Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 0.0e+00 1162.5 628 100.0
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 2.0e-113 414.1 633 46.1
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.4e-95 354.8 650 42.9
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 1.1e-87 328.6 613 40.5
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 1.3e-85 321.6 621 40.7
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 3.2e-84 317.0 617 40.4
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.2e-83 315.1 617 39.5
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 1.0e-82 312.0 616 41.7
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 2.6e-81 307.4 606 40.1
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 4.4e-81 306.6 612 38.1
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 9.8e-81 305.4 603 40.3
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 3.7e-80 303.5 625 39.0
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 1.1e-79 302.0 610 39.5
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.4e-79 301.6 611 38.6
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 1.4e-79 301.6 604 39.9
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 1.8e-79 301.2 609 39.1
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 3.1e-79 300.4 612 39.7
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 5.4e-79 299.7 610 39.5
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 9.1e-79 298.9 603 39.3
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.2e-78 298.5 645 37.5
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.6e-78 298.1 610 40.5
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.6e-78 298.1 603 39.6
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 4.5e-78 296.6 622 37.9
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 4.5e-78 296.6 557 40.8
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 1.3e-77 295.0 607 39.4
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 3.8e-77 293.5 611 36.8
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 5.0e-77 293.1 618 38.8
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 5.0e-77 293.1 640 36.9
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 5.0e-77 293.1 640 36.9
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.0e-77 293.1 622 38.3
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 5.0e-77 293.1 629 37.4
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 5.0e-77 293.1 620 37.1
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 8.6e-77 292.4 604 38.6
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 8.6e-77 292.4 304 56.9
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.5e-76 291.6 620 38.4
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.9e-76 291.2 610 40.0
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 1.9e-76 291.2 613 37.4
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.5e-76 289.7 623 38.0
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 5.5e-76 289.7 621 37.0
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 7.2e-76 289.3 607 38.6
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 7.2e-76 289.3 613 38.2
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 7.2e-76 289.3 619 36.7
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 7.2e-76 289.3 617 37.1
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 3.6e-75 287.0 609 37.6
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 4.7e-75 286.6 617 37.1
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 6.1e-75 286.2 617 37.8
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 8.0e-75 285.8 623 36.9
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 3.0e-74 283.9 607 38.1
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 3.0e-74 283.9 520 40.2
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 5.2e-74 283.1 622 38.6
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.2e-73 282.0 611 36.8
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 1.2e-73 282.0 611 36.8
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 1.5e-73 281.6 627 36.8
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 1.5e-73 281.6 614 37.8
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 2.0e-73 281.2 628 36.9
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 2.0e-73 281.2 359 51.0
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 2.6e-73 280.8 616 35.9
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 3.4e-73 280.4 621 36.2
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 5.7e-73 279.6 620 38.7
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 5.7e-73 279.6 614 36.8
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 1.3e-72 278.5 525 41.0
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 2.2e-72 277.7 630 36.8
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 2.8e-72 277.3 611 37.6
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 8.3e-72 275.8 517 39.7
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 1.8e-71 274.6 615 36.9
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 1.8e-71 274.6 615 36.9
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.8e-71 274.6 608 36.8
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 1.8e-71 274.6 620 37.3
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 2.4e-71 274.2 612 38.2
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 2.4e-71 274.2 590 36.6
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 4.1e-71 273.5 619 37.2
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 4.1e-71 273.5 611 37.3
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 5.4e-71 273.1 618 36.7
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 5.4e-71 273.1 633 37.4
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 7.0e-71 272.7 618 36.7
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 7.0e-71 272.7 626 37.2
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 2.0e-70 271.2 441 43.5
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 2.0e-70 271.2 620 35.5
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 2.7e-70 270.8 615 36.4
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.3e-69 268.5 623 36.8
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 3.9e-69 266.9 626 35.3
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 8.6e-69 265.8 598 35.1
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.1e-68 265.4 617 37.3
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 1.1e-68 265.4 617 35.8
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.5e-68 265.0 610 38.0
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 1.9e-68 264.6 615 36.6
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 1.9e-68 264.6 302 51.0
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 5.6e-68 263.1 249 58.6
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 9.5e-68 262.3 611 36.7
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.2e-67 261.9 611 33.9
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.2e-67 261.9 274 55.8
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.1e-67 261.2 315 51.4
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 3.6e-67 260.4 608 37.2
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 4.7e-67 260.0 640 34.7
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.4e-66 258.5 625 35.4
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 5.2e-66 256.5 679 34.5
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 2.6e-65 254.2 608 35.4
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 1.7e-64 251.5 627 35.2
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 7.8e-62 242.7 525 35.6
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 3.5e-54 217.2 488 36.1
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 1.1e-50 205.7 249 50.6
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 5.2e-50 203.4 246 52.8
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 6.4e-48 196.4 619 31.2
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 6.2e-43 179.9 131 66.4
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.6e-41 174.5 251 46.2
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 1.1e-34 152.5 173 53.2
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.1e-34 151.0 181 51.4
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 4.6e-30 137.1 143 52.4
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 1.0e-29 136.0 436 31.2
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.0e-29 136.0 395 32.4
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.0e-29 136.0 395 32.4
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 1.6e-27 128.6 98 69.4
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 4.8e-27 127.1 98 69.4
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 1.4e-26 125.6 403 29.3
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 1.4e-18 99.0 167 41.9
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 4.9e-16 90.5 376 31.6
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 1.4e-15 89.0 364 29.1
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 7.4e-12 76.6 63 66.7
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.1e-11 75.1 354 27.4
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 5.5e-07 60.5 76 47.4
CSS0040420 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 2.1e-06 58.5 156 23.7
MBI18_g09773_MAGBIO Magnolia biondii HOM05D003145 ORTHO05D003586 2.1e-06 58.5 164 23.2
CAN.G485.1 Capsicum annuum HOM05D003145 ORTHO05D003586 2.7e-06 58.2 172 23.8
SEGI_04639 Sequoiadendron giganteum HOM05D003145 ORTHO05D003586 2.7e-06 58.2 182 23.1
Nn6g33534 Nelumbo nucifera HOM05D003145 ORTHO05D003586 4.6e-06 57.4 172 23.3
Nitab4.5_0001358g0070 Nicotiana tabacum HOM05D003145 ORTHO05D003586 6.1e-06 57.0 172 23.3


User provided reference genes

Program Settings