Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0893s0002 Marchantia polymorpha HOM05D004658 ORTHO05D005927 1.4e-113 412.9 201 100.0
Mapoly1060s0001 Marchantia polymorpha HOM05D004658 ORTHO05D005927 4.9e-111 404.4 201 98.0
Mapoly0049s0016 Marchantia polymorpha HOM05D004658 ORTHO05D005927 7.9e-109 397.1 201 96.5
Mapoly0032s0164 Marchantia polymorpha HOM05D004658 ORTHO05D005927 1.0e-108 396.7 197 97.0
Pp3c6_17840 Physcomitrium patens HOM05D004658 ORTHO05D005927 7.0e-81 304.3 197 70.6
SMO365G0028 Selaginella moellendorffii HOM05D004658 ORTHO05D005927 2.9e-79 298.9 196 68.4
Pp3c25_7720 Physcomitrium patens HOM05D004658 ORTHO05D005927 3.2e-78 295.4 197 68.0
PSO210G5154 Papaver somniferum HOM05D004658 ORTHO05D005927 4.2e-78 295.0 197 69.5
PSO761G0108 Papaver somniferum HOM05D004658 ORTHO05D005927 1.0e-76 290.4 197 69.0
AagrBONN_evm.TU.Sc2ySwM_228.2732 Anthoceros agrestis HOM05D004658 ORTHO05D005927 1.8e-76 289.7 197 65.5
ATR0796G129 Amborella trichopoda HOM05D004658 ORTHO05D005927 4.0e-76 288.5 197 70.1
Nn3g21693 Nelumbo nucifera HOM05D004658 ORTHO05D005927 4.0e-76 288.5 198 68.7
Peaxi162Scf00691g00219 Petunia axillaris HOM05D004658 ORTHO05D005927 4.0e-76 288.5 198 68.7
Thecc.01G313700 Theobroma cacao HOM05D004658 ORTHO05D005927 4.0e-76 288.5 198 67.2
Eucgr.H01015 Eucalyptus grandis HOM05D004658 ORTHO05D005927 5.2e-76 288.1 198 68.7
THA.LOC104817457 Tarenaya hassleriana HOM05D004658 ORTHO05D005927 6.7e-76 287.7 198 67.2
TAR362G0927 Trochodendron aralioides HOM05D004658 ORTHO05D005927 6.7e-76 287.7 198 67.7
Cpa.g.sc18.45 Carica papaya HOM05D004658 ORTHO05D005927 1.2e-75 287.0 198 67.2
COL.COLO4_23230 Corchorus olitorius HOM05D004658 ORTHO05D005927 1.5e-75 286.6 198 67.2
CSS0014890 Camellia sinensis var. sinensis HOM05D004658 ORTHO05D005927 2.0e-75 286.2 198 67.2
Cfa005797 Carpinus fangiana HOM05D004658 ORTHO05D005927 2.6e-75 285.8 198 68.2
CDE08G1239 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 2.6e-75 285.8 197 67.5
FAN04G3181 Fragaria x ananassa HOM05D004658 ORTHO05D005927 2.6e-75 285.8 198 67.7
Rhsim13G0005000 Rhododendron simsii HOM05D004658 ORTHO05D005927 2.6e-75 285.8 198 65.7
GSVIVG01028121001 Vitis vinifera HOM05D004658 ORTHO05D005927 2.6e-75 285.8 198 67.7
Gorai.008G139300 Gossypium raimondii HOM05D004658 ORTHO05D005927 3.3e-75 285.4 198 66.2
RcHm_v2.0_Chr7g0241431 Rosa chinensis HOM05D004658 ORTHO05D005927 3.3e-75 285.4 198 67.7
SalBow3G1126 Salvia bowleyana HOM05D004658 ORTHO05D005927 3.3e-75 285.4 198 66.7
Os03g0307100 Oryza sativa ssp. japonica HOM05D004658 ORTHO05D005927 4.4e-75 285.0 199 66.8
FvH4_5g39170 Fragaria vesca HOM05D004658 ORTHO05D005927 5.7e-75 284.6 198 67.7
FAN18G2042 Fragaria x ananassa HOM05D004658 ORTHO05D005927 5.7e-75 284.6 198 67.7
Gohir.D12G128500 Gossypium hirsutum HOM05D004658 ORTHO05D005927 5.7e-75 284.6 198 66.2
Solyc01g079450.3 Solanum lycopersicum HOM05D004658 ORTHO05D005927 5.7e-75 284.6 198 67.2
Sopen01g031220 Solanum pennellii HOM05D004658 ORTHO05D005927 5.7e-75 284.6 198 67.2
Aqoxy2G02766 Aquilegia oxysepala HOM05D004658 ORTHO05D005927 7.5e-75 284.3 198 67.2
Actinidia17899 Actinidia chinensis HOM05D004658 ORTHO05D005927 9.7e-75 283.9 198 67.2
Sc17g0000440 Simmondsia chinensis HOM05D004658 ORTHO05D005927 9.7e-75 283.9 198 67.2
Haze_05044 Corylus avellana HOM05D004658 ORTHO05D005927 1.3e-74 283.5 198 67.7
MBI18_g17316_MAGBIO Magnolia biondii HOM05D004658 ORTHO05D005927 1.3e-74 283.5 201 67.2
Dinv33118 Davidia involucrata HOM05D004658 ORTHO05D005927 1.7e-74 283.1 198 67.2
Lalb_Chr04g0259961 Lupinus albus HOM05D004658 ORTHO05D005927 2.2e-74 282.7 198 65.7
DCAR_018298 Daucus carota HOM05D004658 ORTHO05D005927 3.7e-74 282.0 198 66.7
RcHm_v2.0_Chr7g0241201 Rosa chinensis HOM05D004658 ORTHO05D005927 3.7e-74 282.0 198 66.7
Gohir.A12G124600 Gossypium hirsutum HOM05D004658 ORTHO05D005927 4.8e-74 281.6 198 65.2
Lj1g0019327 Lotus japonicus HOM05D004658 ORTHO05D005927 4.8e-74 281.6 198 64.6
TAR633G2306 Trochodendron aralioides HOM05D004658 ORTHO05D005927 4.8e-74 281.6 198 66.2
Dinv10101 Davidia involucrata HOM05D004658 ORTHO05D005927 8.2e-74 280.8 198 66.7
TWI18G0165 Tripterygium wilfordii HOM05D004658 ORTHO05D005927 8.2e-74 280.8 198 67.2
Aa31LG1G28690 Aethionema arabicum HOM05D004658 ORTHO05D005927 1.1e-73 280.4 198 67.7
Sed0028068 Sechium edule HOM05D004658 ORTHO05D005927 1.1e-73 280.4 198 64.6
Migut.D00082 Erythranthe guttata HOM05D004658 ORTHO05D005927 1.4e-73 280.0 198 66.7
Lj2C1205T10 Lonicera japonica HOM05D004658 ORTHO05D005927 1.8e-73 279.6 206 65.0
vmacro02405 Vaccinium macrocarpon HOM05D004658 ORTHO05D005927 1.8e-73 279.6 198 65.7
Atru.chr5.997 Acer truncatum HOM05D004658 ORTHO05D005927 2.4e-73 279.3 198 65.2
Oeu008475.1 Olea europaea HOM05D004658 ORTHO05D005927 2.4e-73 279.3 198 65.7
Potri.002G196000 Populus trichocarpa HOM05D004658 ORTHO05D005927 2.4e-73 279.3 198 66.2
CiPaw.07G117600 Carya illinoinensis HOM05D004658 ORTHO05D005927 3.1e-73 278.9 198 65.2
Manes.05G003600 Manihot esculenta HOM05D004658 ORTHO05D005927 3.1e-73 278.9 198 65.2
Zm00001eb014640 Zea mays HOM05D004658 ORTHO05D005927 3.1e-73 278.9 199 64.3
Ah.02g112260 Amaranthus hybridus HOM05D004658 ORTHO05D005927 5.3e-73 278.1 198 65.2
ECA236G4246 Erigeron canadensis HOM05D004658 ORTHO05D005927 5.3e-73 278.1 198 64.6
FAN08G2138 Fragaria x ananassa HOM05D004658 ORTHO05D005927 5.3e-73 278.1 198 67.2
BcaB02g08775 Brassica carinata HOM05D004658 ORTHO05D005927 7.0e-73 277.7 198 66.7
HanXRQChr06g0168141 Helianthus annuus HOM05D004658 ORTHO05D005927 7.0e-73 277.7 198 66.2
BraA05t19050Z Brassica rapa HOM05D004658 ORTHO05D005927 9.1e-73 277.3 198 66.7
Carub.0004s3011 Capsella rubella HOM05D004658 ORTHO05D005927 9.1e-73 277.3 198 66.7
Thhalv10001294m.g Eutrema salsugineum HOM05D004658 ORTHO05D005927 9.1e-73 277.3 198 66.7
Lsat_1_v5_gn_8_166941 Lactuca sativa HOM05D004658 ORTHO05D005927 9.1e-73 277.3 202 64.4
AT2G47390 Arabidopsis thaliana HOM05D004658 ORTHO05D005927 1.2e-72 276.9 198 66.7
MSTRG.18101 Avicennia marina HOM05D004658 ORTHO05D005927 1.2e-72 276.9 198 66.2
Ca_09212_v3 Cicer arietinum L. HOM05D004658 ORTHO05D005927 1.2e-72 276.9 198 63.6
Sabra14G0089400 Salix brachista HOM05D004658 ORTHO05D005927 1.2e-72 276.9 198 65.2
Lalb_Chr15g0078141 Lupinus albus HOM05D004658 ORTHO05D005927 1.6e-72 276.6 198 64.1
MELO3C015923.2 Cucumis melo HOM05D004658 ORTHO05D005927 2.0e-72 276.2 199 65.3
Duzib133G0239 Durio zibethinus HOM05D004658 ORTHO05D005927 2.0e-72 276.2 198 65.2
Glyma.03G219500 Glycine max HOM05D004658 ORTHO05D005927 2.0e-72 276.2 199 64.3
MD00G1179200 Malus domestica HOM05D004658 ORTHO05D005927 2.0e-72 276.2 198 65.7
Prupe.8G266800 Prunus persica HOM05D004658 ORTHO05D005927 2.0e-72 276.2 198 65.2
TPR.G4133 Trifolium pratense HOM05D004658 ORTHO05D005927 2.0e-72 276.2 198 63.6
A05p00520 Brassica napus HOM05D004658 ORTHO05D005927 2.7e-72 275.8 198 66.2
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 2.7e-72 275.8 198 64.6
QL12p019917 Quercus lobata HOM05D004658 ORTHO05D005927 2.7e-72 275.8 199 63.8
Sp4g29330 Schrenkiella parvula HOM05D004658 ORTHO05D005927 2.7e-72 275.8 198 66.2
BcaC02g06972 Brassica carinata HOM05D004658 ORTHO05D005927 3.5e-72 275.4 198 66.2
HanXRQChr04g0106121 Helianthus annuus HOM05D004658 ORTHO05D005927 3.5e-72 275.4 198 64.1
CANSAT11G0445 Cannabis sativa HOM05D004658 ORTHO05D005927 4.5e-72 275.0 198 65.2
AUR62011802 Chenopodium quinoa HOM05D004658 ORTHO05D005927 4.5e-72 275.0 198 64.6
Cc01_g21440 Coffea canephora HOM05D004658 ORTHO05D005927 4.5e-72 275.0 199 65.3
C04p00470 Brassica napus HOM05D004658 ORTHO05D005927 5.9e-72 274.6 198 65.2
Lj2A1206G24 Lonicera japonica HOM05D004658 ORTHO05D005927 5.9e-72 274.6 198 65.2
CARHR142780 Cardamine hirsuta HOM05D004658 ORTHO05D005927 7.7e-72 274.2 198 66.2
Medtr7g109530 Medicago truncatula HOM05D004658 ORTHO05D005927 7.7e-72 274.2 198 63.1
arahy.Tifrunner.gnm1.ann1.04PXL7 Arachis hypogaea HOM05D004658 ORTHO05D005927 1.0e-71 273.9 198 65.2
ClCG09G005080 Citrullus lanatus HOM05D004658 ORTHO05D005927 1.0e-71 273.9 198 65.2
Psat3g019800 Pisum sativum HOM05D004658 ORTHO05D005927 1.0e-71 273.9 198 64.6
Potri.014G120600 Populus trichocarpa HOM05D004658 ORTHO05D005927 1.0e-71 273.9 198 64.6
C04p72760 Brassica napus HOM05D004658 ORTHO05D005927 1.3e-71 273.5 198 65.7
Eucgr.H01014 Eucalyptus grandis HOM05D004658 ORTHO05D005927 1.3e-71 273.5 198 65.2
CsaV3_7G029970 Cucumis sativus L. HOM05D004658 ORTHO05D005927 1.7e-71 273.1 199 64.3
arahy.Tifrunner.gnm1.ann1.T5GBA6 Arachis hypogaea HOM05D004658 ORTHO05D005927 2.2e-71 272.7 198 64.6
BcaC02g12575 Brassica carinata HOM05D004658 ORTHO05D005927 2.9e-71 272.3 198 64.6
MD03G1294700 Malus domestica HOM05D004658 ORTHO05D005927 2.9e-71 272.3 198 64.6
Phvul.001G213000 Phaseolus vulgaris HOM05D004658 ORTHO05D005927 3.8e-71 271.9 198 63.1
Hund09631 Selenicereus undatus HOM05D004658 ORTHO05D005927 3.8e-71 271.9 198 65.2
VMungo1383G2746 Vigna mungo HOM05D004658 ORTHO05D005927 3.8e-71 271.9 198 63.6
TPR.G4093 Trifolium pratense HOM05D004658 ORTHO05D005927 6.5e-71 271.2 198 63.6
Glyma.19G216400 Glycine max HOM05D004658 ORTHO05D005927 1.9e-70 269.6 199 63.3
CDE02G1789 Ceratophyllum demersum HOM05D004658 ORTHO05D005927 7.2e-70 267.7 197 64.5
SGA_v2.0_scaffold334G49068 Striga asiatica HOM05D004658 ORTHO05D005927 1.2e-69 266.9 198 62.1
HPP92_008950 Vanilla planifolia HOM05D004658 ORTHO05D005927 2.1e-69 266.2 197 61.4
Pp3c23_15570 Physcomitrium patens HOM05D004658 ORTHO05D005927 1.5e-67 260.0 196 61.2
Sed0011993 Sechium edule HOM05D004658 ORTHO05D005927 2.8e-66 255.8 198 61.6
SHI28963 Sapria himalayana HOM05D004658 ORTHO05D005927 1.1e-65 253.8 200 56.5
Haze_05045 Corylus avellana HOM05D004658 ORTHO05D005927 1.8e-65 253.1 200 61.5
Cfa005796 Carpinus fangiana HOM05D004658 ORTHO05D005927 5.4e-65 251.5 198 64.1
Ciclev10000356m.g Citrus clementina HOM05D004658 ORTHO05D005927 1.5e-62 243.4 198 57.1
Haze_04782 Corylus avellana HOM05D004658 ORTHO05D005927 1.5e-62 243.4 198 59.6
Ciclev10018865m.g Citrus clementina HOM05D004658 ORTHO05D005927 7.2e-62 241.1 199 57.3
CBR_g25720 Chara braunii HOM05D005350 ORTHO05D008838 2.8e-53 212.6 157 63.7
Haze_05046 Corylus avellana HOM05D004658 ORTHO05D005927 6.8e-52 208.0 217 48.8
Duzib138G1936 Durio zibethinus HOM05D004658 ORTHO05D005927 5.8e-51 204.9 198 53.0
BolC4t28757H Brassica oleracea HOM05D004658 ORTHO05D005927 9.5e-46 187.6 129 69.0
ECA232G0051 Erigeron canadensis HOM05D004658 ORTHO05D005927 6.2e-45 184.9 198 50.5
PRCOL_00005843 Prasinoderma coloniale HOM05D004658 ORTHO05D005927 1.8e-44 183.3 201 50.2
Cre07.g313122 Chlamydomonas reinhardtii HOM05D004658 ORTHO05D005927 5.6e-38 161.8 278 35.6
MCO09G418 Micromonas commoda HOM05D004658 ORTHO05D005927 6.8e-36 154.8 204 40.7
RcHm_v2.0_Chr5g0055731 Rosa chinensis HOM05D004658 ORTHO05D005927 1.7e-26 123.6 99 60.6
Nitab4.5_0003540g0030 Nicotiana tabacum HOM05D004658 ORTHO05D005927 8.1e-21 104.8 71 64.8
Nn6g32423 Nelumbo nucifera HOM05D004658 ORTHO05D005927 4.3e-06 55.8 38 60.5


User provided reference genes

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