Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0004s0260 Medicago truncatula HOM05D006550 ORTHO05D008630 4.6e-192 674.5 361 100.0
Medtr7g072210 Medicago truncatula HOM05D006550 ORTHO05D008630 2.5e-161 572.4 385 84.7
Medtr1g106885 Medicago truncatula HOM05D006550 ORTHO05D008630 1.5e-150 536.6 391 77.2
Medtr6g453050 Medicago truncatula HOM05D006550 ORTHO05D008630 1.4e-140 503.4 324 80.2
Medtr5g077245 Medicago truncatula HOM05D006550 ORTHO05D008630 2.0e-139 499.6 391 73.7
Medtr7g083520 Medicago truncatula HOM05D006550 ORTHO05D008630 1.3e-138 496.9 298 86.2
Medtr2g022120 Medicago truncatula HOM05D006550 ORTHO05D008630 3.2e-137 492.3 394 73.4
Medtr3g464850 Medicago truncatula HOM05D006550 ORTHO05D008630 4.0e-135 485.3 258 95.0
Medtr1g075060 Medicago truncatula HOM05D006550 ORTHO05D008630 8.8e-135 484.2 372 75.0
Medtr4g026120 Medicago truncatula HOM05D006550 ORTHO05D008630 3.7e-133 478.8 330 74.5
Medtr4g036435 Medicago truncatula HOM05D006550 ORTHO05D008630 3.7e-133 478.8 330 74.5
Medtr5g066280 Medicago truncatula HOM05D006550 ORTHO05D008630 1.8e-132 476.5 330 74.2
Medtr3g067785 Medicago truncatula HOM05D006550 ORTHO05D008630 1.6e-131 473.4 330 73.9
Medtr4g013220 Medicago truncatula HOM05D006550 ORTHO05D008630 3.5e-131 472.2 330 73.9
Medtr1g046830 Medicago truncatula HOM05D006550 ORTHO05D008630 1.3e-130 470.3 292 80.8
Medtr6g051405 Medicago truncatula HOM05D006550 ORTHO05D008630 5.4e-124 448.4 393 64.1
Medtr1g100375 Medicago truncatula HOM05D006550 ORTHO05D008630 7.0e-124 448.0 393 64.1
Medtr3g464170 Medicago truncatula HOM05D006550 ORTHO05D008630 7.0e-124 448.0 393 64.1
Medtr6g092533 Medicago truncatula HOM05D006550 ORTHO05D008630 4.5e-123 445.3 394 68.3
Medtr1g471070 Medicago truncatula HOM05D006550 ORTHO05D008630 1.9e-121 439.9 393 63.4
Medtr3g450670 Medicago truncatula HOM05D006550 ORTHO05D008630 1.9e-121 439.9 393 63.4
Medtr3g464310 Medicago truncatula HOM05D006550 ORTHO05D008630 3.6e-120 435.6 382 63.9
Medtr6g016670 Medicago truncatula HOM05D006550 ORTHO05D008630 3.6e-120 435.6 382 63.9
Medtr7g461350 Medicago truncatula HOM05D006550 ORTHO05D008630 3.6e-120 435.6 382 63.9
Medtr2g072860 Medicago truncatula HOM05D006550 ORTHO05D008630 3.4e-110 402.5 306 70.6
Medtr0021s0270 Medicago truncatula HOM05D006550 ORTHO05D008630 1.1e-108 397.5 234 91.5
Medtr3g093185 Medicago truncatula HOM05D006550 ORTHO05D008630 1.8e-95 353.6 369 58.3
Medtr7g062380 Medicago truncatula HOM05D006550 ORTHO05D008630 3.2e-92 342.8 265 69.4
Medtr8g045460 Medicago truncatula HOM05D006550 ORTHO05D008630 1.9e-84 317.0 386 52.3
Medtr1g086750 Medicago truncatula HOM05D006550 ORTHO05D008630 4.6e-83 312.4 215 74.9
Medtr1g026240 Medicago truncatula HOM05D006550 ORTHO05D008630 1.1e-81 307.8 294 60.5
Medtr6g065130 Medicago truncatula HOM05D006550 ORTHO05D008630 6.2e-80 302.0 228 69.3
Medtr1g048350 Medicago truncatula HOM05D006550 ORTHO05D008630 6.0e-75 285.4 296 56.8
Medtr2g073530 Medicago truncatula HOM05D006550 ORTHO05D008630 1.3e-74 284.3 275 57.8
CARHR054710 Cardamine hirsuta HOM05D006550 ORTHO05D008630 2.0e-70 270.4 385 43.4
AL8G18760 Arabidopsis lyrata HOM05D006550 ORTHO05D008630 6.4e-69 265.4 394 42.6
Medtr1454s0010 Medicago truncatula HOM05D006550 ORTHO05D008630 4.9e-61 239.2 128 88.3
Medtr3g074670 Medicago truncatula HOM05D006550 ORTHO05D008630 5.5e-60 235.7 362 48.3
Medtr8g017060 Medicago truncatula HOM05D006550 ORTHO05D008630 1.6e-59 234.2 206 60.7
Medtr3g108270 Medicago truncatula HOM05D006550 ORTHO05D008630 5.1e-58 229.2 230 56.5
TPR.G13907 Trifolium pratense HOM05D006550 ORTHO05D008630 6.7e-58 228.8 238 61.8
Medtr6g069240 Medicago truncatula HOM05D006550 ORTHO05D008630 4.3e-57 226.1 149 77.9
Medtr4g046090 Medicago truncatula HOM05D006550 ORTHO05D008630 5.7e-57 225.7 219 59.4
Medtr1240s0010 Medicago truncatula HOM05D006550 ORTHO05D008630 6.9e-55 218.8 173 74.6
Medtr3g110230 Medicago truncatula HOM05D006550 ORTHO05D008630 2.1e-51 207.2 174 70.1
Medtr2g014790 Medicago truncatula HOM05D006550 ORTHO05D008630 3.6e-51 206.5 150 80.7
TPR.G22538 Trifolium pratense HOM05D006550 ORTHO05D008630 3.7e-48 196.4 178 57.9
Medtr3g016340 Medicago truncatula HOM05D006550 ORTHO05D008630 1.8e-47 194.1 140 66.4
Medtr6g079450 Medicago truncatula HOM05D006550 ORTHO05D008630 2.0e-46 190.7 184 58.2
AL3G47380 Arabidopsis lyrata HOM05D006550 ORTHO05D008630 8.5e-45 185.3 377 38.5
CARHR151080 Cardamine hirsuta HOM05D006550 ORTHO05D008630 1.6e-43 181.0 220 45.0
Medtr2g014785 Medicago truncatula HOM05D006550 ORTHO05D008630 3.1e-39 166.8 146 71.2
Medtr8g065645 Medicago truncatula HOM05D006550 ORTHO05D008630 3.1e-39 166.8 177 55.4
Psat0s567g0040 Pisum sativum HOM05D006550 ORTHO05D008630 5.3e-39 166.0 172 49.4
CARHR058790 Cardamine hirsuta HOM05D006550 ORTHO05D008630 9.1e-39 165.2 163 51.5
Medtr3g068050 Medicago truncatula HOM05D006550 ORTHO05D008630 7.7e-38 162.2 242 45.9
CARHR154020 Cardamine hirsuta HOM05D006550 ORTHO05D008630 1.1e-36 158.3 196 45.9
Medtr1g047160 Medicago truncatula HOM05D006550 ORTHO05D008630 1.2e-35 154.8 169 54.4
Medtr1g047150 Medicago truncatula HOM05D006550 ORTHO05D008630 6.1e-35 152.5 97 90.7
Medtr2g073570 Medicago truncatula HOM05D006550 ORTHO05D008630 1.8e-34 151.0 164 53.0
Medtr3g108260 Medicago truncatula HOM05D006550 ORTHO05D008630 2.2e-32 144.1 97 86.6
TPR.G21052 Trifolium pratense HOM05D006550 ORTHO05D008630 4.8e-32 142.9 127 63.0
TPR.G31092 Trifolium pratense HOM05D006550 ORTHO05D008630 4.8e-32 142.9 123 63.4
TPR.G35168 Trifolium pratense HOM05D006550 ORTHO05D008630 1.6e-30 137.9 128 60.2
Medtr7g084840 Medicago truncatula HOM05D006550 ORTHO05D008630 7.7e-30 135.6 98 93.9
Medtr1g106945 Medicago truncatula HOM05D006550 ORTHO05D008630 8.5e-29 132.1 82 79.3
Medtr3g053390 Medicago truncatula HOM05D006550 ORTHO05D008630 2.5e-28 130.6 138 59.4
Medtr1g106935 Medicago truncatula HOM05D006550 ORTHO05D008630 3.6e-27 126.7 118 68.6
CARHR052930 Cardamine hirsuta HOM05D006550 ORTHO05D008630 4.7e-27 126.3 187 42.8
TPR.G21507 Trifolium pratense HOM05D006550 ORTHO05D008630 4.8e-24 116.3 106 62.3
TPR.G28141 Trifolium pratense HOM05D006550 ORTHO05D008630 1.2e-22 111.7 179 45.3
Medtr0007s0250 Medicago truncatula HOM05D006550 ORTHO05D008630 1.7e-21 107.8 283 33.6
Medtr7g068700 Medicago truncatula HOM05D006550 ORTHO05D008630 5.0e-21 106.3 129 52.7
Lj3g0017791 Lotus japonicus HOM05D006550 ORTHO05D008630 6.5e-21 105.9 135 54.8
CARHR257980 Cardamine hirsuta HOM05D006550 ORTHO05D008630 1.5e-20 104.8 62 67.7
Lj3g0014744 Lotus japonicus HOM05D006550 ORTHO05D008630 1.5e-20 104.8 135 54.1
Lj3g0008820 Lotus japonicus HOM05D006550 ORTHO05D008630 2.5e-20 104.0 135 53.3
Lj4g0022286 Lotus japonicus HOM05D006550 ORTHO05D008630 2.5e-20 104.0 135 53.3
Medtr7g105700 Medicago truncatula HOM05D006550 ORTHO05D008630 3.2e-20 103.6 83 91.6
Medtr5g048890 Medicago truncatula HOM05D006550 ORTHO05D008630 7.2e-20 102.4 66 69.7
Medtr3g075000 Medicago truncatula HOM05D006550 ORTHO05D008630 1.2e-19 101.7 69 69.6
BolC3t14362H Brassica oleracea HOM05D006550 ORTHO05D008630 1.5e-17 94.7 261 31.8
AT1G36675 Arabidopsis thaliana HOM05D006550 ORTHO05D008630 7.5e-17 92.4 222 36.0
Lj2g0009425 Lotus japonicus HOM05D006550 ORTHO05D008630 7.5e-17 92.4 135 51.9
CARHR214550 Cardamine hirsuta HOM05D006550 ORTHO05D008630 1.3e-16 91.7 74 56.8
Lj2g0024473 Lotus japonicus HOM05D006550 ORTHO05D008630 1.3e-16 91.7 135 51.1
TPR.G31250 Trifolium pratense HOM05D000214 ORTHO05D013285 3.7e-16 90.1 96 54.2
CARHR216880 Cardamine hirsuta HOM05D006550 ORTHO05D008630 6.3e-16 89.4 57 57.9
Medtr8g063810 Medicago truncatula HOM05D006550 ORTHO05D008630 9.1e-15 85.5 109 48.6
CARHR216890 Cardamine hirsuta HOM05D006550 ORTHO05D008630 1.6e-14 84.7 84 61.9
Medtr0658s0020 Medicago truncatula HOM05D006550 ORTHO05D008630 2.0e-14 84.3 55 81.8
Medtr3g108300 Medicago truncatula HOM05D006550 ORTHO05D008630 2.0e-14 84.3 62 69.4
Lj1g0023170 Lotus japonicus HOM05D006550 ORTHO05D008630 4.5e-14 83.2 131 45.0
Lj3g0003228 Lotus japonicus HOM05D006550 ORTHO05D008630 5.9e-14 82.8 125 48.0
Medtr3g053400 Medicago truncatula HOM05D006550 ORTHO05D008630 5.9e-14 82.8 76 61.8
Medtr7g080480 Medicago truncatula HOM05D006550 ORTHO05D008630 1.7e-13 81.3 97 51.5
Medtr1g101850 Medicago truncatula HOM05D006550 ORTHO05D008630 5.0e-13 79.7 156 42.3
CARHR121700 Cardamine hirsuta HOM05D006550 ORTHO05D008630 1.9e-12 77.8 80 58.8
TPR.G28145 Trifolium pratense HOM05D006550 ORTHO05D008630 8.0e-11 72.4 86 54.7
CARHR104360 Cardamine hirsuta HOM05D006550 ORTHO05D008630 1.0e-10 72.0 77 54.5
AT2G10975 Arabidopsis thaliana HOM05D006550 ORTHO05D008630 1.4e-10 71.6 118 44.1
CARHR216860 Cardamine hirsuta HOM05D006550 ORTHO05D008630 2.3e-10 70.9 76 55.3
Medtr4g063620 Medicago truncatula HOM05D006550 ORTHO05D264284 8.8e-10 68.9 78 82.1
BolC9t57365H Brassica oleracea HOM05D000589 ORTHO05D000401 2.0e-09 67.8 110 30.9
BolC9t58095H Brassica oleracea HOM05D000589 ORTHO05D000401 2.0e-09 67.8 143 30.8
AL8G19140 Arabidopsis lyrata HOM05D006550 ORTHO05D008630 4.4e-09 66.6 88 44.3
BcaC01g01358 Brassica carinata HOM05D000589 ORTHO05D000401 4.4e-09 66.6 304 23.0
Medtr3g108490 Medicago truncatula HOM05D006550 ORTHO05D008630 4.4e-09 66.6 106 43.4
Medtr7g018110 Medicago truncatula HOM05D006550 ORTHO05D008630 7.5e-09 65.9 98 45.9
BolC9t56217H Brassica oleracea HOM05D000589 ORTHO05D000401 1.7e-08 64.7 102 31.4
AT3G29645 Arabidopsis thaliana HOM05D006550 ORTHO05D008630 4.9e-08 63.2 89 48.3
AL8G16460 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 6.3e-08 62.8 105 33.3
BolC2t10374H Brassica oleracea HOM05D000589 ORTHO05D000401 6.3e-08 62.8 192 29.2
BolC9t53773H Brassica oleracea HOM05D000589 ORTHO05D000401 6.3e-08 62.8 271 26.2
AL8G33970 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 8.3e-08 62.4 105 33.3
CSS0004495 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 1.4e-07 61.6 144 26.4
BolC9t58301H Brassica oleracea HOM05D000589 ORTHO05D000401 1.8e-07 61.2 111 30.6
BolC4t25233H Brassica oleracea HOM05D000589 ORTHO05D000401 3.1e-07 60.5 220 25.5
BolC2t10503H Brassica oleracea HOM05D000589 ORTHO05D000401 4.1e-07 60.1 200 26.5
BolC7t44420H Brassica oleracea HOM05D000589 ORTHO05D000401 4.1e-07 60.1 263 23.6
Thhalv10000723m.g Eutrema salsugineum HOM05D000589 ORTHO05D000401 4.1e-07 60.1 295 26.8
FvH4_1g21031 Fragaria vesca HOM05D001576 ORTHO05D000401 4.1e-07 60.1 101 26.7
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 5.4e-07 59.7 273 26.4
BolC9t54041H Brassica oleracea HOM05D000589 ORTHO05D000401 5.4e-07 59.7 168 31.0
CARHR214560 Cardamine hirsuta HOM05D006550 ORTHO05D008630 5.4e-07 59.7 74 44.6
BcaB03g16631 Brassica carinata HOM05D000589 ORTHO05D000401 7.0e-07 59.3 246 25.6
BolC6t39513H Brassica oleracea HOM05D000589 ORTHO05D000401 7.0e-07 59.3 174 24.1
Medtr3g053410 Medicago truncatula HOM05D006550 ORTHO05D008630 7.0e-07 59.3 40 60.0
Medtr5g020480 Medicago truncatula HOM05D006550 ORTHO05D008630 7.0e-07 59.3 49 63.3
BolC9t55279H Brassica oleracea HOM05D000589 ORTHO05D000401 9.2e-07 58.9 149 30.2
Carub.0005s0926 Capsella rubella HOM05D000589 ORTHO05D000401 9.2e-07 58.9 315 24.4
Medtr4g063670 Medicago truncatula HOM05D000589 ORTHO05D000401 9.2e-07 58.9 228 23.2
AL3G20450 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 1.2e-06 58.5 303 26.4
BcaC07g36993 Brassica carinata HOM05D000589 ORTHO05D000401 1.2e-06 58.5 249 24.5
BolC4t23741H Brassica oleracea HOM05D000589 ORTHO05D000401 1.2e-06 58.5 116 27.6
BcaC06g30941 Brassica carinata HOM05D000589 ORTHO05D000401 1.6e-06 58.2 94 29.8
BolC6t39059H Brassica oleracea HOM05D000589 ORTHO05D000401 1.6e-06 58.2 95 29.5
BolC9t58427H Brassica oleracea HOM05D000589 ORTHO05D000401 1.6e-06 58.2 84 29.8
AL5G28650 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 2.0e-06 57.8 105 33.3
BcaNung00819 Brassica carinata HOM05D000589 ORTHO05D000401 2.0e-06 57.8 215 26.5
BolC2t08273H Brassica oleracea HOM05D000589 ORTHO05D000401 2.0e-06 57.8 84 29.8
CSS0012008 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.0e-06 57.8 270 26.7
CSS0015368 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.0e-06 57.8 270 26.7
AL6G29040 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 2.7e-06 57.4 105 32.4
BolC4t27712H Brassica oleracea HOM05D000589 ORTHO05D000401 2.7e-06 57.4 228 24.6
CSS0005302 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.7e-06 57.4 270 26.7
CSS0014799 Camellia sinensis var. sinensis HOM05D001576 ORTHO05D000401 2.7e-06 57.4 270 26.7
TPR.G23713 Trifolium pratense HOM05D006550 ORTHO05D008630 2.7e-06 57.4 44 65.9
BolC4t25880H Brassica oleracea HOM05D000589 ORTHO05D000401 3.5e-06 57.0 87 29.9
BolC4t26739H Brassica oleracea HOM05D000589 ORTHO05D000401 3.5e-06 57.0 211 21.3
AL4G19930 Arabidopsis lyrata HOM05D006550 ORTHO05D012798 4.5e-06 56.6 88 42.0
AL7G47730 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 4.5e-06 56.6 303 26.1
BolC9t55113H Brassica oleracea HOM05D000589 ORTHO05D000401 4.5e-06 56.6 103 30.1
BolC6t35673H Brassica oleracea HOM05D000589 ORTHO05D000401 5.9e-06 56.2 189 26.5
BolC7t43030H Brassica oleracea HOM05D000589 ORTHO05D000401 5.9e-06 56.2 175 25.1
Medtr8g065640 Medicago truncatula HOM05D006550 ORTHO05D008630 5.9e-06 56.2 39 76.9
AL5G33150 Arabidopsis lyrata HOM05D000589 ORTHO05D000401 7.8e-06 55.8 328 26.2
BcaB04g18072 Brassica carinata HOM05D000589 ORTHO05D000401 7.8e-06 55.8 237 24.9
BolC6t36496H Brassica oleracea HOM05D000589 ORTHO05D000401 7.8e-06 55.8 164 24.4


User provided reference genes

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