Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 0.0e+00 1731.8 1015 100.0
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 8.4e-58 229.9 293 47.4
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 8.5e-50 203.4 363 38.0
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 7.9e-40 170.2 236 40.7
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 1.8e-39 169.1 234 40.6
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 1.8e-39 169.1 260 41.2
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 8.8e-39 166.8 226 40.7
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.1e-38 166.4 219 42.5
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 1.5e-38 166.0 237 37.1
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.5e-38 166.0 219 42.5
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 2.0e-38 165.6 217 42.4
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 3.3e-38 164.9 217 41.9
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 3.3e-38 164.9 218 40.8
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 7.4e-38 163.7 220 42.3
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 7.4e-38 163.7 217 41.9
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 7.4e-38 163.7 220 41.4
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 9.7e-38 163.3 223 41.3
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 1.7e-37 162.5 223 41.3
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 1.7e-37 162.5 222 40.5
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 2.2e-37 162.2 219 40.2
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 2.2e-37 162.2 222 39.6
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 2.2e-37 162.2 219 39.3
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 2.8e-37 161.8 217 41.0
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 2.8e-37 161.8 222 39.2
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 2.8e-37 161.8 225 40.9
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 3.7e-37 161.4 221 39.4
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 3.7e-37 161.4 222 40.5
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 3.7e-37 161.4 221 41.2
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 4.8e-37 161.0 217 40.1
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 6.3e-37 160.6 221 38.5
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 6.3e-37 160.6 221 39.8
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 1.8e-36 159.1 262 37.0
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 1.8e-36 159.1 223 40.8
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.8e-36 159.1 220 41.4
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 1.8e-36 159.1 276 35.9
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.8e-36 159.1 217 39.2
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 1.8e-36 159.1 229 41.9
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 1.8e-36 159.1 224 37.5
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.8e-36 159.1 218 39.0
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 2.4e-36 158.7 220 40.5
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 3.1e-36 158.3 264 37.1
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 4.1e-36 157.9 263 35.7
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 4.1e-36 157.9 218 40.4
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 4.1e-36 157.9 279 33.0
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 9.1e-36 156.8 220 40.5
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 9.1e-36 156.8 217 38.2
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.2e-35 156.4 244 40.6
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 2.6e-35 155.2 226 38.5
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 2.6e-35 155.2 217 40.6
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 2.6e-35 155.2 221 40.7
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 3.4e-35 154.8 220 41.8
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 5.9e-35 154.1 231 37.7
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 5.9e-35 154.1 217 37.8
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 1.0e-34 153.3 222 38.7
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 1.3e-34 152.9 219 38.8
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 1.7e-34 152.5 223 38.1
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 2.2e-34 152.1 223 39.0
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 2.2e-34 152.1 222 40.1
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 2.2e-34 152.1 222 40.1
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 2.2e-34 152.1 227 37.0
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 2.2e-34 152.1 217 38.7
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 1.1e-33 149.8 233 34.8
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 1.4e-33 149.4 219 37.0
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 1.4e-33 149.4 219 38.4
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 2.5e-33 148.7 222 36.5
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 3.2e-33 148.3 234 37.6
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 7.2e-33 147.1 217 37.3
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 7.2e-33 147.1 217 37.8
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 7.2e-33 147.1 220 35.9
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 9.4e-33 146.7 221 35.7
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 9.4e-33 146.7 240 37.1
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 9.4e-33 146.7 221 37.6
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 1.2e-32 146.4 226 38.9
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 1.6e-32 146.0 233 34.8
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 1.6e-32 146.0 233 34.3
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 3.6e-32 144.8 219 36.5
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 3.6e-32 144.8 246 34.6
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 6.1e-32 144.1 217 35.9
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 7.9e-32 143.7 211 39.3
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 1.4e-31 142.9 219 36.1
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 2.3e-31 142.1 245 34.7
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 3.0e-31 141.7 217 36.4
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 5.2e-31 141.0 171 41.5
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 5.2e-31 141.0 221 37.1
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 3.3e-30 138.3 218 35.8
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 5.7e-30 137.5 217 33.6
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 6.3e-29 134.0 228 32.9
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 8.2e-29 133.7 234 36.3
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 1.8e-28 132.5 199 36.7
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 1.8e-28 132.5 218 35.3
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 1.2e-27 129.8 217 37.3
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.2e-27 129.8 199 36.2
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.0e-26 126.7 203 38.4
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.2e-26 125.6 204 35.8
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 2.2e-26 125.6 199 36.7
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 1.1e-25 123.2 217 33.2
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 2.5e-25 122.1 251 32.7
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 4.2e-25 121.3 210 38.1
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 2.1e-24 119.0 204 34.3
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 1.4e-23 116.3 194 36.1
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 6.7e-23 114.0 201 34.8
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.5e-22 112.8 214 30.8
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 1.1e-20 106.7 146 37.7
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 4.1e-20 104.8 165 38.2
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 2.2e-18 99.0 180 35.0
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 2.9e-18 98.6 233 30.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 3.8e-18 98.2 246 28.5
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 6.1e-16 90.9 73 52.1
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 6.1e-16 90.9 145 37.9
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 8.3e-13 80.5 100 44.0
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 5.4e-12 77.8 107 41.1
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 9.1e-12 77.0 308 27.3
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 4.5e-11 74.7 101 39.6
Cre03.g200651 Chlamydomonas reinhardtii HOM05D006625 ORTHO05D008060 1.7e-10 72.8 302 24.2
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 3.8e-10 71.6 193 28.5
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 1.9e-09 69.3 161 32.3
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 3.2e-09 68.6 193 26.9
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 1.8e-07 62.8 83 41.0
Sed0012696 Sechium edule HOM05D007892 ORTHO05D009211 1.8e-07 62.8 280 28.2
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 2.6e-06 58.9 40 60.0
Cc05_g11770 Coffea canephora HOM05D007892 ORTHO05D009211 4.4e-06 58.2 73 52.1
Lsat_1_v5_gn_4_112441 Lactuca sativa HOM05D002798 ORTHO05D003052 4.4e-06 58.2 108 32.4


User provided reference genes

Program Settings