Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 9.8e-192 673.3 346 100.0
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.3e-156 556.6 354 85.6
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 1.8e-148 529.6 350 84.0
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 2.8e-146 522.3 350 82.6
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.2e-133 480.3 335 76.7
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.1e-133 479.6 335 76.7
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 5.1e-132 474.9 351 75.8
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 1.4e-129 466.8 353 73.7
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 2.0e-128 463.0 353 74.5
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 2.2e-127 459.5 354 71.8
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 4.7e-117 425.2 330 68.8
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 1.1e-115 420.6 355 67.0
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.2e-112 410.6 329 68.7
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 1.0e-111 407.5 348 66.7
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 3.8e-111 405.6 325 70.8
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 3.8e-111 405.6 353 64.0
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 8.5e-111 404.4 347 66.6
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 8.5e-111 404.4 348 65.5
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 2.5e-110 402.9 271 80.1
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 4.2e-110 402.1 329 67.8
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 1.6e-109 400.2 348 64.9
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 3.6e-109 399.1 348 64.4
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.7e-109 398.7 347 65.4
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.0e-108 397.5 346 65.6
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.2e-108 395.2 330 66.4
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 5.2e-108 395.2 347 64.8
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 8.8e-108 394.4 350 64.6
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 1.5e-107 393.7 340 65.9
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.0e-107 393.3 350 64.6
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 4.4e-107 392.1 330 66.1
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.7e-107 391.7 330 66.1
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 7.5e-107 391.3 346 64.5
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 7.5e-107 391.3 330 66.7
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.3e-106 390.6 352 63.6
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 2.2e-106 389.8 331 65.3
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 2.8e-106 389.4 352 63.4
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 1.4e-105 387.1 345 63.8
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.8e-105 386.7 350 64.3
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 1.8e-105 386.7 331 66.5
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 5.3e-105 385.2 359 62.1
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.2e-104 384.0 333 67.6
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 2.7e-104 382.9 348 60.9
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 2.7e-104 382.9 329 66.0
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 3.5e-104 382.5 344 63.4
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.9e-104 381.7 339 64.9
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 3.8e-103 379.0 344 61.9
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.1e-102 377.5 347 63.4
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 7.2e-102 374.8 351 63.2
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 9.4e-102 374.4 331 65.6
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 1.2e-101 374.0 409 57.2
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 2.7e-101 372.9 343 62.1
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 3.6e-101 372.5 341 63.0
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 4.7e-101 372.1 412 55.3
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 8.0e-101 371.3 341 65.1
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 8.0e-101 371.3 348 61.5
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 2.6e-99 366.3 329 62.9
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 1.3e-98 364.0 347 62.5
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 3.7e-98 362.5 329 62.9
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 8.3e-98 361.3 332 62.3
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 1.4e-97 360.5 348 60.6
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 1.4e-97 360.5 348 61.8
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.4e-97 358.6 376 58.0
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.7e-96 356.3 329 62.6
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.9e-96 355.1 347 61.1
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 1.0e-95 354.4 347 58.2
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.3e-95 353.2 347 60.8
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 2.9e-95 352.8 348 61.5
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.5e-94 350.5 347 60.5
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 7.2e-94 348.2 348 59.2
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 7.2e-94 348.2 345 58.6
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 1.6e-93 347.1 348 58.0
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 2.8e-93 346.3 351 59.8
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.8e-93 346.3 352 58.5
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.8e-92 343.6 348 59.8
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 2.3e-92 343.2 342 59.9
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 6.8e-92 341.7 346 59.5
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 6.8e-92 341.7 333 60.4
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.5e-91 340.5 352 57.7
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 2.0e-91 340.1 336 62.2
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 2.6e-91 339.7 348 58.6
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 3.4e-91 339.3 349 58.2
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 3.4e-91 339.3 349 58.2
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 5.7e-91 338.6 347 58.2
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 7.5e-91 338.2 348 58.3
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 9.8e-91 337.8 332 61.4
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.7e-90 337.0 342 60.5
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 2.8e-90 336.3 346 58.7
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.7e-90 335.9 349 58.7
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.4e-89 334.0 352 59.9
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.8e-89 333.6 349 58.7
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 2.4e-89 333.2 348 59.2
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 7.0e-89 331.6 347 57.3
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 7.0e-89 331.6 351 57.0
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 9.2e-89 331.3 300 65.0
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.0e-88 330.1 347 57.9
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 2.0e-88 330.1 347 57.9
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 3.5e-88 329.3 398 52.5
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 5.9e-88 328.6 350 56.6
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 5.9e-88 328.6 347 56.8
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 5.9e-88 328.6 349 57.9
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 1.7e-87 327.0 346 58.1
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 5.0e-87 325.5 350 58.3
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 2.5e-86 323.2 343 61.2
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 3.3e-86 322.8 355 54.4
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.3e-86 322.4 349 57.0
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 7.3e-86 321.6 347 56.5
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 2.1e-85 320.1 329 57.4
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 3.6e-85 319.3 331 57.7
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 6.1e-85 318.5 330 57.3
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 8.0e-85 318.2 330 57.6
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 2.3e-84 316.6 335 57.6
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 5.2e-84 315.5 349 55.0
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 6.8e-84 315.1 347 56.5
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 6.8e-84 315.1 349 54.7
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 8.9e-84 314.7 347 56.5
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 8.3e-82 308.1 356 53.4
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.4e-81 307.4 340 55.9
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 1.4e-81 307.4 350 57.7
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 1.9e-81 307.0 344 55.8
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.9e-81 307.0 347 55.3
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 2.4e-81 306.6 328 56.1
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 2.4e-81 306.6 328 56.1
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 4.1e-81 305.8 248 68.1
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 4.1e-81 305.8 339 54.0
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 4.1e-81 305.8 347 52.4
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 7.0e-81 305.1 347 55.0
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 7.0e-81 305.1 347 55.0
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 4.6e-80 302.4 329 55.3
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.0e-79 301.2 357 50.7
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 2.3e-79 300.1 329 55.6
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 6.6e-79 298.5 354 52.0
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 6.6e-79 298.5 355 50.4
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.1e-78 297.7 347 51.3
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 3.6e-77 292.7 284 59.9
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 3.1e-76 289.7 348 49.7
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.4e-75 286.2 361 52.1
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 9.8e-75 284.6 356 50.3
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 1.3e-74 284.3 291 61.2
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 2.2e-74 283.5 346 50.6
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.3e-71 274.2 353 49.0
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 3.7e-66 256.1 248 62.5
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.3e-63 247.7 346 49.7
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.7e-63 247.3 207 67.1
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 3.3e-54 216.5 254 52.0
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.1e-49 201.4 341 43.1
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 3.7e-37 159.8 352 36.4
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 1.2e-35 154.8 326 38.3
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 8.4e-34 148.7 232 43.5
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 4.3e-30 136.3 392 31.9
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 9.0e-28 128.6 154 53.9
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.3e-22 109.8 156 46.2
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 6.1e-16 89.4 88 56.8
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 1.0e-15 88.6 243 30.9
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.7e-10 71.2 169 34.3
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 5.5e-09 66.2 62 59.7
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 1.5e-06 58.2 186 26.9
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 2.0e-06 57.8 357 25.5
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 5.7e-06 56.2 148 34.5


User provided reference genes

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