Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.3e-134 482.3 248 100.0
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.4e-133 477.2 248 99.2
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.4e-133 477.2 248 99.2
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.4e-110 403.3 248 82.7
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 4.0e-110 401.7 248 83.9
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 4.0e-110 401.7 246 82.9
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 5.2e-110 401.4 245 83.3
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 6.7e-110 401.0 243 84.0
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 2.0e-109 399.4 246 82.9
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 3.3e-109 398.7 246 81.3
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 2.2e-108 396.0 246 82.9
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.8e-108 395.6 248 83.5
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 6.3e-108 394.4 249 81.5
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 1.1e-107 393.7 245 81.6
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.1e-107 393.7 245 81.6
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 1.4e-107 393.3 246 82.5
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.8e-107 392.9 248 82.7
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.4e-107 392.5 250 81.6
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 2.4e-107 392.5 249 81.9
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 3.1e-107 392.1 248 82.3
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 3.1e-107 392.1 246 80.9
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 3.1e-107 392.1 247 80.6
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 3.1e-107 392.1 248 81.0
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 4.1e-107 391.7 249 81.1
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 4.1e-107 391.7 246 81.3
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 4.1e-107 391.7 245 82.4
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 4.1e-107 391.7 245 81.2
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 4.1e-107 391.7 249 80.3
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.3e-107 391.3 250 81.2
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 7.0e-107 391.0 246 81.3
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 9.1e-107 390.6 248 81.0
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 1.2e-106 390.2 246 80.9
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 1.2e-106 390.2 249 79.5
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 1.6e-106 389.8 248 82.3
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 2.7e-106 389.0 249 79.9
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.5e-106 388.7 250 81.2
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 3.5e-106 388.7 248 80.6
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 3.5e-106 388.7 248 80.6
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 3.5e-106 388.7 244 81.6
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.5e-106 388.3 250 80.8
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 4.5e-106 388.3 252 81.3
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 7.7e-106 387.5 250 80.0
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 7.7e-106 387.5 246 81.3
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.0e-105 387.1 244 81.6
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.0e-105 387.1 248 80.6
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 1.3e-105 386.7 247 81.4
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.3e-105 386.7 251 80.1
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 1.3e-105 386.7 244 81.6
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.9e-105 385.6 249 79.1
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 2.9e-105 385.6 253 80.2
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 3.8e-105 385.2 248 81.0
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 3.8e-105 385.2 245 81.2
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 5.0e-105 384.8 245 81.2
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 6.5e-105 384.4 248 79.8
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 8.5e-105 384.0 248 80.2
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 1.1e-104 383.6 248 80.2
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 1.1e-104 383.6 249 78.7
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 1.5e-104 383.3 248 80.6
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 1.5e-104 383.3 248 80.6
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 1.5e-104 383.3 248 80.6
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 1.9e-104 382.9 248 80.2
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 1.9e-104 382.9 248 80.6
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.9e-104 382.9 249 79.1
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 1.9e-104 382.9 249 78.7
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.9e-104 382.9 248 79.0
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.9e-104 382.9 245 80.8
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 2.5e-104 382.5 249 79.5
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 2.5e-104 382.5 248 80.2
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 2.5e-104 382.5 249 79.9
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 4.2e-104 381.7 254 78.7
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 4.2e-104 381.7 247 80.2
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 4.2e-104 381.7 249 78.3
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 5.5e-104 381.3 245 81.2
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 7.2e-104 380.9 248 78.2
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.2e-104 380.9 249 79.9
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 9.4e-104 380.6 250 78.4
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 9.4e-104 380.6 245 80.0
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 1.6e-103 379.8 249 80.3
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.1e-103 379.4 249 79.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 2.7e-103 379.0 249 79.5
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.7e-103 379.0 247 77.7
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 4.7e-103 378.3 248 80.2
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 4.7e-103 378.3 272 74.6
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.4e-102 376.7 245 78.4
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 3.0e-102 375.6 245 80.0
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 5.2e-102 374.8 245 78.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.2e-101 373.6 244 78.3
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 1.2e-101 373.6 244 78.3
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.2e-101 373.6 244 78.3
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.2e-101 373.6 244 78.3
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 1.2e-101 373.6 244 78.3
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 1.2e-101 373.6 252 78.6
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 7.5e-101 370.9 242 80.6
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 2.8e-100 369.0 248 75.8
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 3.1e-99 365.5 229 79.9
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.1e-99 365.5 247 76.5
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.1e-99 365.2 277 71.5
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 5.4e-99 364.8 249 79.1
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.6e-97 357.8 277 70.0
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 8.6e-97 357.5 248 77.8
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 8.6e-97 357.5 248 77.8
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 7.5e-93 344.4 250 74.0
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.4e-86 323.6 191 86.4
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 7.5e-85 317.8 248 71.4
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.9e-83 313.2 251 70.5
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.7e-81 306.6 247 69.6
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 3.0e-81 305.8 247 70.9
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 3.9e-81 305.4 220 70.0
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 6.6e-81 304.7 248 67.3
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 1.1e-80 303.9 246 69.1
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 6.2e-79 298.1 223 70.9
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 2.6e-77 292.7 241 62.7
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.9e-76 288.5 268 62.7
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.5e-74 282.3 268 61.9
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.6e-74 282.0 257 61.9
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.3e-70 269.6 266 60.2
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.4e-67 260.4 250 60.8
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.9e-67 260.0 248 61.3
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.4e-67 258.5 229 62.9
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.7e-66 256.1 239 54.8
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.8e-63 246.1 239 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.9e-61 237.7 219 54.8
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.4e-60 235.0 219 53.4
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.4e-60 235.0 214 51.4
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.4e-59 233.8 239 51.0
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 2.4e-59 233.0 202 63.9
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 9.2e-59 231.1 248 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.9e-57 225.7 208 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.1e-57 225.3 220 49.5
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 8.4e-52 208.0 146 71.2
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 5.1e-49 198.7 126 76.2
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.5e-45 185.7 115 87.0
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.8e-44 182.6 115 86.1
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-28 130.6 78 82.1
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 8.7e-25 118.2 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 3.7e-23 112.8 59 86.4
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.4e-22 110.9 71 84.5
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 2.9e-20 103.2 74 74.3
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 8.5e-20 101.7 95 56.8
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-19 100.5 86 72.1
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 8.8e-09 65.1 61 55.7
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 8.2e-07 58.5 30 76.7


User provided reference genes

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