Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 7.7e-188 660.2 310 100.0
Pp3c1_5860 Physcomitrium patens HOM05D019566 ORTHO05D017343 8.1e-121 437.6 261 78.2
SEGI_31998 Sequoiadendron giganteum HOM05D019566 ORTHO05D017343 1.1e-112 410.6 264 72.3
SMO119G0520 Selaginella moellendorffii HOM05D019566 ORTHO05D017343 7.2e-101 371.3 221 78.3
AagrBONN_evm.TU.Sc2ySwM_228.3830 Anthoceros agrestis HOM05D019566 ORTHO05D017343 1.0e-70 271.2 157 78.3
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 8.5e-70 268.1 262 50.4
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 2.8e-12 77.0 61 65.6
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 1.2e-10 71.6 55 65.5
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 2.6e-10 70.5 43 72.1
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.6e-10 70.5 43 72.1
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.6e-10 70.5 43 72.1
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.6e-10 70.5 43 72.1
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.6e-10 70.5 43 72.1
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 2.6e-10 70.5 43 72.1
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 7.6e-10 68.9 43 69.8
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 7.6e-10 68.9 61 55.7
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 9.9e-10 68.6 43 67.4
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 9.9e-10 68.6 45 68.9
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 9.9e-10 68.6 43 67.4
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 9.9e-10 68.6 43 67.4
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 1.3e-09 68.2 43 67.4
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 1.3e-09 68.2 43 69.8
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 1.3e-09 68.2 43 67.4
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 1.3e-09 68.2 43 69.8
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 1.3e-09 68.2 43 67.4
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 1.7e-09 67.8 43 67.4
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 2.2e-09 67.4 38 73.7
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 2.2e-09 67.4 44 65.9
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 2.9e-09 67.0 43 65.1
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 2.9e-09 67.0 43 65.1
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 2.9e-09 67.0 43 67.4
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 2.9e-09 67.0 43 65.1
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 2.9e-09 67.0 43 67.4
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 2.9e-09 67.0 43 67.4
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 2.9e-09 67.0 55 58.2
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.9e-09 67.0 43 65.1
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 2.9e-09 67.0 43 67.4
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 3.8e-09 66.6 43 65.1
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 3.8e-09 66.6 43 65.1
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.8e-09 66.6 43 65.1
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 3.8e-09 66.6 43 67.4
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 3.8e-09 66.6 43 65.1
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 3.8e-09 66.6 43 65.1
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 3.8e-09 66.6 43 67.4
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 3.8e-09 66.6 43 67.4
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 3.8e-09 66.6 65 55.4
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 3.8e-09 66.6 43 67.4
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 4.9e-09 66.2 43 65.1
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 4.9e-09 66.2 43 65.1
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 4.9e-09 66.2 55 58.2
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 4.9e-09 66.2 55 58.2
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 4.9e-09 66.2 55 58.2
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 4.9e-09 66.2 55 58.2
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 4.9e-09 66.2 43 65.1
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 4.9e-09 66.2 45 64.4
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 4.9e-09 66.2 43 67.4
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 4.9e-09 66.2 43 67.4
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 6.4e-09 65.9 43 65.1
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 6.4e-09 65.9 38 71.1
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 6.4e-09 65.9 38 71.1
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 6.4e-09 65.9 43 65.1
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 6.4e-09 65.9 43 65.1
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 6.4e-09 65.9 38 71.1
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 6.4e-09 65.9 43 65.1
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 6.4e-09 65.9 43 65.1
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 6.4e-09 65.9 43 65.1
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 6.4e-09 65.9 55 58.2
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 8.4e-09 65.5 43 65.1
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 8.4e-09 65.5 43 65.1
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 8.4e-09 65.5 43 65.1
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 8.4e-09 65.5 43 65.1
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 8.4e-09 65.5 43 65.1
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 8.4e-09 65.5 43 65.1
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 8.4e-09 65.5 62 54.8
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 8.4e-09 65.5 43 65.1
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 8.4e-09 65.5 43 65.1
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.1e-08 65.1 43 65.1
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.1e-08 65.1 43 65.1
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.1e-08 65.1 43 65.1
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 1.1e-08 65.1 43 65.1
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 1.4e-08 64.7 38 71.1
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 1.4e-08 64.7 38 71.1
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.9e-08 64.3 43 62.8
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 1.9e-08 64.3 43 62.8
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 1.9e-08 64.3 43 62.8
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.9e-08 64.3 38 68.4
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 1.9e-08 64.3 43 62.8
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 1.9e-08 64.3 43 62.8
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.9e-08 64.3 43 62.8
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 1.9e-08 64.3 43 67.4
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 2.4e-08 63.9 43 62.8
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.4e-08 63.9 43 62.8
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.4e-08 63.9 43 62.8
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 2.4e-08 63.9 43 62.8
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 2.4e-08 63.9 38 71.1
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 2.4e-08 63.9 38 68.4
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 3.2e-08 63.5 38 71.1
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 3.2e-08 63.5 38 68.4
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 3.2e-08 63.5 43 62.8
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 4.2e-08 63.2 43 62.8
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 4.2e-08 63.2 43 62.8
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 4.2e-08 63.2 43 62.8
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 5.4e-08 62.8 38 65.8
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 5.4e-08 62.8 38 65.8
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 1.2e-07 61.6 43 62.8
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 1.6e-07 61.2 55 52.7
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 3.5e-07 60.1 48 58.3
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 4.6e-07 59.7 61 49.2
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 1.0e-06 58.5 151 28.5
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 2.3e-06 57.4 35 68.6
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 6.7e-06 55.8 43 58.1


User provided reference genes

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