Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0346s0002 Marchantia polymorpha HOM05D020945 ORTHO05D254421 5.3e-240 833.9 420 100.0
Mapoly0147s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253211 7.5e-178 627.5 423 77.5
Mapoly0147s0002 Marchantia polymorpha HOM05D020945 ORTHO05D251377 3.8e-145 518.8 432 66.7
Mapoly0397s0001 Marchantia polymorpha HOM05D020945 ORTHO05D253181 6.9e-139 498.0 395 66.1
Mapoly0147s0004 Marchantia polymorpha HOM05D000242 ORTHO05D000700 1.5e-122 443.7 356 62.9
Mapoly0147s0041 Marchantia polymorpha HOM05D000242 ORTHO05D000700 7.2e-112 408.3 378 57.1
Mapoly0147s0044 Marchantia polymorpha HOM05D000242 ORTHO05D000700 4.6e-111 405.6 401 54.4
Mapoly0020s0126 Marchantia polymorpha HOM05D000242 ORTHO05D000700 3.0e-102 376.3 327 60.2
Mapoly0108s0045 Marchantia polymorpha HOM05D020945 ORTHO05D000713 1.1e-96 357.8 315 57.8
Mapoly2448s0001 Marchantia polymorpha HOM05D020945 ORTHO05D251686 4.1e-91 339.3 238 70.6
Mapoly0064s0093 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.1e-22 112.1 290 31.4
Mapoly0031s0035 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.2e-21 108.6 286 27.6
Mapoly0041s0095 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.4e-21 107.1 296 29.1
Mapoly0893s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.9e-20 104.0 290 27.6
Mapoly0107s0021 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.8e-20 103.6 289 28.0
Mapoly0062s0120 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.9e-20 103.2 287 27.5
Mapoly0067s0038 Marchantia polymorpha HOM05D000005 ORTHO05D000239 8.4e-20 102.4 292 28.8
Mapoly0007s0015 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.9e-19 101.3 292 28.4
Mapoly1060s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.9e-19 101.3 275 27.6
Mapoly0049s0015 Marchantia polymorpha HOM05D004348 ORTHO05D000239 2.4e-19 100.9 276 28.6
Mapoly0637s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 4.2e-19 100.1 283 28.3
Mapoly0067s0036 Marchantia polymorpha HOM05D011080 ORTHO05D000239 7.1e-19 99.4 305 30.2
Mapoly0108s0037 Marchantia polymorpha HOM05D029023 ORTHO05D030122 3.5e-18 97.1 265 29.8
Mapoly0555s0001 Marchantia polymorpha HOM05D029023 ORTHO05D030122 3.5e-18 97.1 265 29.8
Mapoly0052s0114 Marchantia polymorpha HOM05D029023 ORTHO05D030122 4.6e-18 96.7 265 30.2
Mapoly0053s0005 Marchantia polymorpha HOM05D011080 ORTHO05D000239 3.9e-17 93.6 333 27.6
Mapoly0200s0002 Marchantia polymorpha HOM05D004348 ORTHO05D000239 3.9e-17 93.6 305 27.5
Mapoly2546s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.6e-15 88.2 263 28.1
Mapoly0010s0128 Marchantia polymorpha HOM05D000005 ORTHO05D000239 1.1e-14 85.5 315 26.0
Mapoly0110s0039 Marchantia polymorpha HOM05D011080 ORTHO05D000239 6.9e-14 82.8 304 25.0
Mapoly0016s0164 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.3e-12 78.6 214 27.6
Mapoly0064s0096 Marchantia polymorpha HOM05D004348 ORTHO05D000239 1.3e-12 78.6 204 30.4
Os03g0185500 Oryza sativa ssp. japonica HOM05D004348 ORTHO05D006191 5.5e-11 73.2 326 26.1
A01p04110 Brassica napus HOM05D004348 ORTHO05D006191 9.3e-11 72.4 332 26.5
C01p04470 Brassica napus HOM05D004348 ORTHO05D006191 9.3e-11 72.4 332 26.5
BolC1t00433H Brassica oleracea HOM05D004348 ORTHO05D006191 9.3e-11 72.4 332 26.5
BraA01t00399Z Brassica rapa HOM05D004348 ORTHO05D006191 9.3e-11 72.4 332 26.5
Mapoly0119s0056 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.2e-10 72.0 302 25.8
Mapoly0200s0001 Marchantia polymorpha HOM05D004348 ORTHO05D000239 7.9e-10 69.3 259 26.3
Sp7g32110 Schrenkiella parvula HOM05D004348 ORTHO05D006191 1.0e-09 68.9 306 26.8
Mapoly0074s0030 Marchantia polymorpha HOM05D011080 ORTHO05D254173 1.3e-09 68.6 319 25.7
Pp3c24_4860 Physcomitrium patens HOM05D004348 ORTHO05D000239 1.3e-09 68.6 143 30.8
VMungo0647G0261 Vigna mungo HOM05D004348 ORTHO05D006191 1.3e-09 68.6 305 26.2
Aa31LG2G16180 Aethionema arabicum HOM05D004348 ORTHO05D006191 1.8e-09 68.2 167 31.7
arahy.Tifrunner.gnm1.ann1.2EEB7P Arachis hypogaea HOM05D004348 ORTHO05D006191 2.3e-09 67.8 304 26.6
arahy.Tifrunner.gnm1.ann1.3D95JG Arachis hypogaea HOM05D004348 ORTHO05D006191 2.3e-09 67.8 304 26.6
Carub.0007s0605 Capsella rubella HOM05D004348 ORTHO05D006191 2.3e-09 67.8 290 26.6
Solyc04g079280.4 Solanum lycopersicum HOM05D004348 ORTHO05D006191 3.0e-09 67.4 226 27.4
Sopen04g032870 Solanum pennellii HOM05D004348 ORTHO05D006191 3.0e-09 67.4 226 27.4
AL7G16960 Arabidopsis lyrata HOM05D004348 ORTHO05D006191 3.9e-09 67.0 290 26.2
CsaV3_4G034150 Cucumis sativus L. HOM05D004348 ORTHO05D006191 3.9e-09 67.0 320 25.6
PGSC0003DMG400007988 Solanum tuberosum HOM05D004348 ORTHO05D006191 3.9e-09 67.0 229 27.5
CARHR242470 Cardamine hirsuta HOM05D004348 ORTHO05D006191 5.1e-09 66.6 312 25.6
Nn5g30212 Nelumbo nucifera HOM05D004348 ORTHO05D006191 6.7e-09 66.2 107 37.4
Gorai.002G131100 Gossypium raimondii HOM05D004348 ORTHO05D006191 8.7e-09 65.9 265 26.4
AUR62022445 Chenopodium quinoa HOM05D004348 ORTHO05D006191 1.1e-08 65.5 265 26.8
MD08G1105600 Malus domestica HOM05D004348 ORTHO05D006191 1.1e-08 65.5 284 27.5
Mapoly0071s0031 Marchantia polymorpha HOM05D011080 ORTHO05D000239 1.1e-08 65.5 280 24.6
RcHm_v2.0_Chr6g0307221 Rosa chinensis HOM05D004348 ORTHO05D006191 1.1e-08 65.5 336 24.4
AUR62039313 Chenopodium quinoa HOM05D004348 ORTHO05D006191 1.5e-08 65.1 265 26.4
ClCG05G019730 Citrullus lanatus HOM05D004348 ORTHO05D006191 1.5e-08 65.1 265 25.7
FvH4_2g34840 Fragaria vesca HOM05D004348 ORTHO05D006191 1.5e-08 65.1 286 25.2
Gohir.D01G106800 Gossypium hirsutum HOM05D004348 ORTHO05D006191 1.5e-08 65.1 265 26.4
MD15G1086600 Malus domestica HOM05D004348 ORTHO05D006191 1.5e-08 65.1 336 26.8
AT4G34310 Arabidopsis thaliana HOM05D004348 ORTHO05D006191 1.9e-08 64.7 226 27.4
Prupe.1G440200 Prunus persica HOM05D004348 ORTHO05D006191 1.9e-08 64.7 275 25.1
SEGI_07910 Sequoiadendron giganteum HOM05D004348 ORTHO05D006191 1.9e-08 64.7 194 27.8
Atru.chr1.1668 Acer truncatum HOM05D004348 ORTHO05D006191 2.5e-08 64.3 307 26.1
Gohir.A01G118500 Gossypium hirsutum HOM05D004348 ORTHO05D006191 2.5e-08 64.3 265 26.4
Pp3c17_5660 Physcomitrium patens HOM05D004348 ORTHO05D006191 2.5e-08 64.3 107 33.6
THA.LOC104806947 Tarenaya hassleriana HOM05D004348 ORTHO05D006191 2.5e-08 64.3 224 27.7
Thhalv10024246m.g Eutrema salsugineum HOM05D004348 ORTHO05D006191 3.3e-08 63.9 348 25.3
FAN27G3414 Fragaria x ananassa HOM05D004348 ORTHO05D006191 3.3e-08 63.9 245 26.1
Sed0015301 Sechium edule HOM05D004348 ORTHO05D006191 3.3e-08 63.9 224 27.2
Thecc.08G012500 Theobroma cacao HOM05D004348 ORTHO05D006191 3.3e-08 63.9 270 28.5
GSVIVG01009553001 Vitis vinifera HOM05D004348 ORTHO05D006191 3.3e-08 63.9 298 25.5
CAN.G371.44 Capsicum annuum HOM05D004348 ORTHO05D006191 4.3e-08 63.5 226 27.0
MELO3C016737.2 Cucumis melo HOM05D004348 ORTHO05D006191 5.6e-08 63.2 204 27.9
Dinv35980 Davidia involucrata HOM05D004348 ORTHO05D006191 5.6e-08 63.2 218 28.0
ATR1159G040 Amborella trichopoda HOM05D004348 ORTHO05D006191 7.4e-08 62.8 242 27.3
Aqoxy5G01277 Aquilegia oxysepala HOM05D004348 ORTHO05D006191 7.4e-08 62.8 107 35.5
Peaxi162Scf00528g00825 Petunia axillaris HOM05D004348 ORTHO05D006191 7.4e-08 62.8 305 24.3
Phvul.001G020000 Phaseolus vulgaris HOM05D004348 ORTHO05D006191 7.4e-08 62.8 227 27.8
CSS0012651 Camellia sinensis var. sinensis HOM05D004348 ORTHO05D006191 9.6e-08 62.4 334 25.1
Sabra14G0024200 Salix brachista HOM05D004348 ORTHO05D006191 9.6e-08 62.4 156 29.5
Sed0012719 Sechium edule HOM05D004348 ORTHO05D006191 9.6e-08 62.4 322 25.5
Migut.N02696 Erythranthe guttata HOM05D004348 ORTHO05D006191 1.3e-07 62.0 303 25.4
Lalb_Chr24g0399211 Lupinus albus HOM05D004348 ORTHO05D006191 1.3e-07 62.0 294 25.5
PSO675G6987 Papaver somniferum HOM05D004348 ORTHO05D006191 1.3e-07 62.0 212 26.9
Atru.chr13.637 Acer truncatum HOM05D004348 ORTHO05D006191 1.6e-07 61.6 305 25.2
ECA247G1923 Erigeron canadensis HOM05D004348 ORTHO05D006191 2.1e-07 61.2 266 26.3
Eucgr.F02367 Eucalyptus grandis HOM05D004348 ORTHO05D006191 2.1e-07 61.2 265 24.9
Manes.05G171200 Manihot esculenta HOM05D004348 ORTHO05D006191 2.8e-07 60.8 325 23.7
Pp3c2_1120 Physcomitrium patens HOM05D002195 ORTHO05D317592 2.8e-07 60.8 282 22.0
Pp3c9_17530 Physcomitrium patens HOM05D031884 ORTHO05D311885 2.8e-07 60.8 113 32.7
Medtr1g019960 Medicago truncatula HOM05D004348 ORTHO05D006191 3.7e-07 60.5 148 30.4
MSTRG.22274 Avicennia marina HOM05D004348 ORTHO05D006191 4.8e-07 60.1 152 30.3
Duzib093G0393 Durio zibethinus HOM05D004348 ORTHO05D006191 4.8e-07 60.1 148 31.8
Glyma.14G081100 Glycine max HOM05D004348 ORTHO05D006191 4.8e-07 60.1 198 26.3
Glyma.17G244300 Glycine max HOM05D004348 ORTHO05D006191 4.8e-07 60.1 183 29.5
Lj4A53T53 Lonicera japonica HOM05D004348 ORTHO05D006191 4.8e-07 60.1 330 25.2
Mapoly0033s0109 Marchantia polymorpha HOM05D004348 ORTHO05D006191 4.8e-07 60.1 149 30.9
Cfa018516 Carpinus fangiana HOM05D004348 ORTHO05D006191 6.2e-07 59.7 266 25.9
ECA232G4920 Erigeron canadensis HOM05D004348 ORTHO05D006191 6.2e-07 59.7 148 29.1
EL10Ac1g01783 Beta vulgaris HOM05D004348 ORTHO05D006191 8.2e-07 59.3 265 26.0
TPR.G13698 Trifolium pratense HOM05D004348 ORTHO05D006191 8.2e-07 59.3 150 28.7
TAR625G1112 Trochodendron aralioides HOM05D004348 ORTHO05D006191 8.2e-07 59.3 107 35.5
Cc10_g04460 Coffea canephora HOM05D004348 ORTHO05D006191 1.1e-06 58.9 148 29.7
COL.COLO4_26463 Corchorus olitorius HOM05D004348 ORTHO05D006191 1.1e-06 58.9 268 27.2
Psat6g012000 Pisum sativum HOM05D004348 ORTHO05D006191 1.1e-06 58.9 148 29.1
QL02p005708 Quercus lobata HOM05D004348 ORTHO05D006191 1.1e-06 58.9 277 24.5
Ciclev10000175m.g Citrus clementina HOM05D004348 ORTHO05D006191 1.8e-06 58.2 322 23.3
DCAR_020931 Daucus carota HOM05D004348 ORTHO05D006191 1.8e-06 58.2 291 26.1
HanXRQChr02g0038751 Helianthus annuus HOM05D004348 ORTHO05D006191 1.8e-06 58.2 271 25.1
Lsat_1_v5_gn_4_124060 Lactuca sativa HOM05D004348 ORTHO05D006191 1.8e-06 58.2 268 25.7
HanXRQChr16g0507461 Helianthus annuus HOM05D004348 ORTHO05D006191 2.4e-06 57.8 148 29.1
Potri.014G034100 Populus trichocarpa HOM05D004348 ORTHO05D006191 2.4e-06 57.8 197 25.4
CiPaw.16G046500 Carya illinoinensis HOM05D004348 ORTHO05D006191 3.1e-06 57.4 225 25.8
vmacro21553 Vaccinium macrocarpon HOM05D004348 ORTHO05D006191 3.1e-06 57.4 107 33.6
Cpa.g.c24415.13 Carica papaya HOM05D004348 ORTHO05D006191 4.0e-06 57.0 339 24.5
Nitab4.5_0000068g0550 Nicotiana tabacum HOM05D004348 ORTHO05D006191 4.0e-06 57.0 226 24.8
PGR031G2748 Punica granatum HOM05D004348 ORTHO05D006191 5.3e-06 56.6 208 27.4
AagrBONN_evm.TU.Sc2ySwM_344.1636 Anthoceros agrestis HOM05D004348 ORTHO05D006191 6.9e-06 56.2 151 29.8
Oeu057258.1 Olea europaea HOM05D004348 ORTHO05D006191 6.9e-06 56.2 233 25.8
Actinidia15256 Actinidia chinensis HOM05D004348 ORTHO05D006191 9.0e-06 55.8 318 24.8
Mapoly0120s0038 Marchantia polymorpha HOM05D011080 ORTHO05D256860 9.0e-06 55.8 306 23.5


User provided reference genes

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