Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MapolyY_B0022 Marchantia polymorpha HOM05D001372 ORTHO05D002010 2.4e-63 245.4 123 100.0
Pp3c20_17219 Physcomitrium patens HOM05D001372 ORTHO05D002010 7.2e-12 74.3 109 41.3
Nn6g34631 Nelumbo nucifera HOM05D001372 ORTHO05D002010 7.4e-09 64.3 88 42.0
HanXRQChr13g0398491 Helianthus annuus HOM05D001372 ORTHO05D002010 1.3e-08 63.5 88 40.9
Lsat_1_v5_gn_6_34861 Lactuca sativa HOM05D001372 ORTHO05D002010 1.3e-08 63.5 85 42.4
QL07p027331 Quercus lobata HOM05D001372 ORTHO05D002010 1.3e-08 63.5 88 42.0
CSS0026492 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D002010 1.7e-08 63.2 83 41.0
CSS0041191 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D002010 1.7e-08 63.2 88 40.9
CSS0049334 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D002010 1.7e-08 63.2 88 40.9
CiPaw.13G128400 Carya illinoinensis HOM05D001372 ORTHO05D002010 1.7e-08 63.2 88 42.0
Duzib170G0546 Durio zibethinus HOM05D001372 ORTHO05D002010 1.7e-08 63.2 89 41.6
Hma1.2p1_0064F.1_g034560 Hydrangea macrophylla HOM05D001372 ORTHO05D002010 1.7e-08 63.2 89 39.3
Lsat_1_v5_gn_1_58400 Lactuca sativa HOM05D001372 ORTHO05D002010 2.2e-08 62.8 88 40.9
SMO145G0133 Selaginella moellendorffii HOM05D001372 ORTHO05D002010 2.2e-08 62.8 91 37.4
Migut.B00295 Erythranthe guttata HOM05D001372 ORTHO05D002010 4.8e-08 61.6 84 39.3
Potri.016G068000 Populus trichocarpa HOM05D001372 ORTHO05D002010 4.8e-08 61.6 89 40.4
SGA_v2.0_scaffold41G15767 Striga asiatica HOM05D001372 ORTHO05D002010 4.8e-08 61.6 95 37.9
arahy.Tifrunner.gnm1.ann1.5J0CRS Arachis hypogaea HOM05D001372 ORTHO05D002010 6.3e-08 61.2 99 33.3
MBI05_g33249_MAGBIO Magnolia biondii HOM05D001372 ORTHO05D002010 6.3e-08 61.2 87 40.2
Sc07g0006400 Simmondsia chinensis HOM05D001372 ORTHO05D002010 6.3e-08 61.2 89 41.6
SGA_v2.0_scaffold32G13130 Striga asiatica HOM05D001372 ORTHO05D002010 6.3e-08 61.2 84 40.5
Cc06_g06740 Coffea canephora HOM05D001372 ORTHO05D002010 8.2e-08 60.8 87 40.2
Duzib128G1643 Durio zibethinus HOM05D001372 ORTHO05D002010 1.1e-07 60.5 99 38.4
Gohir.A04G055300 Gossypium hirsutum HOM05D001372 ORTHO05D002010 1.1e-07 60.5 89 40.4
HanXRQChr11g0347161 Helianthus annuus HOM05D001372 ORTHO05D002010 1.1e-07 60.5 88 40.9
Hma1.2p1_1353F.1_g277750 Hydrangea macrophylla HOM05D001372 ORTHO05D002010 1.1e-07 60.5 84 38.1
Hma1.2p1_1527F.1_g289036 Hydrangea macrophylla HOM05D001372 ORTHO05D002010 1.1e-07 60.5 84 38.1
PSO339G0170 Papaver somniferum HOM05D001372 ORTHO05D002010 1.1e-07 60.5 90 38.9
Sabra16G0069100 Salix brachista HOM05D001372 ORTHO05D002010 1.1e-07 60.5 89 41.6
TAR369G1041 Trochodendron aralioides HOM05D001372 ORTHO05D002010 1.1e-07 60.5 89 39.3
HPP92_015642 Vanilla planifolia HOM05D001372 ORTHO05D002010 1.1e-07 60.5 89 39.3
CiPaw.10G019100 Carya illinoinensis HOM05D001372 ORTHO05D002010 1.4e-07 60.1 89 40.4
Cc02_g18280 Coffea canephora HOM05D001372 ORTHO05D002010 1.4e-07 60.1 96 35.4
Eucgr.K01919 Eucalyptus grandis HOM05D001372 ORTHO05D002010 1.4e-07 60.1 89 40.4
PSO384G3059 Papaver somniferum HOM05D001372 ORTHO05D002010 1.4e-07 60.1 90 38.9
Peaxi162Scf00083g01925 Petunia axillaris HOM05D001372 ORTHO05D002010 1.4e-07 60.1 88 39.8
Potri.006G201600 Populus trichocarpa HOM05D001372 ORTHO05D002010 1.4e-07 60.1 89 41.6
Rhsim11G0170200 Rhododendron simsii HOM05D001372 ORTHO05D002010 1.4e-07 60.1 84 39.3
THA.LOC104810937 Tarenaya hassleriana HOM05D001372 ORTHO05D002010 1.4e-07 60.1 88 42.0
Thecc.05G107300 Theobroma cacao HOM05D001372 ORTHO05D002010 1.4e-07 60.1 89 40.4
BcaB01g01196 Brassica carinata HOM05D001372 ORTHO05D002010 1.8e-07 59.7 88 40.9
A06p22170 Brassica napus HOM05D001372 ORTHO05D002010 1.8e-07 59.7 88 40.9
BraA06t25307Z Brassica rapa HOM05D001372 ORTHO05D002010 1.8e-07 59.7 88 40.9
CSS0016799 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D002010 1.8e-07 59.7 84 38.1
Cpa.g.sc1467.4 Carica papaya HOM05D001372 ORTHO05D002010 1.8e-07 59.7 89 41.6
Thhalv10010660m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 1.8e-07 59.7 88 40.9
Lalb_Chr03g0028471 Lupinus albus HOM05D001372 ORTHO05D002010 1.8e-07 59.7 91 40.7
Manes.09G043700 Manihot esculenta HOM05D001372 ORTHO05D002010 1.8e-07 59.7 89 40.4
QL01p019344 Quercus lobata HOM05D001372 ORTHO05D002010 1.8e-07 59.7 88 39.8
AUR62030722 Chenopodium quinoa HOM05D001372 ORTHO05D002010 2.4e-07 59.3 88 39.8
COL.COLO4_11738 Corchorus olitorius HOM05D001372 ORTHO05D002010 2.4e-07 59.3 85 40.0
SalBow1G2055 Salvia bowleyana HOM05D001372 ORTHO05D002010 2.4e-07 59.3 88 38.6
SalBow1G5216 Salvia bowleyana HOM05D001372 ORTHO05D002010 2.4e-07 59.3 88 38.6
SGA_v2.0_scaffold184G40033 Striga asiatica HOM05D001372 ORTHO05D002010 2.4e-07 59.3 87 39.1
unitig_21.g20760 Utricularia gibba HOM05D001372 ORTHO05D002010 2.4e-07 59.3 96 34.4
vmacro02166 Vaccinium macrocarpon HOM05D001372 ORTHO05D002010 2.4e-07 59.3 96 35.4
Atru.chr8.1318 Acer truncatum HOM05D001372 ORTHO05D002010 3.1e-07 58.9 89 39.3
Aqoxy6G00927 Aquilegia oxysepala HOM05D001372 ORTHO05D002010 3.1e-07 58.9 92 37.0
arahy.Tifrunner.gnm1.ann1.5W3I9L Arachis hypogaea HOM05D001372 ORTHO05D002010 3.1e-07 58.9 93 34.4
Ciclev10012616m.g Citrus clementina HOM05D001372 ORTHO05D002010 3.1e-07 58.9 88 37.5
MELO3C014523.2 Cucumis melo HOM05D001372 ORTHO05D002010 3.1e-07 58.9 89 39.3
FvH4_6g20620 Fragaria vesca HOM05D001372 ORTHO05D002010 3.1e-07 58.9 97 39.2
FAN02G2542 Fragaria x ananassa HOM05D001372 ORTHO05D002010 3.1e-07 58.9 97 39.2
FAN05G3908 Fragaria x ananassa HOM05D001372 ORTHO05D002010 3.1e-07 58.9 97 39.2
FAN09G0382 Fragaria x ananassa HOM05D001372 ORTHO05D002010 3.1e-07 58.9 97 39.2
FAN14G5175 Fragaria x ananassa HOM05D001372 ORTHO05D002010 3.1e-07 58.9 97 39.2
MD14G1041500 Malus domestica HOM05D001372 ORTHO05D002010 3.1e-07 58.9 89 39.3
EL10Ac5g11848 Beta vulgaris HOM05D001372 ORTHO05D002010 4.1e-07 58.5 89 40.4
Eucgr.A02567 Eucalyptus grandis HOM05D001372 ORTHO05D002010 4.1e-07 58.5 89 39.3
FAN05G4645 Fragaria x ananassa HOM05D001372 ORTHO05D002010 4.1e-07 58.5 97 38.1
unitig_22.g5152 Utricularia gibba HOM05D001372 ORTHO05D002010 4.1e-07 58.5 94 34.0
Actinidia00475 Actinidia chinensis HOM05D001372 ORTHO05D002010 5.3e-07 58.2 84 36.9
AL5G22180 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 5.3e-07 58.2 88 39.8
Duzib168G1050 Durio zibethinus HOM05D001372 ORTHO05D002010 5.3e-07 58.2 87 40.2
Oeu063074.1 Olea europaea HOM05D001372 ORTHO05D002010 5.3e-07 58.2 90 37.8
PSO675G8131 Papaver somniferum HOM05D001372 ORTHO05D002010 5.3e-07 58.2 97 37.1
Prupe.7G092600 Prunus persica HOM05D001372 ORTHO05D002010 5.3e-07 58.2 89 40.4
Thecc.09G270700 Theobroma cacao HOM05D001372 ORTHO05D002010 5.3e-07 58.2 88 39.8
vmacro07489 Vaccinium macrocarpon HOM05D001372 ORTHO05D002010 5.3e-07 58.2 88 38.6
VMungo1127G0583 Vigna mungo HOM05D001372 ORTHO05D002010 5.3e-07 58.2 87 40.2
AL3G23370 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 7.0e-07 57.8 89 39.3
A03p37290 Brassica napus HOM05D001372 ORTHO05D002010 7.0e-07 57.8 89 38.2
BraA03t12889Z Brassica rapa HOM05D001372 ORTHO05D002010 7.0e-07 57.8 89 38.2
DCAR_020688 Daucus carota HOM05D001372 ORTHO05D002010 7.0e-07 57.8 88 39.8
Dinv12354 Davidia involucrata HOM05D001372 ORTHO05D002010 7.0e-07 57.8 87 39.1
Gohir.A01G200400 Gossypium hirsutum HOM05D001372 ORTHO05D002010 7.0e-07 57.8 87 39.1
Gohir.D01G190500 Gossypium hirsutum HOM05D001372 ORTHO05D002010 7.0e-07 57.8 87 39.1
Gorai.002G234200 Gossypium raimondii HOM05D001372 ORTHO05D002010 7.0e-07 57.8 87 39.1
Nitab4.5_0000220g0100 Nicotiana tabacum HOM05D001372 ORTHO05D002010 7.0e-07 57.8 87 37.9
PGR004G1510 Punica granatum HOM05D001372 ORTHO05D002010 7.0e-07 57.8 89 39.3
Zm00001eb050310 Zea mays HOM05D001372 ORTHO05D002010 7.0e-07 57.8 89 39.3
AT3G11800 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 9.1e-07 57.4 89 39.3
BcaC01g02075 Brassica carinata HOM05D001372 ORTHO05D002010 9.1e-07 57.4 88 39.8
C03p68810 Brassica napus HOM05D001372 ORTHO05D002010 9.1e-07 57.4 88 39.8
BolC3t19139H Brassica oleracea HOM05D001372 ORTHO05D002010 9.1e-07 57.4 88 39.8
CARHR152930 Cardamine hirsuta HOM05D001372 ORTHO05D002010 9.1e-07 57.4 88 39.8
Cfa020057 Carpinus fangiana HOM05D001372 ORTHO05D002010 9.1e-07 57.4 88 38.6
MD03G1158900 Malus domestica HOM05D001372 ORTHO05D002010 9.1e-07 57.4 88 39.8
RcHm_v2.0_Chr3g0476431 Rosa chinensis HOM05D001372 ORTHO05D002010 9.1e-07 57.4 87 40.2
GSVIVG01022561001 Vitis vinifera HOM05D001372 ORTHO05D002010 9.1e-07 57.4 90 37.8
Zm00001eb218600 Zea mays HOM05D001372 ORTHO05D002010 9.1e-07 57.4 89 39.3
Aa31LG4G13690 Aethionema arabicum HOM05D001372 ORTHO05D002010 1.2e-06 57.0 88 39.8
Aa31LG8G13430 Aethionema arabicum HOM05D001372 ORTHO05D002010 1.2e-06 57.0 93 35.5
AT3G44150 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 1.2e-06 57.0 88 38.6
arahy.Tifrunner.gnm1.ann1.BWES1P Arachis hypogaea HOM05D001372 ORTHO05D002010 1.2e-06 57.0 87 40.2
arahy.Tifrunner.gnm1.ann1.U3RKJQ Arachis hypogaea HOM05D001372 ORTHO05D002010 1.2e-06 57.0 87 40.2
BcaC05g29329 Brassica carinata HOM05D001372 ORTHO05D002010 1.2e-06 57.0 89 39.3
A05p37550 Brassica napus HOM05D001372 ORTHO05D002010 1.2e-06 57.0 89 39.3
C03p45150 Brassica napus HOM05D001372 ORTHO05D002010 1.2e-06 57.0 88 38.6
C05p56110 Brassica napus HOM05D001372 ORTHO05D002010 1.2e-06 57.0 89 39.3
BolC3t16779H Brassica oleracea HOM05D001372 ORTHO05D002010 1.2e-06 57.0 88 38.6
BolC5t34278H Brassica oleracea HOM05D001372 ORTHO05D002010 1.2e-06 57.0 89 39.3
BraA05t22553Z Brassica rapa HOM05D001372 ORTHO05D002010 1.2e-06 57.0 89 39.3
Lj1A1057T27 Lonicera japonica HOM05D001372 ORTHO05D002010 1.2e-06 57.0 87 35.6
Oeu007243.1 Olea europaea HOM05D001372 ORTHO05D002010 1.2e-06 57.0 96 34.4
Oeu035656.1 Olea europaea HOM05D001372 ORTHO05D002010 1.2e-06 57.0 88 37.5
PSO541G4228 Papaver somniferum HOM05D001372 ORTHO05D002010 1.2e-06 57.0 97 36.1
PGR142G2315 Punica granatum HOM05D001372 ORTHO05D002010 1.2e-06 57.0 89 38.2
TWI53G1576 Tripterygium wilfordii HOM05D001372 ORTHO05D002010 1.2e-06 57.0 88 38.6
TAR628G0822 Trochodendron aralioides HOM05D001372 ORTHO05D002010 1.2e-06 57.0 83 41.0
BcaB06g25583 Brassica carinata HOM05D001372 ORTHO05D002010 1.5e-06 56.6 89 39.3
CANSAT64G0882 Cannabis sativa HOM05D001372 ORTHO05D002010 1.5e-06 56.6 89 38.2
Carub.0003s1113 Capsella rubella HOM05D001372 ORTHO05D002010 1.5e-06 56.6 89 39.3
COL.COLO4_25401 Corchorus olitorius HOM05D001372 ORTHO05D002010 1.5e-06 56.6 87 39.1
CsaV3_6G038610 Cucumis sativus L. HOM05D001372 ORTHO05D002010 1.5e-06 56.6 89 38.2
Duzib248G0815 Durio zibethinus HOM05D001372 ORTHO05D002010 1.5e-06 56.6 85 38.8
Nitab4.5_0002165g0050 Nicotiana tabacum HOM05D001372 ORTHO05D002010 1.5e-06 56.6 87 36.8
PSO339G4941 Papaver somniferum HOM05D001372 ORTHO05D002010 1.5e-06 56.6 97 35.1
PSO384G1516 Papaver somniferum HOM05D001372 ORTHO05D002010 1.5e-06 56.6 97 35.1
Thecc.02G093300 Theobroma cacao HOM05D001372 ORTHO05D002010 1.5e-06 56.6 85 38.8
Actinidia37760 Actinidia chinensis HOM05D001372 ORTHO05D002010 2.0e-06 56.2 84 39.3
arahy.Tifrunner.gnm1.ann1.MVV0D6 Arachis hypogaea HOM05D001372 ORTHO05D002010 2.0e-06 56.2 84 39.3
Carub.0005s0987 Capsella rubella HOM05D001372 ORTHO05D002010 2.0e-06 56.2 88 38.6
ClCG02G022470 Citrullus lanatus HOM05D001372 ORTHO05D002010 2.0e-06 56.2 89 38.2
Glyma.12G095500 Glycine max HOM05D001372 ORTHO05D002010 2.0e-06 56.2 87 37.9
Lj5g0025545 Lotus japonicus HOM05D001372 ORTHO05D002010 2.0e-06 56.2 84 39.3
Phvul.011G099900 Phaseolus vulgaris HOM05D001372 ORTHO05D002010 2.0e-06 56.2 87 39.1
Pp3c27_2380 Physcomitrium patens HOM05D001372 ORTHO05D002010 2.0e-06 56.2 96 31.2
Sp5g17210 Schrenkiella parvula HOM05D001372 ORTHO05D002010 2.0e-06 56.2 88 39.8
TWI74G0309 Tripterygium wilfordii HOM05D001372 ORTHO05D002010 2.0e-06 56.2 88 38.6
arahy.Tifrunner.gnm1.ann1.N78PK4 Arachis hypogaea HOM05D001372 ORTHO05D002010 2.6e-06 55.8 84 39.3
BcaB04g18661 Brassica carinata HOM05D001372 ORTHO05D002010 2.6e-06 55.8 88 38.6
CAN.G674.9 Capsicum annuum HOM05D001372 ORTHO05D002010 2.6e-06 55.8 87 36.8
Cfa010190 Carpinus fangiana HOM05D001372 ORTHO05D002010 2.6e-06 55.8 90 37.8
Aa31LG3G5280 Aethionema arabicum HOM05D001372 ORTHO05D002010 3.4e-06 55.5 88 38.6
Ah.12g059330 Amaranthus hybridus HOM05D001372 ORTHO05D002010 3.4e-06 55.5 87 39.1
ATR0665G411 Amborella trichopoda HOM05D001372 ORTHO05D002010 3.4e-06 55.5 89 38.2
Aqoxy1G00633 Aquilegia oxysepala HOM05D001372 ORTHO05D002010 3.4e-06 55.5 92 33.7
CARHR086350 Cardamine hirsuta HOM05D001372 ORTHO05D002010 3.4e-06 55.5 89 38.2
Haze_20141 Corylus avellana HOM05D001372 ORTHO05D002010 3.4e-06 55.5 92 38.0
Manes.08G035200 Manihot esculenta HOM05D001372 ORTHO05D002010 3.4e-06 55.5 89 38.2
Sopen10g032340 Solanum pennellii HOM05D001372 ORTHO05D002010 3.4e-06 55.5 87 36.8
VMungo0720G1842 Vigna mungo HOM05D001372 ORTHO05D002010 3.4e-06 55.5 84 39.3
Glyma.10G082900 Glycine max HOM05D001372 ORTHO05D002010 4.5e-06 55.1 84 38.1
MD11G1174300 Malus domestica HOM05D001372 ORTHO05D002010 4.5e-06 55.1 87 39.1
Nitab4.5_0002543g0020 Nicotiana tabacum HOM05D001372 ORTHO05D002010 4.5e-06 55.1 96 34.4
Psat6g129200 Pisum sativum HOM05D001372 ORTHO05D002010 4.5e-06 55.1 99 35.4
BcaB06g25576 Brassica carinata HOM05D001372 ORTHO05D002010 5.9e-06 54.7 51 49.0
BcaB08g34617 Brassica carinata HOM05D001372 ORTHO05D002010 5.9e-06 54.7 82 36.6
BcaC01g03047 Brassica carinata HOM05D001372 ORTHO05D002010 5.9e-06 54.7 82 37.8
BcaC01g04085 Brassica carinata HOM05D001372 ORTHO05D002010 5.9e-06 54.7 88 37.5
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 5.9e-06 54.7 82 37.8
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 5.9e-06 54.7 82 37.8
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 5.9e-06 54.7 82 37.8
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 5.9e-06 54.7 82 37.8
CAN.G675.7 Capsicum annuum HOM05D001372 ORTHO05D002010 5.9e-06 54.7 96 33.3
Eucgr.G01513 Eucalyptus grandis HOM05D001372 ORTHO05D002010 5.9e-06 54.7 84 36.9
Thhalv10021362m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 5.9e-06 54.7 89 38.2
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 5.9e-06 54.7 94 34.0
Glyma.02G194800 Glycine max HOM05D001372 ORTHO05D002010 5.9e-06 54.7 84 38.1
Lalb_Chr02g0154351 Lupinus albus HOM05D001372 ORTHO05D002010 5.9e-06 54.7 89 38.2
Nitab4.5_0000473g0050 Nicotiana tabacum HOM05D001372 ORTHO05D002010 5.9e-06 54.7 83 37.3
Nitab4.5_0005466g0030 Nicotiana tabacum HOM05D001372 ORTHO05D002010 5.9e-06 54.7 96 34.4
Peaxi162Scf00003g02039 Petunia axillaris HOM05D001372 ORTHO05D002010 5.9e-06 54.7 96 33.3
Sp3g10020 Schrenkiella parvula HOM05D001372 ORTHO05D002010 5.9e-06 54.7 90 38.9
SMO164G0235 Selaginella moellendorffii HOM05D001372 ORTHO05D002010 5.9e-06 54.7 76 40.8
Sc01g0005430 Simmondsia chinensis HOM05D001372 ORTHO05D002010 5.9e-06 54.7 89 37.1
SalBow6G1872 Salvia bowleyana HOM05D001372 ORTHO05D002010 7.7e-06 54.3 70 41.4
Sp3g29220 Schrenkiella parvula HOM05D001372 ORTHO05D002010 7.7e-06 54.3 94 34.0
TPR.G25335 Trifolium pratense HOM05D001372 ORTHO05D002010 7.7e-06 54.3 84 39.3


User provided reference genes

Program Settings