665 ORTHO05D000140 2.8e-30 136.3 267 36.7
Lj1g0005320 Lotus japonicus HOM05D000665 ORTHO05D000140 3.7e-30 136.0 267 36.7
Glyma.09G131700 Glycine max HOM05D000665 ORTHO05D000140 1.1e-29 134.4 138 53.6
Lj1g0011582 Lotus japonicus HOM05D000665 ORTHO05D000140 3.1e-29 132.9 239 38.1
Glyma.06G254400 Glycine max HOM05D000665 ORTHO05D000140 3.5e-28 129.4 164 45.7
Lj2g0022922 Lotus japonicus HOM05D000665 ORTHO05D000140 1.2e-25 120.9 258 35.7
Glyma.17G193900 Glycine max HOM05D000665 ORTHO05D000140 4.7e-25 119.0 163 44.2
Glyma.07G209700 Glycine max HOM05D000665 ORTHO05D000140 6.1e-25 118.6 99 60.6
Lj2g0005129 Lotus japonicus HOM05D000034 ORTHO05D000037 4.8e-22 109.0 133 47.4
Glyma.20G028300 Glycine max HOM05D000665 ORTHO05D000140 8.2e-22 108.2 179 38.5
Glyma.05G097200 Glycine max HOM05D000665 ORTHO05D000140 1.8e-21 107.1 255 34.5
Glyma.02G156600 Glycine max HOM05D000665 ORTHO05D000140 5.9e-20 102.1 255 33.7
Glyma.18G141600 Glycine max HOM05D000665 ORTHO05D000140 1.9e-18 97.1 252 34.1
TPR.G26987 Trifolium pratense HOM05D000665 ORTHO05D000140 5.5e-18 95.5 83 62.7
Glyma.04G130400 Glycine max HOM05D000665 ORTHO05D000140 3.6e-17 92.8 152 41.4
Lj2g0007472 Lotus japonicus HOM05D000034 ORTHO05D000037 6.1e-17 92.0 82 58.5
Glyma.16G081300 Glycine max HOM05D000665 ORTHO05D000140 1.0e-16 91.3 247 32.8
Glyma.05G095200 Glycine max HOM05D000665 ORTHO05D000140 3.0e-16 89.7 80 56.2
Psat1g190200 Pisum sativum HOM05D000665 ORTHO05D000140 2.6e-15 86.7 47 87.2
COL.COLO4_11921 Corchorus olitorius HOM05D000665 ORTHO05D000140 9.8e-15 84.7 259 28.6
COL.COLO4_35899 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.8e-13 80.5 168 32.1
Glyma.02G179401 Glycine max HOM05D000665 ORTHO05D000140 3.1e-13 79.7 111 45.9
Medtr5g086320 Medicago truncatula HOM05D000665 ORTHO05D000140 4.1e-13 79.3 68 63.2
Glyma.08G287150 Glycine max HOM05D000665 ORTHO05D000140 1.2e-12 77.8 74 56.8
COL.COLO4_07541 Corchorus olitorius HOM05D000665 ORTHO05D000140 3.5e-12 76.3 152 36.2
Glyma.13G077400 Glycine max HOM05D000665 ORTHO05D000140 5.9e-12 75.5 162 35.8
COL.COLO4_13013 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.3e-11 74.3 164 31.1
Prupe.1G245200 Prunus persica HOM05D000665 ORTHO05D000140 1.9e-10 70.5 276 25.0
FAN24G3328 Fragaria x ananassa HOM05D000665 ORTHO05D000140 4.2e-10 69.3 121 34.7
Prupe.6G167700 Prunus persica HOM05D000665 ORTHO05D000140 7.2e-10 68.6 229 25.3
Glyma.09G072800 Glycine max HOM05D000665 ORTHO05D000140 1.6e-09 67.4 96 45.8
RcHm_v2.0_Chr1g0330381 Rosa chinensis HOM05D000665 ORTHO05D000140 1.6e-09 67.4 94 40.4
FAN27G0927 Fragaria x ananassa HOM05D000665 ORTHO05D000140 2.1e-09 67.0 67 47.8
RcHm_v2.0_Chr3g0485151 Rosa chinensis HOM05D000665 ORTHO05D000140 2.1e-09 67.0 68 48.5
Medtr4g009630 Medicago truncatula HOM05D000563 ORTHO05D000536 2.7e-09 66.6 32 90.6
FvH4_2g13781 Fragaria vesca HOM05D000665 ORTHO05D000140 3.6e-09 66.2 186 28.5
FAN19G1575 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.4e-08 64.3 141 34.0
Prupe.7G027800 Prunus persica HOM05D000665 ORTHO05D000140 1.4e-08 64.3 146 28.8
FvH4_1g20120 Fragaria vesca HOM05D000665 ORTHO05D000140 1.8e-08 63.9 126 33.3
Prupe.1G287900 Prunus persica HOM05D000665 ORTHO05D000140 1.8e-08 63.9 122 31.1
Glyma.03G069900 Glycine max HOM05D000665 ORTHO05D000140 2.3e-08 63.5 138 30.4
FAN27G2455 Fragaria x ananassa HOM05D001671 ORTHO05D000140 3.0e-08 63.2 118 34.7
TPR.G40119 Trifolium pratense HOM05D000665 ORTHO05D000140 1.5e-07 60.8 31 90.3
Prupe.4G256700 Prunus persica HOM05D000665 ORTHO05D000140 4.4e-07 59.3 156 27.6
Migut.C00054 Erythranthe guttata HOM05D000665 ORTHO05D000140 1.3e-06 57.8 126 27.0
FAN24G0085 Fragaria x ananassa HOM05D000665 ORTHO05D000140 1.3e-06 57.8 81 42.0
Prupe.5G014200 Prunus persica HOM05D000665 ORTHO05D000140 1.7e-06 57.4 141 29.8
RcHm_v2.0_Chr7g0231381 Rosa chinensis HOM05D000665 ORTHO05D000140 2.2e-06 57.0 131 32.1
RcHm_v2.0_Chr4g0405761 Rosa chinensis HOM05D000665 ORTHO05D000140 3.7e-06 56.2 129 35.7
RcHm_v2.0_Chr5g0053961 Rosa chinensis HOM05D009145 ORTHO05D000140 3.7e-06 56.2 131 32.1
FAN26G1049 Fragaria x ananassa HOM05D000665 ORTHO05D000140 6.3e-06 55.5 138 33.3


User provided reference genes

Program Settings