Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0224s0002 Marchantia polymorpha HOM05D004054 ORTHO05D004945 0.0e+00 1742.2 879 100.0
Pp3c16_680 Physcomitrium patens HOM05D004054 ORTHO05D004945 5.2e-197 692.2 805 50.2
SEGI_39580 Sequoiadendron giganteum HOM05D004054 ORTHO05D004945 2.1e-177 627.1 923 44.1
AagrBONN_evm.TU.Sc2ySwM_228.4114 Anthoceros agrestis HOM05D004054 ORTHO05D004945 2.5e-151 540.4 742 46.2
Actinidia05393 Actinidia chinensis HOM05D004054 ORTHO05D004945 3.3e-143 513.5 840 40.2
ATR0564G248 Amborella trichopoda HOM05D004054 ORTHO05D004945 1.6e-142 511.1 894 39.0
TAR362G0462 Trochodendron aralioides HOM05D004054 ORTHO05D004945 1.4e-141 508.1 876 39.0
Thecc.02G355300 Theobroma cacao HOM05D004054 ORTHO05D004945 1.5e-140 504.6 840 38.7
Rhsim01G0215700 Rhododendron simsii HOM05D004054 ORTHO05D004945 4.5e-140 503.1 868 39.5
MBI11_g00106_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 5.8e-140 502.7 836 40.8
Ciclev10030693m.g Citrus clementina HOM05D004054 ORTHO05D004945 1.0e-139 501.9 878 38.6
Aqoxy5G00175 Aquilegia oxysepala HOM05D004054 ORTHO05D004945 4.2e-138 496.5 851 38.8
Sopen05g002990 Solanum pennellii HOM05D004054 ORTHO05D004945 7.1e-138 495.7 830 38.6
Cfa009037 Carpinus fangiana HOM05D004054 ORTHO05D004945 1.2e-137 495.0 858 38.5
SMO119G0368 Selaginella moellendorffii HOM05D004054 ORTHO05D004945 3.0e-136 490.3 653 45.0
QL03p065666 Quercus lobata HOM05D004054 ORTHO05D004945 3.9e-136 490.0 825 39.2
GSVIVG01036940001 Vitis vinifera HOM05D004054 ORTHO05D004945 1.1e-135 488.4 858 38.3
MD13G1079000 Malus domestica HOM05D004054 ORTHO05D004945 1.9e-135 487.6 855 38.8
Gorai.013G077900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.6e-134 484.6 899 36.7
Peaxi162Scf00209g00326 Petunia axillaris HOM05D004054 ORTHO05D004945 4.8e-134 483.0 938 36.6
MSTRG.671 Avicennia marina HOM05D004054 ORTHO05D004945 1.8e-133 481.1 907 36.3
Gohir.D13G068400 Gossypium hirsutum HOM05D004054 ORTHO05D004945 1.8e-133 481.1 899 36.6
Gohir.A13G052300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.9e-133 479.2 901 36.3
Prupe.1G267800 Prunus persica HOM05D004054 ORTHO05D004945 6.9e-133 479.2 898 37.3
FAN22G1878 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.0e-132 477.6 858 37.6
FAN17G1509 Fragaria x ananassa HOM05D004054 ORTHO05D004945 2.6e-132 477.2 845 37.9
Lsat_1_v5_gn_8_54080 Lactuca sativa HOM05D004054 ORTHO05D004945 2.6e-132 477.2 862 39.1
GSVIVG01020074001 Vitis vinifera HOM05D004054 ORTHO05D004945 3.4e-132 476.9 851 38.1
MBI17_g39912_MAGBIO Magnolia biondii HOM05D004054 ORTHO05D004945 5.9e-132 476.1 838 38.4
Migut.L01344 Erythranthe guttata HOM05D004054 ORTHO05D004945 1.3e-131 474.9 864 37.8
FAN12G3951 Fragaria x ananassa HOM05D004054 ORTHO05D004945 1.3e-131 474.9 844 37.6
RcHm_v2.0_Chr4g0440641 Rosa chinensis HOM05D004054 ORTHO05D004945 3.8e-131 473.4 857 37.0
Duzib268G1532 Durio zibethinus HOM05D004054 ORTHO05D004945 5.0e-131 473.0 905 36.6
FAN07G1439 Fragaria x ananassa HOM05D004054 ORTHO05D004945 5.0e-131 473.0 857 37.0
PSO832G3945 Papaver somniferum HOM05D004054 ORTHO05D004945 5.0e-131 473.0 834 37.2
FvH4_4g31960 Fragaria vesca HOM05D004054 ORTHO05D004945 4.2e-130 469.9 845 37.0
RcHm_v2.0_Chr1g0353921 Rosa chinensis HOM05D004054 ORTHO05D004945 4.2e-130 469.9 858 37.3
COL.COLO4_07923 Corchorus olitorius HOM05D004054 ORTHO05D004945 1.2e-129 468.4 852 37.6
Nitab4.5_0009649g0020 Nicotiana tabacum HOM05D004054 ORTHO05D004945 1.6e-129 468.0 881 36.9
PGR102G2139 Punica granatum HOM05D004054 ORTHO05D004945 4.6e-129 466.5 834 38.4
Cc11_g13490 Coffea canephora HOM05D004054 ORTHO05D004945 7.9e-129 465.7 824 38.0
MD16G1078700 Malus domestica HOM05D004054 ORTHO05D004945 1.3e-128 464.9 804 39.2
RcHm_v2.0_Chr1g0331881 Rosa chinensis HOM05D004054 ORTHO05D004945 3.9e-128 463.4 863 37.0
PSO764G0096 Papaver somniferum HOM05D004054 ORTHO05D004945 5.1e-128 463.0 861 36.1
Duzib248G1634 Durio zibethinus HOM05D004054 ORTHO05D004945 6.7e-128 462.6 810 38.1
Carub.0003s1763 Capsella rubella HOM05D004054 ORTHO05D004945 1.5e-127 461.5 861 37.7
Sc11g0001680 Simmondsia chinensis HOM05D004054 ORTHO05D004945 1.9e-127 461.1 829 36.9
TWI36G0714 Tripterygium wilfordii HOM05D004054 ORTHO05D004945 4.3e-127 459.9 907 35.1
ECA247G4086 Erigeron canadensis HOM05D004054 ORTHO05D004945 7.4e-127 459.1 840 35.8
Hund25271 Selenicereus undatus HOM05D004054 ORTHO05D004945 7.4e-127 459.1 833 36.9
Potri.010G033900 Populus trichocarpa HOM05D004054 ORTHO05D004945 2.8e-126 457.2 884 36.9
SGA_v2.0_scaffold302G47866 Striga asiatica HOM05D004054 ORTHO05D004945 2.8e-126 457.2 871 36.4
Glyma.18G126000 Glycine max HOM05D004054 ORTHO05D004945 4.8e-126 456.4 846 37.4
Sp3g16020 Schrenkiella parvula HOM05D004054 ORTHO05D004945 6.3e-126 456.1 853 36.8
Thhalv10020058m.g Eutrema salsugineum HOM05D004054 ORTHO05D004945 1.1e-125 455.3 849 36.9
Eucgr.B03410 Eucalyptus grandis HOM05D004054 ORTHO05D004945 2.4e-125 454.1 823 36.9
THA.LOC104820344 Tarenaya hassleriana HOM05D004054 ORTHO05D004945 4.1e-125 453.4 909 37.2
AL3G31070 Arabidopsis lyrata HOM05D004054 ORTHO05D004945 1.2e-124 451.8 864 36.7
Oeu011693.1 Olea europaea HOM05D004054 ORTHO05D004945 1.5e-124 451.4 807 37.7
Haze_12066 Corylus avellana HOM05D004054 ORTHO05D004945 2.6e-124 450.7 921 35.2
AT3G17900 Arabidopsis thaliana HOM05D004054 ORTHO05D004945 3.4e-124 450.3 862 36.5
DCAR_027382 Daucus carota HOM05D004054 ORTHO05D004945 4.5e-124 449.9 901 34.4
C03p49280 Brassica napus HOM05D004054 ORTHO05D004945 7.7e-124 449.1 859 36.8
BraA03t13202Z Brassica rapa HOM05D004054 ORTHO05D004945 1.0e-123 448.7 862 36.8
BcaB04g20809 Brassica carinata HOM05D004054 ORTHO05D004945 1.7e-123 448.0 862 37.5
CsaV3_5G032370 Cucumis sativus L. HOM05D004054 ORTHO05D004945 6.5e-123 446.0 860 36.4
BcaC09g48754 Brassica carinata HOM05D004054 ORTHO05D004945 1.1e-122 445.3 907 36.4
HanXRQChr12g0369801 Helianthus annuus HOM05D004054 ORTHO05D004945 1.1e-122 445.3 837 36.7
Gorai.008G182900 Gossypium raimondii HOM05D004054 ORTHO05D004945 1.4e-122 444.9 899 35.3
A01p36490 Brassica napus HOM05D004054 ORTHO05D004945 1.9e-122 444.5 874 36.2
Glyma.08G296300 Glycine max HOM05D004054 ORTHO05D004945 1.9e-122 444.5 862 35.6
Sed0026408 Sechium edule HOM05D004054 ORTHO05D004945 1.9e-122 444.5 835 36.4
Gohir.D12G170300 Gossypium hirsutum HOM05D004054 ORTHO05D004945 2.5e-122 444.1 823 36.5
CARHR093230 Cardamine hirsuta HOM05D004054 ORTHO05D004945 3.2e-122 443.7 864 36.1
Nitab4.5_0008717g0030 Nicotiana tabacum HOM05D004054 ORTHO05D004945 3.2e-122 443.7 882 36.6
Hma1.2p1_1545F.1_g289900 Hydrangea macrophylla HOM05D004054 ORTHO05D004945 5.5e-122 443.0 793 38.0
C01p46250 Brassica napus HOM05D004054 ORTHO05D004945 7.2e-122 442.6 860 37.1
Oeu028539.1 Olea europaea HOM05D004054 ORTHO05D004945 9.4e-122 442.2 937 34.6
BolC1t04586H Brassica oleracea HOM05D004054 ORTHO05D004945 1.2e-121 441.8 860 37.1
Phvul.003G069800 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.2e-121 441.8 866 35.8
BolC3t17216H Brassica oleracea HOM05D004054 ORTHO05D004945 2.7e-121 440.7 860 36.3
CSS0048330 Camellia sinensis var. sinensis HOM05D004054 ORTHO05D004945 2.7e-121 440.7 841 37.1
vmacro07429 Vaccinium macrocarpon HOM05D004054 ORTHO05D004945 3.6e-121 440.3 896 36.2
Dinv24955 Davidia involucrata HOM05D004054 ORTHO05D004945 6.1e-121 439.5 717 39.7
Nn3g19739 Nelumbo nucifera HOM05D004054 ORTHO05D004945 7.9e-121 439.1 762 39.0
BraA01t03713Z Brassica rapa HOM05D004054 ORTHO05D004945 1.0e-120 438.7 877 35.8
Ca_22853_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 2.3e-120 437.6 862 35.4
TPR.G33257 Trifolium pratense HOM05D004054 ORTHO05D004945 5.1e-120 436.4 827 36.5
ClCG05G024580 Citrullus lanatus HOM05D004054 ORTHO05D004945 6.7e-120 436.0 920 34.9
Lalb_Chr16g0392581 Lupinus albus HOM05D004054 ORTHO05D004945 6.7e-120 436.0 860 35.5
AUR62026447 Chenopodium quinoa HOM05D004054 ORTHO05D004945 8.8e-120 435.6 795 36.1
BcaB04g18970 Brassica carinata HOM05D004054 ORTHO05D004945 2.0e-119 434.5 862 36.7
Medtr8g469270 Medicago truncatula HOM05D004054 ORTHO05D004945 2.0e-119 434.5 874 35.4
VMungo0251G1664 Vigna mungo HOM05D004054 ORTHO05D004945 2.5e-119 434.1 860 35.8
Atru.chr11.1851 Acer truncatum HOM05D004054 ORTHO05D004945 1.7e-118 431.4 877 37.1
CDE09G0195 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 2.8e-118 430.6 821 36.9
Aa31LG8G4770 Aethionema arabicum HOM05D004054 ORTHO05D004945 4.8e-118 429.9 890 35.5
HPP92_011033 Vanilla planifolia HOM05D004054 ORTHO05D004945 4.8e-118 429.9 858 35.2
Lj4g0012636 Lotus japonicus HOM05D004054 ORTHO05D004945 6.3e-118 429.5 886 35.1
Solyc05g007030.4 Solanum lycopersicum HOM05D004054 ORTHO05D004945 6.3e-118 429.5 612 41.5
Glyma.02G021900 Glycine max HOM05D004054 ORTHO05D004945 1.4e-117 428.3 822 35.3
arahy.Tifrunner.gnm1.ann1.K6PP8H Arachis hypogaea HOM05D004054 ORTHO05D004945 5.3e-117 426.4 865 36.2
BcaC01g03722 Brassica carinata HOM05D004054 ORTHO05D004945 9.1e-117 425.6 851 35.7
Sabra10G0030700 Salix brachista HOM05D004054 ORTHO05D004945 2.6e-116 424.1 936 33.8
SalBow2G0733 Salvia bowleyana HOM05D004054 ORTHO05D004945 3.2e-114 417.2 940 34.0
MELO3C012068.2 Cucumis melo HOM05D004054 ORTHO05D004945 2.1e-113 414.5 838 35.4
Lalb_Chr09g0335271 Lupinus albus HOM05D004054 ORTHO05D004945 2.1e-113 414.5 833 35.4
Manes.05G096500 Manihot esculenta HOM05D004054 ORTHO05D004945 2.1e-113 414.5 790 37.0
Psat4g132120 Pisum sativum HOM05D004054 ORTHO05D004945 2.3e-112 411.0 817 34.5
AUR62026254 Chenopodium quinoa HOM05D004054 ORTHO05D004945 3.0e-112 410.6 792 34.5
Ca_04741_v3 Cicer arietinum L. HOM05D004054 ORTHO05D004945 8.2e-110 402.5 851 34.9
SalBow2G2854 Salvia bowleyana HOM05D004054 ORTHO05D004945 1.1e-109 402.1 912 34.4
Hund05913 Selenicereus undatus HOM05D004054 ORTHO05D004945 9.1e-109 399.1 772 35.8
A03p40440 Brassica napus HOM05D004054 ORTHO05D004945 7.7e-108 396.0 776 36.7
Psat2g124400 Pisum sativum HOM05D004054 ORTHO05D004945 2.2e-107 394.4 823 34.3
Zm00001eb409770 Zea mays HOM05D004054 ORTHO05D004945 6.1e-105 386.3 888 33.1
arahy.Tifrunner.gnm1.ann1.S53SYG Arachis hypogaea HOM05D004054 ORTHO05D004945 1.1e-103 382.1 817 32.7
TPR.G13762 Trifolium pratense HOM05D004054 ORTHO05D004945 6.3e-102 376.3 833 33.5
Lsat_1_v5_gn_4_9281 Lactuca sativa HOM05D004054 ORTHO05D004945 1.4e-101 375.2 813 33.0
Medtr5g038440 Medicago truncatula HOM05D004054 ORTHO05D004945 1.6e-100 371.7 814 33.5
Cpa.g.sc5.276 Carica papaya HOM05D004054 ORTHO05D004945 8.5e-99 365.9 575 39.0
Lj2g0020807 Lotus japonicus HOM05D004054 ORTHO05D004945 1.8e-96 358.2 777 35.1
Lalb_Chr17g0340361 Lupinus albus HOM05D004054 ORTHO05D004945 3.0e-96 357.5 761 34.2
arahy.Tifrunner.gnm1.ann1.B2D650 Arachis hypogaea HOM05D004054 ORTHO05D004945 6.8e-96 356.3 812 32.6
EL10Ac6g13147 Beta vulgaris HOM05D004054 ORTHO05D004945 6.8e-96 356.3 815 33.4
unitig_22.g6528 Utricularia gibba HOM05D004054 ORTHO05D004945 1.2e-95 355.5 695 36.0
HanXRQChr03g0092771 Helianthus annuus HOM05D004054 ORTHO05D004945 5.0e-91 340.1 650 35.4
ECA234G1496 Erigeron canadensis HOM05D004054 ORTHO05D004945 3.6e-89 334.0 845 30.1
Gohir.A12G166800 Gossypium hirsutum HOM05D004054 ORTHO05D004945 6.8e-88 329.7 571 36.8
CDE02G2379 Ceratophyllum demersum HOM05D004054 ORTHO05D004945 1.4e-80 305.4 768 31.5
CiPaw.06G080700 Carya illinoinensis HOM05D004054 ORTHO05D004945 4.0e-80 303.9 458 40.4
VMungo1215G1372 Vigna mungo HOM05D004054 ORTHO05D004945 3.5e-76 290.8 918 27.7
Phvul.002G066700 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 6.2e-73 280.0 515 36.1
Ah.03g132020 Amaranthus hybridus HOM05D004054 ORTHO05D004945 4.0e-72 277.3 510 36.7
Zm00001eb066230 Zea mays HOM05D004054 ORTHO05D004945 2.6e-71 274.6 513 36.8
Nn1g02896 Nelumbo nucifera HOM05D004054 ORTHO05D004945 6.6e-67 260.0 854 28.6
unitig_8.g3947 Utricularia gibba HOM05D004054 ORTHO05D004945 6.6e-67 260.0 570 31.8
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 9.3e-37 159.8 460 28.7
Phvul.002G066500 Phaseolus vulgaris HOM05D004054 ORTHO05D004945 1.3e-33 149.4 301 35.9
CiPaw.06G080600 Carya illinoinensis HOM05D004054 ORTHO05D004945 9.0e-32 143.3 312 35.9
CBR_g39858 Chara braunii HOM05D004054 ORTHO05D009492 9.0e-32 143.3 321 34.0
Potri.008G194566 Populus trichocarpa HOM05D004054 ORTHO05D004945 9.9e-31 139.8 244 36.9
Cpa.g.sc5.277 Carica papaya HOM05D004054 ORTHO05D004945 1.9e-26 125.6 281 35.9
CBR_g39856 Chara braunii HOM05D000019 ORTHO05D000353 3.1e-24 118.2 238 33.6
Potri.008G194632 Populus trichocarpa HOM05D004054 ORTHO05D004945 7.9e-20 103.6 185 38.9
MSTRG.2359 Avicennia marina HOM05D004054 ORTHO05D004945 1.3e-19 102.8 188 37.8
CBR_g39853 Chara braunii HOM05D000019 ORTHO05D000002 6.3e-17 94.0 216 32.9
RcHm_v2.0_Chr1g0331861 Rosa chinensis HOM05D004054 ORTHO05D004945 2.6e-15 88.6 141 36.9
Gohir.A12G166900 Gossypium hirsutum HOM05D004054 ORTHO05D004945 7.6e-15 87.0 262 31.7
C02p33030 Brassica napus HOM05D004054 ORTHO05D004945 1.0e-14 86.7 160 35.0
C03p36410 Brassica napus HOM05D004054 ORTHO05D004945 6.7e-11 73.9 129 34.9
BolC3t15954H Brassica oleracea HOM05D004054 ORTHO05D004945 6.7e-11 73.9 129 34.9
A05p04500 Brassica napus HOM05D004054 ORTHO05D004945 9.1e-08 63.5 107 36.4
C03p62480 Brassica napus HOM05D004054 ORTHO05D004945 9.1e-08 63.5 107 36.4
Lsat_1_v5_gn_3_52120 Lactuca sativa HOM05D004054 ORTHO05D004945 1.5e-07 62.8 67 46.3
Lsat_1_v5_gn_7_73540 Lactuca sativa HOM05D004054 ORTHO05D004945 3.4e-07 61.6 59 49.2
Lalb_Chr17g0340371 Lupinus albus HOM05D004054 ORTHO05D004945 7.7e-07 60.5 58 48.3
unitig_8.g3946 Utricularia gibba HOM05D004054 ORTHO05D004945 5.0e-06 57.8 127 29.9


User provided reference genes

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