Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly4207s0001 Marchantia polymorpha HOM05D004658 ORTHO05D253917 5.0e-60 234.2 114 100.0
Mapoly0032s0164 Marchantia polymorpha HOM05D004658 ORTHO05D005927 7.3e-19 97.4 47 95.7
Mapoly0049s0016 Marchantia polymorpha HOM05D004658 ORTHO05D005927 1.8e-17 92.8 50 86.0
Pp3c25_7720 Physcomitrium patens HOM05D004658 ORTHO05D005927 2.6e-16 89.0 47 87.2
Pp3c6_17840 Physcomitrium patens HOM05D004658 ORTHO05D005927 3.4e-16 88.6 47 87.2
Aa31LG1G28690 Aethionema arabicum HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
AT2G47390 Arabidopsis thaliana HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
BcaC02g06972 Brassica carinata HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
C04p00470 Brassica napus HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
C04p72760 Brassica napus HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
CARHR142780 Cardamine hirsuta HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
Glyma.03G219500 Glycine max HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
Potri.002G196000 Populus trichocarpa HOM05D004658 ORTHO05D005927 9.9e-16 87.0 64 68.8
Sp4g29330 Schrenkiella parvula HOM05D004658 ORTHO05D005927 9.9e-16 87.0 47 85.1
AagrBONN_evm.TU.Sc2ySwM_228.2732 Anthoceros agrestis HOM05D004658 ORTHO05D005927 1.7e-15 86.3 47 85.1
Pp3c23_15570 Physcomitrium patens HOM05D004658 ORTHO05D005927 2.9e-15 85.5 47 83.0
Aqoxy2G02766 Aquilegia oxysepala HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
MSTRG.18101 Avicennia marina HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
CSS0014890 Camellia sinensis var. sinensis HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
CANSAT11G0445 Cannabis sativa HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Glyma.19G216400 Glycine max HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Gohir.A12G124600 Gossypium hirsutum HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Gohir.D12G128500 Gossypium hirsutum HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Gorai.008G139300 Gossypium raimondii HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
MBI18_g17316_MAGBIO Magnolia biondii HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Nn3g21693 Nelumbo nucifera HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Sed0011993 Sechium edule HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Thecc.01G313700 Theobroma cacao HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
TAR362G0927 Trochodendron aralioides HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
vmacro02405 Vaccinium macrocarpon HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
VMungo1383G2746 Vigna mungo HOM05D004658 ORTHO05D005927 3.8e-15 85.1 47 83.0
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 4.9e-15 84.7 47 83.0
Phvul.001G213000 Phaseolus vulgaris HOM05D004658 ORTHO05D005927 4.9e-15 84.7 47 83.0
Ah.02g112260 Amaranthus hybridus HOM05D004658 ORTHO05D005927 6.4e-15 84.3 47 80.9
FvH4_5g39170 Fragaria vesca HOM05D004658 ORTHO05D005927 6.4e-15 84.3 47 80.9
FAN04G3181 Fragaria x ananassa HOM05D004658 ORTHO05D005927 6.4e-15 84.3 47 80.9
FAN08G2138 Fragaria x ananassa HOM05D004658 ORTHO05D005927 6.4e-15 84.3 47 80.9
FAN18G2042 Fragaria x ananassa HOM05D004658 ORTHO05D005927 6.4e-15 84.3 47 80.9
Sc17g0000440 Simmondsia chinensis HOM05D004658 ORTHO05D005927 6.4e-15 84.3 47 80.9
Actinidia17899 Actinidia chinensis HOM05D004658 ORTHO05D005927 8.4e-15 84.0 47 80.9
MELO3C015923.2 Cucumis melo HOM05D004658 ORTHO05D005927 8.4e-15 84.0 47 83.0
Duzib133G0239 Durio zibethinus HOM05D004658 ORTHO05D005927 8.4e-15 84.0 47 83.0
Lj1g0019327 Lotus japonicus HOM05D004658 ORTHO05D005927 8.4e-15 84.0 47 80.9
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 8.4e-15 84.0 47 80.9
Potri.014G120600 Populus trichocarpa HOM05D004658 ORTHO05D005927 1.1e-14 83.6 47 80.9
Cpa.g.sc18.45 Carica papaya HOM05D004658 ORTHO05D005927 1.4e-14 83.2 47 80.9
Migut.D00082 Erythranthe guttata HOM05D004658 ORTHO05D005927 1.4e-14 83.2 47 80.9
RcHm_v2.0_Chr7g0241201 Rosa chinensis HOM05D004658 ORTHO05D005927 1.4e-14 83.2 47 78.7
RcHm_v2.0_Chr7g0241431 Rosa chinensis HOM05D004658 ORTHO05D005927 1.4e-14 83.2 47 78.7
THA.LOC104817457 Tarenaya hassleriana HOM05D004658 ORTHO05D005927 1.4e-14 83.2 47 80.9
TWI18G0165 Tripterygium wilfordii HOM05D004658 ORTHO05D005927 1.4e-14 83.2 47 80.9
GSVIVG01028121001 Vitis vinifera HOM05D004658 ORTHO05D005927 1.4e-14 83.2 47 80.9
CDE02G1789 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 1.9e-14 82.8 47 78.7
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 1.9e-14 82.8 47 78.7
CiPaw.07G117600 Carya illinoinensis HOM05D004658 ORTHO05D005927 2.4e-14 82.4 47 80.9
CsaV3_7G029970 Cucumis sativus L. HOM05D004658 ORTHO05D005927 2.4e-14 82.4 47 80.9
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 2.4e-14 82.4 47 76.6
Solyc01g079450.3 Solanum lycopersicum HOM05D004658 ORTHO05D005927 2.4e-14 82.4 47 76.6
AUR62011802 Chenopodium quinoa HOM05D004658 ORTHO05D005927 3.2e-14 82.0 47 78.7
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 3.2e-14 82.0 47 78.7
Duzib138G1936 Durio zibethinus HOM05D004658 ORTHO05D005927 3.2e-14 82.0 47 80.9
Eucgr.H01015 Eucalyptus grandis HOM05D004658 ORTHO05D005927 4.2e-14 81.6 47 78.7
TAR633G2306 Trochodendron aralioides HOM05D004658 ORTHO05D005927 4.2e-14 81.6 47 78.7
Cfa005797 Carpinus fangiana HOM05D004658 ORTHO05D005927 5.4e-14 81.3 47 78.7
CDE08G1239 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 5.4e-14 81.3 47 76.6
MD03G1294700 Malus domestica HOM05D004658 ORTHO05D005927 5.4e-14 81.3 47 78.7
Oeu008475.1 Olea europaea HOM05D004658 ORTHO05D005927 5.4e-14 81.3 47 78.7
SGA_v2.0_scaffold334G49068 Striga asiatica HOM05D004658 ORTHO05D005927 5.4e-14 81.3 47 78.7
PSO210G5154 Papaver somniferum HOM05D004658 ORTHO05D005927 7.1e-14 80.9 47 76.6
PSO761G0108 Papaver somniferum HOM05D004658 ORTHO05D005927 7.1e-14 80.9 47 76.6
TPR.G4133 Trifolium pratense HOM05D004658 ORTHO05D005927 7.1e-14 80.9 47 76.6
ATR0796G129 Amborella trichopoda HOM05D004658 ORTHO05D005927 9.3e-14 80.5 47 78.7
arahy.Tifrunner.gnm1.ann1.04PXL7 Arachis hypogaea HOM05D004658 ORTHO05D005927 9.3e-14 80.5 47 78.7
arahy.Tifrunner.gnm1.ann1.T5GBA6 Arachis hypogaea HOM05D004658 ORTHO05D005927 9.3e-14 80.5 47 78.7
Ca_09212_v3 Cicer arietinum L. HOM05D004658 ORTHO05D005927 9.3e-14 80.5 47 78.7
Hund09631 Selenicereus undatus HOM05D004658 ORTHO05D005927 9.3e-14 80.5 47 78.7
MD00G1179200 Malus domestica HOM05D004658 ORTHO05D005927 1.2e-13 80.1 47 78.7
Lalb_Chr04g0259961 Lupinus albus HOM05D004658 ORTHO05D005927 1.6e-13 79.7 47 76.6
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 2.1e-13 79.3 47 76.6
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 2.1e-13 79.3 47 76.6
Medtr7g109530 Medicago truncatula HOM05D004658 ORTHO05D005927 2.1e-13 79.3 47 76.6
Os03g0307100 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 2.1e-13 79.3 47 76.6
Sopen01g031220 Solanum pennellii HOM05D004658 ORTHO05D005927 2.1e-13 79.3 74 52.7
SMO365G0028 Selaginella moellendorffii HOM05D004658 ORTHO05D005927 2.7e-13 79.0 47 74.5
Psat3g019800 Pisum sativum HOM05D004658 ORTHO05D005927 3.5e-13 78.6 47 76.6
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 4.6e-13 78.2 47 76.6
Zm00001eb014640 Zea mays HOM05D004658 ORTHO05D005927 4.6e-13 78.2 47 76.6
Sed0028068 Sechium edule HOM05D004658 ORTHO05D005927 6.0e-13 77.8 47 76.6
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 7.9e-13 77.4 47 76.6
HPP92_008950 Vanilla planifolia HOM05D004658 ORTHO05D005927 7.9e-13 77.4 47 72.3
HanXRQChr04g0106121 Helianthus annuus HOM05D004658 ORTHO05D005927 1.0e-12 77.0 47 74.5
Nn6g32423 Nelumbo nucifera HOM05D004658 ORTHO05D005927 1.0e-12 77.0 43 81.4
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 2.3e-12 75.9 48 77.1
Lalb_Chr15g0078141 Lupinus albus HOM05D004658 ORTHO05D005927 3.0e-12 75.5 47 72.3
CBR_g25720 Chara braunii HOM05D005350 ORTHO05D008838 3.9e-12 75.1 45 71.1
Cc01_g21440 Coffea canephora HOM05D004658 ORTHO05D005927 3.9e-12 75.1 56 66.1
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 6.7e-12 74.3 47 74.5
Lj2C1205T10 Lonicera japonica HOM05D004658 ORTHO05D005927 2.5e-11 72.4 58 62.1
SalBow3G1126 Salvia bowleyana HOM05D004658 ORTHO05D005927 6.9e-09 64.3 57 59.6
Rhsim13G0005000 Rhododendron simsii HOM05D004658 ORTHO05D005927 9.0e-09 63.9 86 44.2
TPR.G4093 Trifolium pratense HOM05D004658 ORTHO05D005927 9.0e-09 63.9 47 61.7
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 1.5e-08 63.2 47 57.4
Cfa005796 Carpinus fangiana HOM05D004658 ORTHO05D005927 5.8e-08 61.2 51 62.7
QL12p019917 Quercus lobata HOM05D004658 ORTHO05D005927 5.8e-08 61.2 95 40.0
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 6.4e-07 57.8 42 57.1
Lj2A1206G24 Lonicera japonica HOM05D004658 ORTHO05D005927 8.4e-07 57.4 57 54.4
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 1.1e-06 57.0 50 52.0
Haze_04782 Corylus avellana HOM05D004658 ORTHO05D005927 4.2e-06 55.1 73 47.9


User provided reference genes

Program Settings