Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly1060s0001 Marchantia polymorpha HOM05D004658 ORTHO05D005927 2.5e-121 438.7 212 100.0
Mapoly0049s0016 Marchantia polymorpha HOM05D004658 ORTHO05D005927 3.7e-117 424.9 212 97.2
Mapoly0032s0164 Marchantia polymorpha HOM05D004658 ORTHO05D005927 2.4e-116 422.2 208 97.1
Mapoly0893s0002 Marchantia polymorpha HOM05D004658 ORTHO05D005927 3.1e-111 405.2 201 98.0
Pp3c6_17840 Physcomitrium patens HOM05D004658 ORTHO05D005927 1.8e-87 326.2 208 71.2
SMO365G0028 Selaginella moellendorffii HOM05D004658 ORTHO05D005927 3.8e-85 318.5 207 68.6
Pp3c25_7720 Physcomitrium patens HOM05D004658 ORTHO05D005927 6.4e-85 317.8 208 68.8
PSO210G5154 Papaver somniferum HOM05D004658 ORTHO05D005927 8.4e-85 317.4 208 70.2
AagrBONN_evm.TU.Sc2ySwM_228.2732 Anthoceros agrestis HOM05D004658 ORTHO05D005927 7.1e-84 314.3 208 67.3
PSO761G0108 Papaver somniferum HOM05D004658 ORTHO05D005927 2.1e-83 312.8 208 69.7
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 7.9e-83 310.8 209 69.4
TAR362G0927 Trochodendron aralioides HOM05D004658 ORTHO05D005927 1.0e-82 310.5 209 68.4
Nn3g21693 Nelumbo nucifera HOM05D004658 ORTHO05D005927 1.3e-82 310.1 209 68.9
THA.LOC104817457 Tarenaya hassleriana HOM05D004658 ORTHO05D005927 1.3e-82 310.1 209 67.9
CSS0014890 Camellia sinensis var. sinensis HOM05D004658 ORTHO05D005927 2.3e-82 309.3 209 68.4
Thecc.01G313700 Theobroma cacao HOM05D004658 ORTHO05D005927 2.3e-82 309.3 209 67.5
GSVIVG01028121001 Vitis vinifera HOM05D004658 ORTHO05D005927 5.1e-82 308.1 209 68.4
COL.COLO4_23230 Corchorus olitorius HOM05D004658 ORTHO05D005927 6.6e-82 307.8 209 67.9
Gorai.008G139300 Gossypium raimondii HOM05D004658 ORTHO05D005927 6.6e-82 307.8 209 67.0
Rhsim13G0005000 Rhododendron simsii HOM05D004658 ORTHO05D005927 6.6e-82 307.8 209 66.5
SalBow3G1126 Salvia bowleyana HOM05D004658 ORTHO05D005927 6.6e-82 307.8 209 67.9
Eucgr.H01015 Eucalyptus grandis HOM05D004658 ORTHO05D005927 8.7e-82 307.4 209 68.9
FAN04G3181 Fragaria x ananassa HOM05D004658 ORTHO05D005927 1.1e-81 307.0 209 67.9
Gohir.D12G128500 Gossypium hirsutum HOM05D004658 ORTHO05D005927 1.1e-81 307.0 209 67.0
Aqoxy2G02766 Aquilegia oxysepala HOM05D004658 ORTHO05D005927 1.5e-81 306.6 209 67.9
Os03g0307100 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 1.5e-81 306.6 206 68.4
RcHm_v2.0_Chr7g0241431 Rosa chinensis HOM05D004658 ORTHO05D005927 1.5e-81 306.6 209 67.9
Solyc01g079450.3 Solanum lycopersicum HOM05D004658 ORTHO05D005927 1.5e-81 306.6 209 67.9
Sopen01g031220 Solanum pennellii HOM05D004658 ORTHO05D005927 1.5e-81 306.6 209 67.9
ATR0796G129 Amborella trichopoda HOM05D004658 ORTHO05D005927 1.9e-81 306.2 207 70.0
Cpa.g.sc18.45 Carica papaya HOM05D004658 ORTHO05D005927 1.9e-81 306.2 209 67.5
Actinidia17899 Actinidia chinensis HOM05D004658 ORTHO05D005927 2.5e-81 305.8 209 67.9
CDE08G1239 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 2.5e-81 305.8 208 68.3
Haze_05044 Corylus avellana HOM05D004658 ORTHO05D005927 2.5e-81 305.8 209 68.4
FvH4_5g39170 Fragaria vesca HOM05D004658 ORTHO05D005927 2.5e-81 305.8 209 67.9
FAN18G2042 Fragaria x ananassa HOM05D004658 ORTHO05D005927 2.5e-81 305.8 209 67.9
MBI18_g17316_MAGBIO Magnolia biondii HOM05D004658 ORTHO05D005927 2.5e-81 305.8 212 67.9
Dinv33118 Davidia involucrata HOM05D004658 ORTHO05D005927 3.3e-81 305.4 209 67.9
Cfa005797 Carpinus fangiana HOM05D004658 ORTHO05D005927 4.3e-81 305.1 209 68.4
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 4.3e-81 305.1 209 67.9
Aa31LG1G28690 Aethionema arabicum HOM05D004658 ORTHO05D005927 9.6e-81 303.9 209 68.9
TAR633G2306 Trochodendron aralioides HOM05D004658 ORTHO05D005927 9.6e-81 303.9 209 67.0
Lalb_Chr04g0259961 Lupinus albus HOM05D004658 ORTHO05D005927 1.3e-80 303.5 209 66.0
Sed0028068 Sechium edule HOM05D004658 ORTHO05D005927 1.3e-80 303.5 209 66.0
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 1.6e-80 303.1 209 67.5
Migut.D00082 Erythranthe guttata HOM05D004658 ORTHO05D005927 1.6e-80 303.1 209 67.9
RcHm_v2.0_Chr7g0241201 Rosa chinensis HOM05D004658 ORTHO05D005927 1.6e-80 303.1 209 67.0
Sc17g0000440 Simmondsia chinensis HOM05D004658 ORTHO05D005927 1.6e-80 303.1 209 67.5
Lj1g0019327 Lotus japonicus HOM05D004658 ORTHO05D005927 2.8e-80 302.4 209 65.1
Atru.chr5.997 Acer truncatum HOM05D004658 ORTHO05D005927 4.8e-80 301.6 209 66.0
Lj2C1205T10 Lonicera japonica HOM05D004658 ORTHO05D005927 4.8e-80 301.6 217 65.9
Oeu008475.1 Olea europaea HOM05D004658 ORTHO05D005927 4.8e-80 301.6 209 67.0
TWI18G0165 Tripterygium wilfordii HOM05D004658 ORTHO05D005927 4.8e-80 301.6 209 67.5
CiPaw.07G117600 Carya illinoinensis HOM05D004658 ORTHO05D005927 6.2e-80 301.2 209 66.0
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 6.2e-80 301.2 209 66.0
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 1.4e-79 300.1 209 67.5
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 1.8e-79 299.7 209 67.5
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 1.8e-79 299.7 209 67.5
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 1.8e-79 299.7 209 65.1
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 1.8e-79 299.7 209 67.5
FAN08G2138 Fragaria x ananassa HOM05D004658 ORTHO05D005927 1.8e-79 299.7 209 67.5
Gohir.A12G124600 Gossypium hirsutum HOM05D004658 ORTHO05D005927 1.8e-79 299.7 209 65.6
AT2G47390 Arabidopsis thaliana HOM05D004658 ORTHO05D005927 2.4e-79 299.3 209 67.5
MSTRG.18101 Avicennia marina HOM05D004658 ORTHO05D005927 2.4e-79 299.3 209 67.5
Lalb_Chr15g0078141 Lupinus albus HOM05D004658 ORTHO05D005927 2.4e-79 299.3 209 65.1
Sabra14G0089400 Salix brachista HOM05D004658 ORTHO05D005927 2.4e-79 299.3 209 66.0
vmacro02405 Vaccinium macrocarpon HOM05D004658 ORTHO05D005927 2.4e-79 299.3 208 66.3
MELO3C015923.2 Cucumis melo HOM05D004658 ORTHO05D005927 3.1e-79 298.9 210 66.7
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 3.1e-79 298.9 209 66.5
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 5.3e-79 298.1 209 67.0
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 5.3e-79 298.1 213 64.8
QL12p019917 Quercus lobata HOM05D004658 ORTHO05D005927 5.3e-79 298.1 210 64.8
Sp4g29330 Schrenkiella parvula HOM05D004658 ORTHO05D005927 5.3e-79 298.1 209 67.0
BcaC02g06972 Brassica carinata HOM05D004658 ORTHO05D005927 6.9e-79 297.7 209 67.0
Ca_09212_v3 Cicer arietinum L. HOM05D004658 ORTHO05D005927 6.9e-79 297.7 209 64.1
HanXRQChr04g0106121 Helianthus annuus HOM05D004658 ORTHO05D005927 6.9e-79 297.7 209 65.1
Potri.002G196000 Populus trichocarpa HOM05D004658 ORTHO05D005927 6.9e-79 297.7 209 66.5
Ah.02g112260 Amaranthus hybridus HOM05D004658 ORTHO05D005927 9.0e-79 297.4 209 65.6
Cc01_g21440 Coffea canephora HOM05D004658 ORTHO05D005927 9.0e-79 297.4 210 66.2
MD00G1179200 Malus domestica HOM05D004658 ORTHO05D005927 9.0e-79 297.4 209 66.0
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 9.0e-79 297.4 209 65.6
Zm00001eb014640 Zea mays HOM05D004658 ORTHO05D005927 9.0e-79 297.4 206 65.5
C04p00470 Brassica napus HOM05D004658 ORTHO05D005927 1.2e-78 297.0 209 66.0
Duzib133G0239 Durio zibethinus HOM05D004658 ORTHO05D005927 1.2e-78 297.0 209 65.6
Glyma.03G219500 Glycine max HOM05D004658 ORTHO05D005927 1.2e-78 297.0 210 64.8
TPR.G4133 Trifolium pratense HOM05D004658 ORTHO05D005927 1.2e-78 297.0 209 64.1
CANSAT11G0445 Cannabis sativa HOM05D004658 ORTHO05D005927 1.5e-78 296.6 209 65.6
Lj2A1206G24 Lonicera japonica HOM05D004658 ORTHO05D005927 1.5e-78 296.6 209 66.0
Potri.014G120600 Populus trichocarpa HOM05D004658 ORTHO05D005927 2.0e-78 296.2 209 65.6
C04p72760 Brassica napus HOM05D004658 ORTHO05D005927 2.6e-78 295.8 209 66.5
CsaV3_7G029970 Cucumis sativus L. HOM05D004658 ORTHO05D005927 2.6e-78 295.8 210 65.7
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 4.5e-78 295.0 209 65.1
Medtr7g109530 Medicago truncatula HOM05D004658 ORTHO05D005927 4.5e-78 295.0 209 63.6
arahy.Tifrunner.gnm1.ann1.04PXL7 Arachis hypogaea HOM05D004658 ORTHO05D005927 5.8e-78 294.7 209 65.6
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 5.8e-78 294.7 209 65.6
CARHR142780 Cardamine hirsuta HOM05D004658 ORTHO05D005927 5.8e-78 294.7 209 66.5
MD03G1294700 Malus domestica HOM05D004658 ORTHO05D005927 5.8e-78 294.7 209 65.6
Psat3g019800 Pisum sativum HOM05D004658 ORTHO05D005927 5.8e-78 294.7 209 65.1
AUR62011802 Chenopodium quinoa HOM05D004658 ORTHO05D005927 7.6e-78 294.3 209 65.1
ClCG09G005080 Citrullus lanatus HOM05D004658 ORTHO05D005927 9.9e-78 293.9 209 66.0
arahy.Tifrunner.gnm1.ann1.T5GBA6 Arachis hypogaea HOM05D004658 ORTHO05D005927 1.3e-77 293.5 209 65.1
Phvul.001G213000 Phaseolus vulgaris HOM05D004658 ORTHO05D005927 3.8e-77 292.0 209 63.2
TPR.G4093 Trifolium pratense HOM05D004658 ORTHO05D005927 3.8e-77 292.0 209 64.1
VMungo1383G2746 Vigna mungo HOM05D004658 ORTHO05D005927 3.8e-77 292.0 209 63.6
Glyma.19G216400 Glycine max HOM05D004658 ORTHO05D005927 1.1e-76 290.4 210 63.8
Hund09631 Selenicereus undatus HOM05D004658 ORTHO05D005927 1.4e-76 290.0 209 65.1
SGA_v2.0_scaffold334G49068 Striga asiatica HOM05D004658 ORTHO05D005927 1.4e-76 290.0 209 63.6
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 1.9e-76 289.7 209 65.1
CDE02G1789 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 5.4e-76 288.1 208 65.4
HPP92_008950 Vanilla planifolia HOM05D004658 ORTHO05D005927 1.6e-75 286.6 208 62.0
Sed0011993 Sechium edule HOM05D004658 ORTHO05D005927 4.3e-73 278.5 209 63.2
Haze_05045 Corylus avellana HOM05D004658 ORTHO05D005927 3.7e-72 275.4 211 62.6
Cfa005796 Carpinus fangiana HOM05D004658 ORTHO05D005927 8.1e-72 274.2 209 65.1
SHI28963 Sapria himalayana HOM05D004658 ORTHO05D005927 3.1e-71 272.3 209 57.9
Pp3c23_15570 Physcomitrium patens HOM05D004658 ORTHO05D005927 5.3e-71 271.6 204 61.3
Haze_04782 Corylus avellana HOM05D004658 ORTHO05D005927 2.9e-69 265.8 209 60.8
Ciclev10000356m.g Citrus clementina HOM05D004658 ORTHO05D005927 1.2e-67 260.4 208 57.7
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 1.2e-67 260.4 210 58.1
CBR_g25720 Chara braunii HOM05D005350 ORTHO05D008838 2.5e-60 236.1 168 64.9
Haze_05046 Corylus avellana HOM05D004658 ORTHO05D005927 1.8e-58 229.9 228 50.4
Duzib138G1936 Durio zibethinus HOM05D004658 ORTHO05D005927 1.6e-56 223.4 209 53.6
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 1.4e-50 203.8 212 51.4
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 1.8e-50 203.4 209 51.2
BolC4t28757H Brassica oleracea HOM05D004658 ORTHO05D005927 6.5e-45 184.9 129 68.2
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 7.9e-43 177.9 290 36.2
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 5.7e-41 171.8 216 41.7
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 3.2e-28 129.4 82 68.3
RcHm_v2.0_Chr5g0055731 Rosa chinensis HOM05D004658 ORTHO05D005927 3.6e-27 125.9 108 57.4
Nn6g32423 Nelumbo nucifera HOM05D004658 ORTHO05D005927 1.5e-12 77.4 49 65.3


User provided reference genes

Program Settings