Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0003s0280 Medicago truncatula HOM05D000096 ORTHO05D014512 9.8e-72 273.5 149 100.0
Lalb_Chr02g0157071 Lupinus albus HOM05D000096 ORTHO05D000045 1.0e-20 104.0 55 74.5
TPR.G1782 Trifolium pratense HOM05D000096 ORTHO05D000045 3.6e-18 95.5 55 67.3
Psat5g170160 Pisum sativum HOM05D000096 ORTHO05D000045 4.8e-18 95.1 55 63.6
TPR.G8108 Trifolium pratense HOM05D000096 ORTHO05D000045 6.2e-18 94.7 97 47.4
TPR.G526 Trifolium pratense HOM05D000096 ORTHO05D000045 4.0e-17 92.0 55 67.3
Psat0s3648g0080 Pisum sativum HOM05D000096 ORTHO05D000045 5.3e-17 91.7 100 49.0
Psat5g017200 Pisum sativum HOM05D000096 ORTHO05D000045 1.2e-16 90.5 54 68.5
Psat4g139960 Pisum sativum HOM05D013709 ORTHO05D000045 1.5e-16 90.1 141 40.4
Medtr1g050372 Medicago truncatula HOM05D000096 ORTHO05D025225 2.6e-16 89.4 52 65.4
TPR.G21912 Trifolium pratense HOM05D000096 ORTHO05D000045 2.6e-16 89.4 141 39.7
TPR.G20413 Trifolium pratense HOM05D000096 ORTHO05D000045 3.4e-16 89.0 57 59.6
TPR.G34836 Trifolium pratense HOM05D000096 ORTHO05D000045 4.5e-16 88.6 140 38.6
TPR.G13231 Trifolium pratense HOM05D000096 ORTHO05D000045 2.9e-15 85.9 144 38.2
Psat7g217080 Pisum sativum HOM05D013709 ORTHO05D014512 3.8e-15 85.5 143 37.8
BraA09t38421Z Brassica rapa HOM05D000096 ORTHO05D000045 8.4e-15 84.3 54 63.0
Glyma.09G080200 Glycine max HOM05D000096 ORTHO05D000045 1.4e-14 83.6 96 43.8
C03p46920 Brassica napus HOM05D000096 ORTHO05D000045 3.2e-14 82.4 53 62.3
Psat5g292960 Pisum sativum HOM05D000096 ORTHO05D000045 3.2e-14 82.4 53 64.2
Psat5g031120 Pisum sativum HOM05D000096 ORTHO05D000045 4.2e-14 82.0 67 55.2
Glyma.09G061100 Glycine max HOM05D000096 ORTHO05D000045 7.1e-14 81.3 55 56.4
A02p32450 Brassica napus HOM05D000096 ORTHO05D000045 1.2e-13 80.5 62 54.8
C06p03040 Brassica napus HOM05D012107 ORTHO05D019900 1.2e-13 80.5 62 54.8
BolC4t24210H Brassica oleracea HOM05D012107 ORTHO05D014512 1.2e-13 80.5 51 62.7
Glyma.10G096000 Glycine max HOM05D000096 ORTHO05D000045 1.2e-13 80.5 53 56.6
C02p58080 Brassica napus HOM05D000096 ORTHO05D000045 1.6e-13 80.1 53 60.4
BolC9t54268H Brassica oleracea HOM05D000096 ORTHO05D018655 1.6e-13 80.1 53 60.4
Glyma.20G059700 Glycine max HOM05D000096 ORTHO05D000045 1.6e-13 80.1 56 51.8
Psat5g227080 Pisum sativum HOM05D040475 ORTHO05D000045 1.6e-13 80.1 102 43.1
A02p09270 Brassica napus HOM05D000096 ORTHO05D000045 2.7e-13 79.3 53 58.5
A07p41080 Brassica napus HOM05D000096 ORTHO05D000045 2.7e-13 79.3 55 56.4
C09p37720 Brassica napus HOM05D000096 ORTHO05D000045 2.7e-13 79.3 55 56.4
Psat6g064840 Pisum sativum HOM05D013709 ORTHO05D014512 2.7e-13 79.3 53 62.3
TPR.G15924 Trifolium pratense HOM05D000096 ORTHO05D000045 3.5e-13 79.0 142 43.0
C01p09670 Brassica napus HOM05D000096 ORTHO05D032959 4.6e-13 78.6 53 58.5
C09p36130 Brassica napus HOM05D000096 ORTHO05D018655 4.6e-13 78.6 53 58.5
BolC9t56452H Brassica oleracea HOM05D000096 ORTHO05D000045 4.6e-13 78.6 53 58.5
BolC1t04274H Brassica oleracea HOM05D008937 ORTHO05D014946 6.0e-13 78.2 53 58.5
C08p14690 Brassica napus HOM05D000096 ORTHO05D000045 7.9e-13 77.8 53 58.5
C03p27530 Brassica napus HOM05D000096 ORTHO05D000045 1.0e-12 77.4 53 58.5
AUR62017545 Chenopodium quinoa HOM05D000096 ORTHO05D000045 1.0e-12 77.4 60 55.0
Glyma.18G152100 Glycine max HOM05D000096 ORTHO05D000045 1.0e-12 77.4 54 55.6
A09p64020 Brassica napus HOM05D000096 ORTHO05D000045 1.3e-12 77.0 53 58.5
A03p68710 Brassica napus HOM05D000096 ORTHO05D000045 1.8e-12 76.6 53 56.6
C09p57380 Brassica napus HOM05D001407 ORTHO05D001314 1.8e-12 76.6 53 58.5
BolC7t41570H Brassica oleracea HOM05D000096 ORTHO05D020038 1.8e-12 76.6 53 58.5
BraA02t07815Z Brassica rapa HOM05D000096 ORTHO05D014946 1.8e-12 76.6 53 58.5
BraA04t16942Z Brassica rapa HOM05D000096 ORTHO05D000045 1.8e-12 76.6 53 56.6
C04p41010 Brassica napus HOM05D000096 ORTHO05D000045 2.3e-12 76.3 56 51.8
BolC4t25684H Brassica oleracea HOM05D000096 ORTHO05D000045 2.3e-12 76.3 56 51.8
A01p15630 Brassica napus HOM05D000096 ORTHO05D000045 3.0e-12 75.9 69 50.7
A05p20940 Brassica napus HOM05D000096 ORTHO05D000045 3.0e-12 75.9 53 56.6
C04p24460 Brassica napus HOM05D000096 ORTHO05D042345 3.0e-12 75.9 55 56.4
C09p53860 Brassica napus HOM05D000096 ORTHO05D000045 3.0e-12 75.9 53 54.7
BraA02t07162Z Brassica rapa HOM05D000096 ORTHO05D000045 3.0e-12 75.9 69 50.7
TPR.G5784 Trifolium pratense HOM05D000096 ORTHO05D000045 3.0e-12 75.9 67 50.7
A06p18360 Brassica napus HOM05D008937 ORTHO05D000045 3.9e-12 75.5 53 58.5
A07p12900 Brassica napus HOM05D000096 ORTHO05D000045 3.9e-12 75.5 53 56.6
BraA09t38075Z Brassica rapa HOM05D000096 ORTHO05D020038 3.9e-12 75.5 53 56.6
C02p36440 Brassica napus HOM05D000096 ORTHO05D000045 5.1e-12 75.1 69 49.3
C09p46800 Brassica napus HOM05D000096 ORTHO05D000045 5.1e-12 75.1 69 49.3
Nitab4.5_0003046g0040 Nicotiana tabacum HOM05D000096 ORTHO05D000045 5.1e-12 75.1 57 54.4
TPR.G20278 Trifolium pratense HOM05D000096 ORTHO05D000045 5.1e-12 75.1 49 59.2
C01p15660 Brassica napus HOM05D000096 ORTHO05D000045 6.7e-12 74.7 69 49.3
BolC1t01519H Brassica oleracea HOM05D000096 ORTHO05D000045 6.7e-12 74.7 69 49.3
BolC9t57838H Brassica oleracea HOM05D000096 ORTHO05D020038 6.7e-12 74.7 53 58.5
BolC2t07401H Brassica oleracea HOM05D011319 ORTHO05D031747 8.7e-12 74.3 53 56.6
BraA01t02638Z Brassica rapa HOM05D000096 ORTHO05D020038 8.7e-12 74.3 97 41.2
Nitab4.5_0004310g0040 Nicotiana tabacum HOM05D000096 ORTHO05D000045 1.5e-11 73.6 57 52.6
C09p38890 Brassica napus HOM05D000096 ORTHO05D000045 1.9e-11 73.2 53 58.5
BolC9t56755H Brassica oleracea HOM05D000353 ORTHO05D000174 1.9e-11 73.2 53 58.5
C06p01070 Brassica napus HOM05D000353 ORTHO05D000174 3.3e-11 72.4 53 54.7
Hma1.2p1_0146F.1_g065470 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 4.3e-11 72.0 51 52.9
TPR.G22667 Trifolium pratense HOM05D000096 ORTHO05D000045 4.3e-11 72.0 44 61.4
A03p68310 Brassica napus HOM05D000096 ORTHO05D000045 5.6e-11 71.6 97 40.2
C02p34870 Brassica napus HOM05D000096 ORTHO05D000045 5.6e-11 71.6 53 52.8
BolC7t45259H Brassica oleracea HOM05D000096 ORTHO05D009779 5.6e-11 71.6 55 54.5
TPR.G10928 Trifolium pratense HOM05D000096 ORTHO05D014512 5.6e-11 71.6 41 68.3
A02p01740 Brassica napus HOM05D000096 ORTHO05D000045 7.4e-11 71.2 53 54.7
A06p16970 Brassica napus HOM05D000353 ORTHO05D000174 7.4e-11 71.2 53 54.7
C04p06370 Brassica napus HOM05D000353 ORTHO05D000174 7.4e-11 71.2 53 54.7
BolC3t18759H Brassica oleracea HOM05D000353 ORTHO05D000174 7.4e-11 71.2 53 54.7
BraA06t24806Z Brassica rapa HOM05D000353 ORTHO05D000174 7.4e-11 71.2 53 54.7
A08p06590 Brassica napus HOM05D000096 ORTHO05D000045 9.6e-11 70.9 50 60.0
C02p26030 Brassica napus HOM05D000096 ORTHO05D000045 1.3e-10 70.5 53 54.7
C03p18670 Brassica napus HOM05D000096 ORTHO05D000045 1.6e-10 70.1 53 54.7
C06p37800 Brassica napus HOM05D000096 ORTHO05D000174 1.6e-10 70.1 54 51.9
C09p27110 Brassica napus HOM05D000096 ORTHO05D000045 1.6e-10 70.1 53 54.7
BolC3t16020H Brassica oleracea HOM05D000353 ORTHO05D000174 1.6e-10 70.1 51 54.9
BolC6t38882H Brassica oleracea HOM05D000353 ORTHO05D032358 1.6e-10 70.1 54 51.9
BolC8t47057H Brassica oleracea HOM05D000096 ORTHO05D000045 1.6e-10 70.1 53 54.7
BraA07t28121Z Brassica rapa HOM05D000096 ORTHO05D000045 1.6e-10 70.1 53 54.7
Lj6g0026524 Lotus japonicus HOM05D000096 ORTHO05D000045 1.6e-10 70.1 55 49.1
C07p07960 Brassica napus HOM05D000096 ORTHO05D000045 2.8e-10 69.3 53 54.7
BolC7t41213H Brassica oleracea HOM05D000096 ORTHO05D000045 2.8e-10 69.3 53 54.7
Psat6g078680 Pisum sativum HOM05D013709 ORTHO05D014512 4.8e-10 68.6 43 62.8
BraA08t32675Z Brassica rapa HOM05D000096 ORTHO05D000045 6.2e-10 68.2 47 59.6
C01p14580 Brassica napus HOM05D000096 ORTHO05D000045 1.1e-09 67.4 53 52.8
C03p57780 Brassica napus HOM05D000096 ORTHO05D000045 1.1e-09 67.4 53 50.9
C07p10860 Brassica napus HOM05D000096 ORTHO05D000045 1.1e-09 67.4 53 52.8
C07p10880 Brassica napus HOM05D000096 ORTHO05D000045 1.1e-09 67.4 53 52.8
Hma1.2p1_2176F.1_g316140 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 1.1e-09 67.4 51 49.0
C05p57160 Brassica napus HOM05D000096 ORTHO05D014489 1.4e-09 67.0 53 50.9
C06p10180 Brassica napus HOM05D000096 ORTHO05D000045 1.4e-09 67.0 53 50.9
BolC5t34379H Brassica oleracea HOM05D000096 ORTHO05D014489 1.4e-09 67.0 53 50.9
TWI77G0609 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 1.4e-09 67.0 49 51.0
A03p61630 Brassica napus HOM05D000096 ORTHO05D000045 1.8e-09 66.6 55 54.5
BolC5t33121H Brassica oleracea HOM05D000096 ORTHO05D000045 1.8e-09 66.6 47 57.4
BraA02t08215Z Brassica rapa HOM05D000096 ORTHO05D000045 1.8e-09 66.6 53 52.8
BraA04t17230Z Brassica rapa HOM05D000096 ORTHO05D000045 1.8e-09 66.6 55 54.5
C07p08260 Brassica napus HOM05D000096 ORTHO05D000045 2.4e-09 66.2 60 46.7
QL11p040805 Quercus lobata HOM05D000096 ORTHO05D000045 2.4e-09 66.2 47 53.2
BraA02t09043Z Brassica rapa HOM05D000096 ORTHO05D014489 3.1e-09 65.9 53 49.1
QL05p058503 Quercus lobata HOM05D000096 ORTHO05D000045 4.0e-09 65.5 51 49.0
A10p02610 Brassica napus HOM05D000096 ORTHO05D000045 5.3e-09 65.1 53 49.1
Carub.0013s0008 Capsella rubella HOM05D000096 ORTHO05D000045 5.3e-09 65.1 53 50.9
Ciclev10003309m.g Citrus clementina HOM05D000096 ORTHO05D000045 5.3e-09 65.1 51 45.1
Hma1.2p1_0839F.1_g226420 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 5.3e-09 65.1 51 52.9
QL01p044596 Quercus lobata HOM05D000096 ORTHO05D000045 5.3e-09 65.1 47 51.1
Medtr0048s0090 Medicago truncatula HOM05D000096 ORTHO05D000045 6.9e-09 64.7 73 42.5
Medtr8g039210 Medicago truncatula HOM05D000096 ORTHO05D000045 6.9e-09 64.7 56 50.0
Ah.04g157900 Amaranthus hybridus HOM05D000096 ORTHO05D000045 9.0e-09 64.3 57 50.9
Ciclev10033859m.g Citrus clementina HOM05D000096 ORTHO05D000045 9.0e-09 64.3 51 43.1
PGSC0003DMG400005511 Solanum tuberosum HOM05D000096 ORTHO05D000045 9.0e-09 64.3 50 50.0
SGA_v2.0_scaffold100G29549 Striga asiatica HOM05D000096 ORTHO05D000045 9.0e-09 64.3 53 47.2
ECA247G0444 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.2e-08 63.9 53 49.1
Glyma.10G108181 Glycine max HOM05D000096 ORTHO05D000045 1.5e-08 63.5 44 54.5
Hma1.2p1_0051F.1_g029450 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 1.5e-08 63.5 51 47.1
Hma1.2p1_0551F.1_g177510 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 1.5e-08 63.5 51 49.0
Medtr3g107750 Medicago truncatula HOM05D000096 ORTHO05D014512 1.5e-08 63.5 73 37.0
CANSAT01G0186 Cannabis sativa HOM05D000096 ORTHO05D000045 2.0e-08 63.2 51 43.1
C09p43400 Brassica napus HOM05D000096 ORTHO05D000045 2.6e-08 62.8 53 50.9
BolC9t56983H Brassica oleracea HOM05D023067 ORTHO05D000045 2.6e-08 62.8 54 50.0
BolC9t57224H Brassica oleracea HOM05D000096 ORTHO05D000045 2.6e-08 62.8 53 50.9
Lj4g0023169 Lotus japonicus HOM05D000096 ORTHO05D000045 2.6e-08 62.8 50 48.0
BolC5t32433H Brassica oleracea HOM05D000096 ORTHO05D000045 3.4e-08 62.4 53 49.1
HanXRQChr01g0011121 Helianthus annuus HOM05D000096 ORTHO05D000045 3.4e-08 62.4 53 45.3
TPR.G26513 Trifolium pratense HOM05D000096 ORTHO05D000045 3.4e-08 62.4 54 48.1
BolC1t03912H Brassica oleracea HOM05D000096 ORTHO05D000045 4.5e-08 62.0 54 51.9
Thecc.04G012000 Theobroma cacao HOM05D000096 ORTHO05D000045 4.5e-08 62.0 51 51.0
Hma1.2p1_0350F.1_g132640 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 5.8e-08 61.6 51 45.1
Os05g0523100 Oryza sativa ssp. japonica HOM05D000096 ORTHO05D000045 5.8e-08 61.6 51 47.1
Os11g0671600 Oryza sativa ssp. japonica HOM05D000096 ORTHO05D000045 5.8e-08 61.6 51 47.1
BolC3t16681H Brassica oleracea HOM05D012476 ORTHO05D000045 7.6e-08 61.2 54 46.3
Hma1.2p1_1047F.1_g251660 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 9.9e-08 60.8 51 45.1
Sp1g34290 Schrenkiella parvula HOM05D000096 ORTHO05D000045 9.9e-08 60.8 48 45.8
A01p09380 Brassica napus HOM05D000096 ORTHO05D000045 1.3e-07 60.5 54 50.0
C01p13760 Brassica napus HOM05D000096 ORTHO05D000045 1.3e-07 60.5 54 50.0
ECA248G1544 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.3e-07 60.5 53 47.2
Hma1.2p1_2583F.1_g324860 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 1.3e-07 60.5 51 45.1
ECA232G4551 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.7e-07 60.1 53 47.2
ECA234G3439 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.7e-07 60.1 53 47.2
Lj4g0021531 Lotus japonicus HOM05D000096 ORTHO05D000045 1.7e-07 60.1 43 51.2
Thecc.04G155200 Theobroma cacao HOM05D000096 ORTHO05D000045 1.7e-07 60.1 51 51.0
TPR.G9630 Trifolium pratense HOM05D000096 ORTHO05D000045 1.7e-07 60.1 47 48.9
Lalb_Chr01g0015661 Lupinus albus HOM05D000096 ORTHO05D000045 2.2e-07 59.7 36 63.9
C03p56990 Brassica napus HOM05D000096 ORTHO05D000045 3.8e-07 58.9 54 46.3
BolC3t17976H Brassica oleracea HOM05D000096 ORTHO05D000045 3.8e-07 58.9 54 46.3
DCAR_025591 Daucus carota HOM05D033625 ORTHO05D025225 3.8e-07 58.9 66 37.9
TPR.G27278 Trifolium pratense HOM05D000096 ORTHO05D000045 3.8e-07 58.9 51 49.0
SpUn0005_0190 Schrenkiella parvula HOM05D000096 ORTHO05D000045 4.9e-07 58.5 48 43.8
PSO017G6700 Papaver somniferum HOM05D000096 ORTHO05D000045 6.4e-07 58.2 51 47.1
C07p08220 Brassica napus HOM05D000096 ORTHO05D000045 8.4e-07 57.8 60 43.3
BolC5t30358H Brassica oleracea HOM05D000096 ORTHO05D000045 8.4e-07 57.8 54 50.0
Lj1g0008994 Lotus japonicus HOM05D000096 ORTHO05D000045 8.4e-07 57.8 43 48.8
TWI53G1347 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 8.4e-07 57.8 53 43.4
Aqoxy1G02586 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 1.1e-06 57.4 51 41.2
COL.COLO4_33117 Corchorus olitorius HOM05D000096 ORTHO05D000045 1.4e-06 57.0 50 42.0
Glyma.15G190000 Glycine max HOM05D000096 ORTHO05D000045 1.4e-06 57.0 36 58.3
PSO832G4366 Papaver somniferum HOM05D000096 ORTHO05D000045 1.4e-06 57.0 43 48.8
QL09p000096 Quercus lobata HOM05D000096 ORTHO05D000045 1.4e-06 57.0 51 45.1
TWI23G0742 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 1.4e-06 57.0 51 41.2
Nitab4.5_0026219g0010 Nicotiana tabacum HOM05D000096 ORTHO05D000045 1.9e-06 56.6 53 45.3
Psat0ss28572g0040 Pisum sativum HOM05D000096 ORTHO05D000045 1.9e-06 56.6 52 48.1
TWI53G1883 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 1.9e-06 56.6 51 45.1
A04p12910 Brassica napus HOM05D000096 ORTHO05D000045 2.4e-06 56.2 37 56.8
ECA232G0493 Erigeron canadensis HOM05D000096 ORTHO05D014619 2.4e-06 56.2 43 51.2
ECA238G1832 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.4e-06 56.2 53 45.3
Nitab4.5_0000992g0120 Nicotiana tabacum HOM05D000096 ORTHO05D000045 2.4e-06 56.2 53 45.3
PSO170G1256 Papaver somniferum HOM05D000096 ORTHO05D000045 2.4e-06 56.2 46 58.7
TPR.G9555 Trifolium pratense HOM05D000096 ORTHO05D000045 2.4e-06 56.2 53 45.3
TWI38G2100 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 3.2e-06 55.8 51 45.1
TWI75G0251 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 4.2e-06 55.5 51 39.2
PSO764G0164 Papaver somniferum HOM05D000096 ORTHO05D000045 5.5e-06 55.1 52 51.9
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 5.5e-06 55.1 53 45.3
BraA02t06573Z Brassica rapa HOM05D000096 ORTHO05D000045 7.1e-06 54.7 67 37.3
PSO210G7736 Papaver somniferum HOM05D000096 ORTHO05D000045 7.1e-06 54.7 51 52.9
PSO675G3398 Papaver somniferum HOM05D000096 ORTHO05D000045 7.1e-06 54.7 67 35.8
Psat6g191280 Pisum sativum HOM05D000096 ORTHO05D000045 7.1e-06 54.7 45 51.1
TPR.G14206 Trifolium pratense HOM05D000096 ORTHO05D000045 7.1e-06 54.7 153 33.3
TWI73G0764 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 7.1e-06 54.7 49 40.8
COL.COLO4_14941 Corchorus olitorius HOM05D000096 ORTHO05D000045 9.3e-06 54.3 51 41.2
COL.COLO4_16671 Corchorus olitorius HOM05D000096 ORTHO05D000045 9.3e-06 54.3 51 39.2
DCAR_016011 Daucus carota HOM05D033625 ORTHO05D025225 9.3e-06 54.3 50 44.0
HanXRQChr02g0054101 Helianthus annuus HOM05D000096 ORTHO05D000045 9.3e-06 54.3 56 41.1


User provided reference genes

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