Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly2859s0001 Marchantia polymorpha HOM05D024670 ORTHO05D020860 4.7e-166 587.8 297 100.0
Mapoly0080s0065 Marchantia polymorpha HOM05D024670 ORTHO05D020860 1.0e-152 543.5 297 93.9
Mapoly0121s0032 Marchantia polymorpha HOM05D024670 ORTHO05D020860 1.0e-152 543.5 297 93.9
Mapoly0001s0005 Marchantia polymorpha HOM05D024670 ORTHO05D020860 2.9e-51 206.5 263 43.3
Mapoly0101s0043 Marchantia polymorpha HOM05D024670 ORTHO05D020860 2.7e-41 173.3 89 93.3
VMungo1215G2945 Vigna mungo HOM05D000030 ORTHO05D009563 1.2e-12 78.2 248 27.4
Glyma.05G013900 Glycine max HOM05D000030 ORTHO05D009563 2.0e-12 77.4 244 27.5
Prupe.5G216200 Prunus persica HOM05D000030 ORTHO05D009563 2.0e-12 77.4 247 27.1
Ca_02531_v3 Cicer arietinum L. HOM05D000030 ORTHO05D009563 2.7e-12 77.0 244 27.5
Eucgr.B00689 Eucalyptus grandis HOM05D000030 ORTHO05D009563 7.8e-12 75.5 238 26.5
Sed0016338 Sechium edule HOM05D000030 ORTHO05D009563 1.0e-11 75.1 239 28.0
Haze_18591 Corylus avellana HOM05D000030 ORTHO05D009563 1.7e-11 74.3 239 26.8
Os01g0111400 Oryza sativa ssp. japonica HOM05D000030 ORTHO05D009563 1.7e-11 74.3 252 24.6
Glyma.17G122200 Glycine max HOM05D000030 ORTHO05D009563 2.3e-11 73.9 244 26.2
PSO063G1480 Papaver somniferum HOM05D000030 ORTHO05D009563 2.3e-11 73.9 259 24.3
RcHm_v2.0_Chr7g0184431 Rosa chinensis HOM05D000030 ORTHO05D009563 2.3e-11 73.9 257 24.5
PGR083G1920 Punica granatum HOM05D000030 ORTHO05D009563 3.0e-11 73.6 241 25.7
TPR.G26769 Trifolium pratense HOM05D000030 ORTHO05D009563 3.9e-11 73.2 244 26.2
Lj4g0007233 Lotus japonicus HOM05D000030 ORTHO05D009563 5.0e-11 72.8 246 26.4
ECA246G2413 Erigeron canadensis HOM05D000030 ORTHO05D009563 6.6e-11 72.4 288 23.6
Hund09994 Selenicereus undatus HOM05D000030 ORTHO05D009563 1.9e-10 70.9 291 23.7
QL10p023146 Quercus lobata HOM05D000030 ORTHO05D009563 2.5e-10 70.5 278 24.1
EL10Ac5g11242 Beta vulgaris HOM05D000030 ORTHO05D009563 3.3e-10 70.1 234 26.5
CiPaw.15G125300 Carya illinoinensis HOM05D000030 ORTHO05D009563 3.3e-10 70.1 239 26.4
MBI16_g23749_MAGBIO Magnolia biondii HOM05D000030 ORTHO05D009563 3.3e-10 70.1 233 28.3
Atru.chr9.734 Acer truncatum HOM05D000030 ORTHO05D009563 4.3e-10 69.7 241 26.1
arahy.Tifrunner.gnm1.ann1.D4358L Arachis hypogaea HOM05D000030 ORTHO05D000009 4.3e-10 69.7 306 24.5
MD06G1210000 Malus domestica HOM05D000030 ORTHO05D009563 4.3e-10 69.7 246 24.8
Thecc.03G027200 Theobroma cacao HOM05D000030 ORTHO05D009563 4.3e-10 69.7 238 26.9
vmacro17683 Vaccinium macrocarpon HOM05D000030 ORTHO05D009563 4.3e-10 69.7 238 26.9
ATR0598G059 Amborella trichopoda HOM05D000030 ORTHO05D009563 5.6e-10 69.3 259 24.3
CSS0033246 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D009563 5.6e-10 69.3 239 25.9
TWI81G0331 Tripterygium wilfordii HOM05D000030 ORTHO05D009563 5.6e-10 69.3 236 26.3
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 7.3e-10 68.9 283 24.7
CsaV3_2G007070 Cucumis sativus L. HOM05D000030 ORTHO05D009563 7.3e-10 68.9 239 26.8
MSTRG.9564 Avicennia marina HOM05D000030 ORTHO05D009563 9.5e-10 68.6 291 24.1
Nn4g23693 Nelumbo nucifera HOM05D000030 ORTHO05D009563 9.5e-10 68.6 235 24.7
ClCG02G014930 Citrullus lanatus HOM05D000030 ORTHO05D009563 1.6e-09 67.8 239 26.8
CSS0032366 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 2.1e-09 67.4 303 24.1
MELO3C031531.2 Cucumis melo HOM05D000030 ORTHO05D009563 2.1e-09 67.4 239 26.4
TPR.G22179 Trifolium pratense HOM05D000030 ORTHO05D000009 2.1e-09 67.4 288 24.0
GSVIVG01008224001 Vitis vinifera HOM05D000030 ORTHO05D009563 2.1e-09 67.4 237 26.2
AUR62032181 Chenopodium quinoa HOM05D000030 ORTHO05D009563 2.8e-09 67.0 284 24.3
Duzib068G1203 Durio zibethinus HOM05D000030 ORTHO05D009563 2.8e-09 67.0 240 26.2
AUR62040545 Chenopodium quinoa HOM05D000030 ORTHO05D000009 3.6e-09 66.6 265 23.8
Lj9C432T16 Lonicera japonica HOM05D000030 ORTHO05D009563 3.6e-09 66.6 239 25.1
Ciclev10019100m.g Citrus clementina HOM05D000030 ORTHO05D009563 4.7e-09 66.2 249 26.5
Cc04_g07610 Coffea canephora HOM05D000030 ORTHO05D009563 4.7e-09 66.2 241 25.7
HanXRQChr13g0397311 Helianthus annuus HOM05D000030 ORTHO05D000009 4.7e-09 66.2 263 24.0
Rhsim05G0179900 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.7e-09 66.2 269 27.9
Sabra12G0040700 Salix brachista HOM05D000030 ORTHO05D009563 4.7e-09 66.2 239 24.7
Gohir.A11G007550 Gossypium hirsutum HOM05D000030 ORTHO05D009563 6.2e-09 65.9 239 26.4
Aqoxy3G03880 Aquilegia oxysepala HOM05D000030 ORTHO05D009563 8.0e-09 65.5 247 25.5
Cc00_g34900 Coffea canephora HOM05D000030 ORTHO05D000009 8.0e-09 65.5 245 26.5
Gohir.D11G008433 Gossypium hirsutum HOM05D000030 ORTHO05D009563 8.0e-09 65.5 239 26.4
Gorai.007G008000 Gossypium raimondii HOM05D000030 ORTHO05D009563 8.0e-09 65.5 239 26.4
Potri.012G059200 Populus trichocarpa HOM05D000030 ORTHO05D009563 8.0e-09 65.5 236 25.0
TWI34G1469 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 8.0e-09 65.5 318 23.9
COL.COLO4_22696 Corchorus olitorius HOM05D000030 ORTHO05D009563 1.1e-08 65.1 238 26.1
HanXRQChr09g0250781 Helianthus annuus HOM05D000030 ORTHO05D000009 1.1e-08 65.1 262 24.0
FvH4_7g14271 Fragaria vesca HOM05D000030 ORTHO05D000009 1.4e-08 64.7 291 23.0
Rhsim13G0108900 Rhododendron simsii HOM05D000105 ORTHO05D000023 1.4e-08 64.7 256 24.6
RhsimUnG0106400 Rhododendron simsii HOM05D000030 ORTHO05D009563 1.4e-08 64.7 238 25.6
RcHm_v2.0_Chr1g0315421 Rosa chinensis HOM05D000030 ORTHO05D000009 1.4e-08 64.7 249 24.9
TWI15G0529 Tripterygium wilfordii HOM05D000030 ORTHO05D000009 1.4e-08 64.7 279 22.6
TWI15G1164 Tripterygium wilfordii HOM05D000030 ORTHO05D009563 1.4e-08 64.7 251 25.9
FvH4_6g20421 Fragaria vesca HOM05D000030 ORTHO05D000009 1.8e-08 64.3 315 23.5
Hma1.2p1_0594F.1_g185960 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 1.8e-08 64.3 307 26.1
Rhsim03G0195100 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.8e-08 64.3 273 27.1
SHI19838 Sapria himalayana HOM05D000030 ORTHO05D000009 1.8e-08 64.3 262 21.8
SGA_v2.0_scaffold168G38477 Striga asiatica HOM05D000030 ORTHO05D009563 1.8e-08 64.3 243 25.1
Rhsim03G0071200 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-08 63.5 266 25.6
Rhsim08G0142200 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-08 63.5 267 26.2
Hma1.2p1_0066F.1_g036660 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 4.0e-08 63.2 314 23.2
Os05g0219300 Oryza sativa ssp. japonica HOM05D000030 ORTHO05D000009 4.0e-08 63.2 269 25.7
Rhsim03G0207300 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.0e-08 63.2 268 26.9
Rhsim05G0120200 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.0e-08 63.2 270 27.4
RcHm_v2.0_Chr1g0330231 Rosa chinensis HOM05D000030 ORTHO05D000031 4.0e-08 63.2 256 23.8
Aqoxy1G03509 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 5.2e-08 62.8 256 24.2
CANSAT80G1142 Cannabis sativa HOM05D000030 ORTHO05D009563 5.2e-08 62.8 237 24.9
Lsat_1_v5_gn_5_24240 Lactuca sativa HOM05D000030 ORTHO05D009563 5.2e-08 62.8 238 23.9
Rhsim09G0124200 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.2e-08 62.8 267 24.7
SHI25981 Sapria himalayana HOM05D000030 ORTHO05D000009 5.2e-08 62.8 244 25.0
SHI31251 Sapria himalayana HOM05D000030 ORTHO05D000009 5.2e-08 62.8 270 23.7
AUR62036941 Chenopodium quinoa HOM05D000030 ORTHO05D009563 6.8e-08 62.4 281 23.5
Rhsim12G0047200 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.8e-08 62.4 265 24.5
FvH4_1g02623 Fragaria vesca HOM05D000030 ORTHO05D000009 8.9e-08 62.0 240 24.2
Manes.05G118100 Manihot esculenta HOM05D000030 ORTHO05D009563 8.9e-08 62.0 272 23.9
Os03g0563400 Oryza sativa ssp. japonica HOM05D000030 ORTHO05D000009 1.2e-07 61.6 274 26.3
Rhsim04G0042400 Rhododendron simsii HOM05D000105 ORTHO05D000023 1.2e-07 61.6 277 23.8
Rhsim07G0042700 Rhododendron simsii HOM05D000105 ORTHO05D000023 1.2e-07 61.6 277 23.8
Rhsim08G0107700 Rhododendron simsii HOM05D000105 ORTHO05D000023 1.2e-07 61.6 277 23.8
SHI31910 Sapria himalayana HOM05D000030 ORTHO05D000009 1.2e-07 61.6 256 22.3
SHI54544 Sapria himalayana HOM05D000030 ORTHO05D000009 1.2e-07 61.6 314 23.9
SHI55196 Sapria himalayana HOM05D000030 ORTHO05D000009 1.2e-07 61.6 314 23.9
AUR62031578 Chenopodium quinoa HOM05D000030 ORTHO05D000009 1.5e-07 61.2 246 24.0
Hma1.2p1_0019F.1_g013840 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 1.5e-07 61.2 306 24.2
Rhsim02G0116600 Rhododendron simsii HOM05D000105 ORTHO05D000023 1.5e-07 61.2 254 25.2
RcHm_v2.0_Chr4g0427661 Rosa chinensis HOM05D000030 ORTHO05D000009 1.5e-07 61.2 259 24.3
Sopen03g038690 Solanum pennellii HOM05D000030 ORTHO05D009563 1.5e-07 61.2 234 26.1
Rhsim07G0112400 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.0e-07 60.8 275 25.5
Rhsim11G0121600 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.0e-07 60.8 267 25.5
CSS0039597 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 2.6e-07 60.5 263 23.6
AUR62040418 Chenopodium quinoa HOM05D000030 ORTHO05D000031 2.6e-07 60.5 256 22.7
Rhsim03G0138800 Rhododendron simsii HOM05D000105 ORTHO05D000023 2.6e-07 60.5 250 26.8
TPR.G23513 Trifolium pratense HOM05D000359 ORTHO05D000251 2.6e-07 60.5 255 24.3
CSS0017195 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 3.4e-07 60.1 262 24.8
CDE06G0579 Ceratophyllum demersum HOM05D000030 ORTHO05D009563 3.4e-07 60.1 287 23.7
Rhsim03G0126100 Rhododendron simsii HOM05D000105 ORTHO05D000023 3.4e-07 60.1 256 25.0
Rhsim08G0084900 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.4e-07 60.1 268 26.5
RhsimUnG0071500 Rhododendron simsii HOM05D000105 ORTHO05D000023 3.4e-07 60.1 256 25.0
RhsimUnG0167500 Rhododendron simsii HOM05D000105 ORTHO05D000023 3.4e-07 60.1 256 25.0
CSS0037816 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 4.4e-07 59.7 260 24.2
AUR62004800 Chenopodium quinoa HOM05D000030 ORTHO05D000009 4.4e-07 59.7 257 23.0
HanXRQChr05g0157751 Helianthus annuus HOM05D000030 ORTHO05D009563 4.4e-07 59.7 247 23.1
Oeu046147.1 Olea europaea HOM05D000030 ORTHO05D000009 4.4e-07 59.7 302 24.8
Aqoxy7G02841 Aquilegia oxysepala HOM05D000030 ORTHO05D000009 5.8e-07 59.3 256 23.4
CSS0040831 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 5.8e-07 59.3 260 24.2
Migut.D01584 Erythranthe guttata HOM05D000030 ORTHO05D009563 5.8e-07 59.3 231 24.2
HanXRQChr14g0433801 Helianthus annuus HOM05D000030 ORTHO05D000031 5.8e-07 59.3 252 24.2
PSO063G2009 Papaver somniferum HOM05D000030 ORTHO05D000031 5.8e-07 59.3 250 22.8
Rhsim12G0124900 Rhododendron simsii HOM05D000105 ORTHO05D000023 5.8e-07 59.3 256 23.4
RhsimUnG0017900 Rhododendron simsii HOM05D000105 ORTHO05D000023 5.8e-07 59.3 259 23.9
RhsimUnG0243500 Rhododendron simsii HOM05D000105 ORTHO05D000023 5.8e-07 59.3 256 23.4
Oeu000293.1 Olea europaea HOM05D000030 ORTHO05D000009 7.5e-07 58.9 302 24.5
Oeu018261.1 Olea europaea HOM05D000030 ORTHO05D000009 7.5e-07 58.9 304 25.0
Rhsim04G0129200 Rhododendron simsii HOM05D000105 ORTHO05D000023 7.5e-07 58.9 253 26.1
Rhsim05G0158300 Rhododendron simsii HOM05D000030 ORTHO05D000009 7.5e-07 58.9 265 24.2
SHI17896 Sapria himalayana HOM05D000105 ORTHO05D000023 7.5e-07 58.9 255 28.6
PSO063G2153 Papaver somniferum HOM05D000030 ORTHO05D009563 9.8e-07 58.5 234 23.9
Solyc03g119830.4 Solanum lycopersicum HOM05D000030 ORTHO05D009563 9.8e-07 58.5 234 25.2
PGSC0003DMG400005619 Solanum tuberosum HOM05D000030 ORTHO05D009563 9.8e-07 58.5 248 24.6
Dinv01288 Davidia involucrata HOM05D000030 ORTHO05D000009 1.3e-06 58.2 313 24.3
HanXRQChr17g0554281 Helianthus annuus HOM05D000030 ORTHO05D000009 1.3e-06 58.2 263 22.8
Rhsim10G0057500 Rhododendron simsii HOM05D000105 ORTHO05D000023 1.3e-06 58.2 253 25.3
HanXRQChr03g0074851 Helianthus annuus HOM05D000030 ORTHO05D000009 1.7e-06 57.8 254 24.4
Oeu022538.1 Olea europaea HOM05D000105 ORTHO05D000023 1.7e-06 57.8 256 21.9
Os12g0521300 Oryza sativa ssp. japonica HOM05D000030 ORTHO05D000009 1.7e-06 57.8 300 23.7
FvH4_6g47670 Fragaria vesca HOM05D000030 ORTHO05D000009 2.2e-06 57.4 267 24.0
Manes.11G130116 Manihot esculenta HOM05D000030 ORTHO05D000009 2.2e-06 57.4 297 24.2
Mapoly0061s0079 Marchantia polymorpha HOM05D000030 ORTHO05D000009 2.2e-06 57.4 246 24.0
PSO421G0305 Papaver somniferum HOM05D000030 ORTHO05D009563 2.2e-06 57.4 223 26.5
Rhsim01G0077900 Rhododendron simsii HOM05D000105 ORTHO05D000023 2.2e-06 57.4 253 25.3
Rhsim02G0160400 Rhododendron simsii HOM05D000105 ORTHO05D000023 2.2e-06 57.4 249 24.1
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 2.2e-06 57.4 273 23.4
Nitab4.5_0003716g0090 Nicotiana tabacum HOM05D000030 ORTHO05D009563 2.9e-06 57.0 264 23.9
Rhsim02G0026300 Rhododendron simsii HOM05D000105 ORTHO05D000023 2.9e-06 57.0 249 24.1
Hund30778 Selenicereus undatus HOM05D000030 ORTHO05D000009 2.9e-06 57.0 260 22.7
Hma1.2p1_0229F.1_g097020 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 3.7e-06 56.6 294 24.8
Mapoly0015s0171 Marchantia polymorpha HOM05D000030 ORTHO05D000009 3.7e-06 56.6 247 22.3
Oeu036151.1 Olea europaea HOM05D000030 ORTHO05D000009 3.7e-06 56.6 296 24.7
PSO478G2096 Papaver somniferum HOM05D000030 ORTHO05D000023 3.7e-06 56.6 276 23.9
Rhsim01G0133900 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.7e-06 56.6 269 22.3
Rhsim11G0144400 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.7e-06 56.6 271 24.7
Rhsim12G0104300 Rhododendron simsii HOM05D000105 ORTHO05D000023 3.7e-06 56.6 249 23.7
RhsimUnG0175500 Rhododendron simsii HOM05D000105 ORTHO05D000023 3.7e-06 56.6 250 26.0
CSS0041907 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D000009 4.9e-06 56.2 260 24.6
MD00G1092100 Malus domestica HOM05D000030 ORTHO05D000009 4.9e-06 56.2 226 24.3
Rhsim04G0130100 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.9e-06 56.2 322 23.6
Rhsim09G0079000 Rhododendron simsii HOM05D000030 ORTHO05D000031 4.9e-06 56.2 269 24.5
TPR.G5023 Trifolium pratense HOM05D000030 ORTHO05D000009 4.9e-06 56.2 255 23.5
FvH4_5g24030 Fragaria vesca HOM05D000030 ORTHO05D000009 6.4e-06 55.8 238 21.8
Hma1.2p1_0849F.1_g228110 Hydrangea macrophylla HOM05D000030 ORTHO05D000009 6.4e-06 55.8 264 23.5
PSO782G5051 Papaver somniferum HOM05D000030 ORTHO05D000009 6.4e-06 55.8 268 24.3
Rhsim01G0147200 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.4e-06 55.8 238 21.8
Rhsim02G0073700 Rhododendron simsii HOM05D000105 ORTHO05D000023 6.4e-06 55.8 255 25.9
Rhsim02G0161100 Rhododendron simsii HOM05D000105 ORTHO05D000023 6.4e-06 55.8 255 25.9
Rhsim06G0083600 Rhododendron simsii HOM05D000105 ORTHO05D000023 6.4e-06 55.8 256 23.0
Hund22431 Selenicereus undatus HOM05D000030 ORTHO05D000009 6.4e-06 55.8 264 22.3
Hund25215 Selenicereus undatus HOM05D000030 ORTHO05D000009 6.4e-06 55.8 264 22.3
ECA238G1440 Erigeron canadensis HOM05D000030 ORTHO05D000031 8.3e-06 55.5 261 24.9
Nitab4.5_0000410g0150 Nicotiana tabacum HOM05D000030 ORTHO05D009563 8.3e-06 55.5 233 25.3
Os09g0101200 Oryza sativa ssp. japonica HOM05D000030 ORTHO05D000009 8.3e-06 55.5 277 24.5
SHI35636 Sapria himalayana HOM05D000105 ORTHO05D000023 8.3e-06 55.5 270 25.2


User provided reference genes

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