Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 2.7e-239 831.6 430 100.0
Mapoly0147s0002 Marchantia polymorpha HOM05D020945 ORTHO05D251377 2.4e-155 552.7 383 73.4
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.7e-153 546.6 361 76.2
Mapoly0147s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253211 3.4e-141 505.8 396 65.9
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 5.4e-139 498.4 395 66.1
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.5e-120 437.2 398 57.0
Mapoly0147s0044 Marchantia polymorpha HOM05D000242 ORTHO05D000700 5.6e-120 435.3 398 56.8
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 9.5e-120 434.5 335 66.9
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 2.0e-117 426.8 240 85.8
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 1.1e-107 394.4 315 62.9
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.6e-27 126.3 291 33.3
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.2e-26 125.2 291 31.6
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.8e-25 121.3 314 29.9
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 6.8e-25 119.4 308 30.5
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.9e-23 113.2 288 28.5
Mapoly0010s0128 Marchantia polymorpha HOM05D000005 ORTHO05D000239 6.4e-23 112.8 290 31.0
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 3.2e-22 110.5 293 30.0
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 7.0e-22 109.4 293 30.7
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 6.0e-21 106.3 291 31.3
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.8e-21 105.9 297 28.6
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.0e-20 103.2 306 28.1
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 8.6e-20 102.4 301 29.6
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-19 102.1 276 29.7
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.5e-19 100.9 275 29.1
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.8e-18 97.4 270 30.0
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 1.8e-17 94.7 290 30.0
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.8e-17 94.7 264 30.3
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 3.1e-17 94.0 290 29.7
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 3.1e-17 94.0 290 29.7
Mapoly0067s0037 Marchantia polymorpha HOM05D011080 ORTHO05D000239 4.0e-17 93.6 314 28.7
Mapoly0110s0039 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.4e-16 90.5 320 26.2
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.9e-14 84.7 205 33.2
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.2e-14 84.0 262 30.2
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 5.4e-14 83.2 203 30.0
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 4.6e-13 80.1 291 29.6
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 7.8e-13 79.3 145 33.8
Mapoly0119s0056 Marchantia polymorpha HOM05D011080 ORTHO05D000239 8.6e-12 75.9 308 26.9
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 9.5e-11 72.4 173 29.5
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 1.6e-10 71.6 154 33.8
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 2.1e-10 71.2 316 26.6
Mapoly0074s0030 Marchantia polymorpha HOM05D011080 ORTHO05D254173 4.7e-10 70.1 299 25.1
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 8.1e-10 69.3 247 26.7
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 1.4e-09 68.6 193 29.5
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 1.8e-09 68.2 161 32.9
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 4.0e-09 67.0 151 33.1
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 5.2e-09 66.6 151 31.8
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 6.8e-09 66.2 279 25.8
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 1.2e-08 65.5 192 31.8
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 1.2e-08 65.5 109 37.6
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 1.5e-08 65.1 315 26.7
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 1.5e-08 65.1 302 27.8
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 1.5e-08 65.1 279 27.2
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 2.0e-08 64.7 312 27.6
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 2.0e-08 64.7 151 32.5
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 2.0e-08 64.7 151 31.8
Zm00001eb006390 Zea mays HOM05D004348 ORTHO05D006191 2.0e-08 64.7 149 33.6
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 2.6e-08 64.3 109 35.8
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 2.6e-08 64.3 151 32.5
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 2.6e-08 64.3 340 24.7
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 2.6e-08 64.3 320 24.1
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 3.4e-08 63.9 151 31.8
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 4.4e-08 63.5 331 24.2
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 4.4e-08 63.5 225 28.4
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 4.4e-08 63.5 286 26.6
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 4.4e-08 63.5 274 26.6
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 5.8e-08 63.2 109 35.8
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 5.8e-08 63.2 162 29.6
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 5.8e-08 63.2 312 26.9
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 5.8e-08 63.2 288 28.5
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 7.6e-08 62.8 346 25.1
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 7.6e-08 62.8 310 25.2
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 9.9e-08 62.4 246 26.8
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 9.9e-08 62.4 151 32.5
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 9.9e-08 62.4 151 31.8
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 1.3e-07 62.0 297 26.9
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 1.7e-07 61.6 340 24.7
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 1.7e-07 61.6 340 24.7
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 1.7e-07 61.6 152 30.3
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 1.7e-07 61.6 272 26.5
Pp3c2_1120 Physcomitrium patens HOM05D002195 ORTHO05D317592 1.7e-07 61.6 171 26.3
SMO144G0009 Selaginella moellendorffii HOM05D004348 ORTHO05D006191 1.7e-07 61.6 153 28.1
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 1.7e-07 61.6 276 29.0
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 2.2e-07 61.2 340 24.7
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 2.2e-07 61.2 151 29.8
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 2.2e-07 61.2 152 28.9
Mapoly0120s0017 Marchantia polymorpha HOM05D011080 ORTHO05D000239 2.2e-07 61.2 225 26.7
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 2.9e-07 60.8 271 25.8
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 2.9e-07 60.8 271 25.8
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 2.9e-07 60.8 151 28.5
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 3.7e-07 60.5 109 33.9
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 3.7e-07 60.5 244 26.2
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 3.7e-07 60.5 158 29.7
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 4.9e-07 60.1 151 30.5
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 4.9e-07 60.1 220 27.3
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 4.9e-07 60.1 340 24.4
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 4.9e-07 60.1 152 28.3
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 6.4e-07 59.7 160 31.2
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 6.4e-07 59.7 276 29.0
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 6.4e-07 59.7 161 28.6
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 6.4e-07 59.7 271 26.2
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 8.4e-07 59.3 271 25.8
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 1.4e-06 58.5 326 24.5
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 1.4e-06 58.5 275 25.5
Mapoly0120s0038 Marchantia polymorpha HOM05D011080 ORTHO05D256860 1.4e-06 58.5 254 26.4
Mapoly0120s0043 Marchantia polymorpha HOM05D011080 ORTHO05D255325 1.4e-06 58.5 248 27.8
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 1.4e-06 58.5 110 32.7
Cre16.g686501 Chlamydomonas reinhardtii HOM05D004348 ORTHO05D006191 1.9e-06 58.2 287 24.7
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 1.9e-06 58.2 281 24.6
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 1.9e-06 58.2 179 29.1
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 2.4e-06 57.8 221 26.7
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 3.2e-06 57.4 221 26.2
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 3.2e-06 57.4 154 31.2
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 3.2e-06 57.4 151 28.5
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 4.1e-06 57.0 151 29.8
Sc02g0006980 Simmondsia chinensis HOM05D004348 ORTHO05D006191 5.4e-06 56.6 151 27.2
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 5.4e-06 56.6 231 26.0
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 5.4e-06 56.6 231 26.0
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 7.1e-06 56.2 150 28.7
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 9.2e-06 55.8 152 29.6
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 9.2e-06 55.8 202 26.7


User provided reference genes

Program Settings