Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0216s0005 Marchantia polymorpha HOM05D005956 ORTHO05D007197 1.2e-243 846.7 647 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2861 Anthoceros agrestis HOM05D005956 ORTHO05D007197 3.9e-48 197.2 544 57.0
PSO170G2336 Papaver somniferum HOM05D005956 ORTHO05D007197 6.6e-40 169.9 544 44.9
Duzib192G0068 Durio zibethinus HOM05D005956 ORTHO05D007197 2.5e-39 167.9 519 39.3
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 3.3e-39 167.5 530 38.1
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 7.3e-39 166.4 526 47.7
CSS0010876 Camellia sinensis var. sinensis HOM05D005956 ORTHO05D007197 9.5e-39 166.0 555 45.8
Sabra07G0001300 Salix brachista HOM05D005956 ORTHO05D007197 1.6e-38 165.2 520 39.2
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 2.1e-38 164.9 532 37.6
Eucgr.J03191 Eucalyptus grandis HOM05D005956 ORTHO05D007197 3.6e-38 164.1 542 37.8
Thecc.06G054100 Theobroma cacao HOM05D005956 ORTHO05D007197 4.7e-38 163.7 535 40.6
MELO3C020528.2 Cucumis melo HOM05D005956 ORTHO05D007197 1.1e-37 162.5 533 36.6
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 1.1e-37 162.5 538 46.5
BraA07t31918Z Brassica rapa HOM05D000309 ORTHO05D007197 1.8e-37 161.8 510 40.0
PSO063G0021 Papaver somniferum HOM05D005956 ORTHO05D007197 1.8e-37 161.8 544 46.5
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 2.3e-37 161.4 530 37.9
CiPaw.01G207000 Carya illinoinensis HOM05D005956 ORTHO05D007197 2.3e-37 161.4 521 39.0
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 4.0e-37 160.6 536 38.2
vmacro18734 Vaccinium macrocarpon HOM05D005956 ORTHO05D007197 6.8e-37 159.8 529 47.1
A07p44100 Brassica napus HOM05D000309 ORTHO05D007197 3.4e-36 157.5 529 50.1
SalBow8G3086 Salvia bowleyana HOM05D005956 ORTHO05D007197 3.4e-36 157.5 543 52.9
Hma1.2p1_1111F.1_g258470 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 9.9e-36 156.0 521 49.3
MD17G1161200 Malus domestica HOM05D005956 ORTHO05D007197 2.2e-35 154.8 535 38.5
TWI12G1352 Tripterygium wilfordii HOM05D005956 ORTHO05D007197 2.9e-35 154.5 531 38.2
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 3.7e-35 154.1 517 47.2
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 6.4e-35 153.3 534 47.4
TAR636G0827 Trochodendron aralioides HOM05D005956 ORTHO05D007197 8.4e-35 152.9 459 50.8
Nitab4.5_0000499g0110 Nicotiana tabacum HOM05D005956 ORTHO05D007197 1.4e-34 152.1 532 38.2
C06p52830 Brassica napus HOM05D000309 ORTHO05D007197 1.9e-34 151.8 529 48.8
Oeu039938.1 Olea europaea HOM05D005956 ORTHO05D007197 1.9e-34 151.8 546 48.7
RcHm_v2.0_Chr2g0149071 Rosa chinensis HOM05D005956 ORTHO05D007197 2.4e-34 151.4 531 38.4
Sp5g33970 Schrenkiella parvula HOM05D005956 ORTHO05D007197 2.4e-34 151.4 509 48.1
Atru.chr1.2600 Acer truncatum HOM05D005956 ORTHO05D007197 5.4e-34 150.2 517 37.7
HanXRQChr15g0497231 Helianthus annuus HOM05D005956 ORTHO05D007197 7.1e-34 149.8 514 47.1
Potri.007G001800 Populus trichocarpa HOM05D005956 ORTHO05D007197 9.2e-34 149.4 519 38.3
Actinidia21896 Actinidia chinensis HOM05D005956 ORTHO05D007197 2.7e-33 147.9 451 40.4
BcaC08g47440 Brassica carinata HOM05D005956 ORTHO05D007197 2.7e-33 147.9 529 51.4
BolC6t40300H Brassica oleracea HOM05D000163 ORTHO05D000219 2.7e-33 147.9 529 51.0
ClCG03G000530 Citrullus lanatus HOM05D005956 ORTHO05D007197 2.7e-33 147.9 520 36.7
Lsat_1_v5_gn_4_106240 Lactuca sativa HOM05D005956 ORTHO05D007197 7.8e-33 146.4 534 46.3
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 7.8e-33 146.4 517 37.1
Aa31LG4G2050 Aethionema arabicum HOM05D005956 ORTHO05D007197 1.0e-32 146.0 505 43.2
Cfa003426 Carpinus fangiana HOM05D005956 ORTHO05D007197 1.7e-32 145.2 534 38.2
THA.LOC104812335 Tarenaya hassleriana HOM05D005956 ORTHO05D007197 2.3e-32 144.8 551 49.4
BcaB03g16055 Brassica carinata HOM05D005956 ORTHO05D007197 5.1e-32 143.7 560 47.3
CAN.G790.4 Capsicum annuum HOM05D005956 ORTHO05D007197 1.1e-31 142.5 554 36.5
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 1.1e-31 142.5 526 36.7
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 1.5e-31 142.1 533 37.7
Migut.D02038 Erythranthe guttata HOM05D005956 ORTHO05D007197 4.3e-31 140.6 557 43.8
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 4.3e-31 140.6 571 40.6
Solyc03g124040.3 Solanum lycopersicum HOM05D005956 ORTHO05D007197 7.3e-31 139.8 535 37.0
AUR62000122 Chenopodium quinoa HOM05D005956 ORTHO05D007197 9.6e-31 139.4 537 37.1
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.6e-30 138.7 533 37.3
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 3.6e-30 137.5 538 34.4
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.1e-29 136.0 533 37.3
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 1.8e-29 135.2 529 43.7
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 2.4e-29 134.8 526 38.0
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 3.1e-29 134.4 533 37.1
MBI16_g10330_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 5.2e-29 133.7 538 48.3
SGA_v2.0_scaffold115G32115 Striga asiatica HOM05D005956 ORTHO05D007197 1.5e-28 132.1 585 42.4
Lj7A719T46 Lonicera japonica HOM05D005956 ORTHO05D007197 2.0e-28 131.7 533 48.6
Gorai.010G135000 Gossypium raimondii HOM05D005956 ORTHO05D007197 2.6e-28 131.3 530 37.2
EL10Ac7g17213 Beta vulgaris HOM05D005956 ORTHO05D007197 3.4e-28 131.0 540 41.5
CANSAT01G3224 Cannabis sativa HOM05D005956 ORTHO05D007197 9.9e-28 129.4 535 35.1
SGA_v2.0_scaffold69G23343 Striga asiatica HOM05D005956 ORTHO05D007197 1.7e-27 128.6 532 37.4
unitig_578.g15928 Utricularia gibba HOM05D005956 ORTHO05D007197 1.7e-27 128.6 530 35.7
QL07p046118 Quercus lobata HOM05D005956 ORTHO05D007197 3.8e-27 127.5 528 36.9
HPP92_000245 Vanilla planifolia HOM05D005956 ORTHO05D007197 1.9e-26 125.2 538 23.0
Glyma.15G000800 Glycine max HOM05D005956 ORTHO05D007197 2.4e-26 124.8 531 36.5
ATR0626G219 Amborella trichopoda HOM05D005956 ORTHO05D007197 3.2e-26 124.4 528 43.0
Ciclev10013933m.g Citrus clementina HOM05D005956 ORTHO05D007197 7.1e-26 123.2 515 36.5
Cpa.g.sc176.24 Carica papaya HOM05D005956 ORTHO05D007197 9.3e-26 122.9 502 38.0
CsaV3_1G036410 Cucumis sativus L. HOM05D005956 ORTHO05D007197 1.2e-25 122.5 518 35.3
Medtr6g003960 Medicago truncatula HOM05D005956 ORTHO05D007197 1.2e-25 122.5 542 34.3
AUR62019303 Chenopodium quinoa HOM05D005956 ORTHO05D007197 2.1e-25 121.7 571 35.2
Zm00001eb000010 Zea mays HOM05D005956 ORTHO05D007197 2.1e-25 121.7 532 44.0
COL.COLO4_25126 Corchorus olitorius HOM05D005956 ORTHO05D007197 2.7e-25 121.3 527 37.4
AT1G78930 Arabidopsis thaliana HOM05D005956 ORTHO05D007197 3.5e-25 120.9 597 44.1
Carub.0002s2578 Capsella rubella HOM05D005956 ORTHO05D007197 7.8e-25 119.8 506 34.6
Hund05666 Selenicereus undatus HOM05D005956 ORTHO05D007197 1.0e-24 119.4 242 34.3
Sopen03g041770 Solanum pennellii HOM05D005956 ORTHO05D007197 2.3e-24 118.2 535 36.1
Aqoxy7G02692 Aquilegia oxysepala HOM05D005956 ORTHO05D007197 3.9e-24 117.5 527 47.8
Ca_00996_v3 Cicer arietinum L. HOM05D005956 ORTHO05D007197 5.1e-24 117.1 544 39.7
Psat5g306040 Pisum sativum HOM05D005956 ORTHO05D007197 1.1e-23 115.9 525 36.2
Dinv08767 Davidia involucrata HOM05D005956 ORTHO05D007197 5.6e-23 113.6 386 58.0
Gohir.A06G112700 Gossypium hirsutum HOM05D005956 ORTHO05D007197 9.6e-23 112.8 185 71.4
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 1.3e-22 112.5 528 35.2
Nn2g12784 Nelumbo nucifera HOM05D005956 ORTHO05D007197 4.8e-22 110.5 532 34.2
Sc05g0006980 Simmondsia chinensis HOM05D005956 ORTHO05D007197 8.1e-22 109.8 224 36.2
CARHR072540 Cardamine hirsuta HOM05D005956 ORTHO05D007197 2.4e-21 108.2 210 34.3
CDE02G2643 Ceratophyllum demersum HOM05D005956 ORTHO05D007197 2.4e-21 108.2 225 32.9
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 4.0e-21 107.5 535 33.6
AL2G39370 Arabidopsis lyrata HOM05D005956 ORTHO05D007197 5.3e-21 107.1 538 46.8
Thhalv10018313m.g Eutrema salsugineum HOM05D005956 ORTHO05D007197 1.2e-20 105.9 210 34.3
Peaxi162Scf00038g02615 Petunia axillaris HOM05D005956 ORTHO05D007197 1.2e-20 105.9 553 34.5
Gohir.D06G117400 Gossypium hirsutum HOM05D005956 ORTHO05D007197 2.6e-20 104.8 227 34.4
SEGI_03409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 2.6e-20 104.8 224 33.5
SEGI_15409 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 2.6e-20 104.8 224 33.5
Zm00001eb320340 Zea mays HOM05D005956 ORTHO05D007197 5.8e-20 103.6 521 51.2
Prupe.3G025200 Prunus persica HOM05D005956 ORTHO05D007197 2.2e-19 101.7 232 34.9
PGSC0003DMG400009194 Solanum tuberosum HOM05D005956 ORTHO05D007197 4.9e-19 100.5 542 34.7
HPP92_000192 Vanilla planifolia HOM05D005956 ORTHO05D007197 3.2e-18 97.8 177 31.1
Os09g0560100 Oryza sativa ssp. japonica HOM05D005956 ORTHO05D007197 7.1e-18 96.7 247 31.6
Haze_16217 Corylus avellana HOM05D005956 ORTHO05D007197 1.0e-16 92.8 186 64.5
CBR_g20999 Chara braunii HOM05D005956 ORTHO05D001299 1.7e-16 92.0 204 30.9
ECA233G3598 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-15 89.4 254 31.1
Nitab4.5_0005679g0020 Nicotiana tabacum HOM05D005956 ORTHO05D007197 1.5e-15 89.0 71 56.3
Atru.chr1.2601 Acer truncatum HOM05D005956 ORTHO05D007197 2.5e-15 88.2 140 32.9
Hma1.2p1_1111F.1_g258480 Hydrangea macrophylla HOM05D005956 ORTHO05D007197 3.3e-15 87.8 156 35.9
MBI16_g00686_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 4.3e-15 87.4 167 69.5
MBI16_g37212_MAGBIO Magnolia biondii HOM05D005956 ORTHO05D007197 7.3e-15 86.7 139 34.5
Phvul.005G185600 Phaseolus vulgaris HOM05D005956 ORTHO05D007197 4.8e-14 84.0 229 29.3
DCAR_030820 Daucus carota HOM05D005956 ORTHO05D007197 6.2e-14 83.6 258 29.5
Sc05g0006990 Simmondsia chinensis HOM05D005956 ORTHO05D007197 1.1e-13 82.8 68 51.5
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 6.9e-13 80.1 72 52.8
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 3.4e-12 77.8 303 27.4
FvH4_4g20560 Fragaria vesca HOM05D005956 ORTHO05D007197 9.9e-12 76.3 321 24.9
SEGI_36231 Sequoiadendron giganteum HOM05D005956 ORTHO05D007197 2.2e-11 75.1 174 37.4
Actinidia24382 Actinidia chinensis HOM05D005956 ORTHO05D007197 2.1e-09 68.6 158 70.3
SGA_v2.0_scaffold69G23347 Striga asiatica HOM05D005956 ORTHO05D007197 1.9e-07 62.0 142 74.6
AUR62011322 Chenopodium quinoa HOM05D005605 ORTHO05D007615 2.5e-07 61.6 55 47.3
Haze_02388 Corylus avellana HOM05D005605 ORTHO05D007615 2.5e-07 61.6 55 45.5
HanXRQChr04g0125301 Helianthus annuus HOM05D005956 ORTHO05D007197 2.5e-07 61.6 49 51.0
AUR62016738 Chenopodium quinoa HOM05D005605 ORTHO05D007615 3.3e-07 61.2 55 45.5
Ah.01g006280 Amaranthus hybridus HOM05D005605 ORTHO05D007615 4.3e-07 60.8 55 45.5
Lalb_Chr03g0025671 Lupinus albus HOM05D005605 ORTHO05D007615 4.3e-07 60.8 55 47.3
arahy.Tifrunner.gnm1.ann1.IZ1QNN Arachis hypogaea HOM05D005605 ORTHO05D007615 7.4e-07 60.1 55 47.3
arahy.Tifrunner.gnm1.ann1.XL89DC Arachis hypogaea HOM05D005605 ORTHO05D007615 7.4e-07 60.1 55 47.3
ClCG02G005000 Citrullus lanatus HOM05D005605 ORTHO05D007615 7.4e-07 60.1 55 47.3
MELO3C012521.2 Cucumis melo HOM05D005605 ORTHO05D007615 7.4e-07 60.1 55 47.3
CsaV3_7G023590 Cucumis sativus L. HOM05D005605 ORTHO05D007615 7.4e-07 60.1 55 47.3
Duzib052G1004 Durio zibethinus HOM05D005605 ORTHO05D007615 7.4e-07 60.1 55 43.6
Lsat_1_v5_gn_1_111380 Lactuca sativa HOM05D005605 ORTHO05D007615 7.4e-07 60.1 55 43.6
CiPaw.05G064700 Carya illinoinensis HOM05D005605 ORTHO05D007615 9.6e-07 59.7 55 43.6
Glyma.12G043100 Glycine max HOM05D005605 ORTHO05D007615 9.6e-07 59.7 55 45.5
Ca_20877_v3 Cicer arietinum L. HOM05D005605 ORTHO05D007615 1.3e-06 59.3 55 47.3
QL11p043893 Quercus lobata HOM05D005605 ORTHO05D007615 1.3e-06 59.3 55 43.6
TWI31G1015 Tripterygium wilfordii HOM05D005605 ORTHO05D007615 1.3e-06 59.3 55 43.6
MD09G1167300 Malus domestica HOM05D005956 ORTHO05D007197 1.6e-06 58.9 125 34.4
Sabra09G0089200 Salix brachista HOM05D005605 ORTHO05D007615 1.6e-06 58.9 55 43.6
SGA_v2.0_scaffold58G20533 Striga asiatica HOM05D005605 ORTHO05D007615 1.6e-06 58.9 55 41.8
VMungo1127G2130 Vigna mungo HOM05D005605 ORTHO05D007615 1.6e-06 58.9 55 45.5
Zm00001eb299540 Zea mays HOM05D005605 ORTHO05D007615 1.6e-06 58.9 56 44.6
Atru.chr5.3019 Acer truncatum HOM05D005605 ORTHO05D007615 2.1e-06 58.5 55 43.6
Gorai.013G037000 Gossypium raimondii HOM05D005605 ORTHO05D007615 2.1e-06 58.5 55 41.8
HanXRQChr11g0343841 Helianthus annuus HOM05D005605 ORTHO05D007615 2.1e-06 58.5 55 41.8
Manes.17G101300 Manihot esculenta HOM05D005605 ORTHO05D007615 2.1e-06 58.5 55 43.6
Medtr4g070060 Medicago truncatula HOM05D005605 ORTHO05D007615 2.1e-06 58.5 55 47.3
PSO541G1874 Papaver somniferum HOM05D005605 ORTHO05D007615 2.1e-06 58.5 55 43.6
Sc18g0004450 Simmondsia chinensis HOM05D005605 ORTHO05D007615 2.1e-06 58.5 55 41.8
GSVIVG01031970001 Vitis vinifera HOM05D005605 ORTHO05D007615 2.1e-06 58.5 56 42.9
MSTRG.20083 Avicennia marina HOM05D005605 ORTHO05D007615 2.8e-06 58.2 55 41.8
CANSAT01G2366 Cannabis sativa HOM05D005605 ORTHO05D007615 2.8e-06 58.2 55 43.6
Pp3c5_9520 Physcomitrium patens HOM05D005605 ORTHO05D001299 2.8e-06 58.2 61 41.0
Potri.009G116200 Populus trichocarpa HOM05D005605 ORTHO05D007615 2.8e-06 58.2 55 43.6
TPR.G34335 Trifolium pratense HOM05D002901 ORTHO05D003183 2.8e-06 58.2 61 42.6
Cfa005000 Carpinus fangiana HOM05D005605 ORTHO05D007615 3.7e-06 57.8 55 41.8
Ciclev10028120m.g Citrus clementina HOM05D005605 ORTHO05D007615 3.7e-06 57.8 55 40.0
Dinv23519 Davidia involucrata HOM05D005605 ORTHO05D007615 3.7e-06 57.8 55 41.8
FAN15G0883 Fragaria x ananassa HOM05D005605 ORTHO05D007615 3.7e-06 57.8 55 45.5
FAN20G2643 Fragaria x ananassa HOM05D005605 ORTHO05D007615 3.7e-06 57.8 55 45.5
Hma1.2p1_0066F.1_g036390 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 3.7e-06 57.8 55 43.6
Hma1.2p1_0066F.1_g036400 Hydrangea macrophylla HOM05D005605 ORTHO05D007615 3.7e-06 57.8 55 43.6
Sed0006971 Sechium edule HOM05D005605 ORTHO05D007615 3.7e-06 57.8 55 47.3
EL10Ac9g21723 Beta vulgaris HOM05D005605 ORTHO05D007615 4.8e-06 57.4 55 43.6
Lj5C196G6 Lonicera japonica HOM05D005605 ORTHO05D007615 4.8e-06 57.4 55 41.8
Psat7g141400 Pisum sativum HOM05D005605 ORTHO05D007615 4.8e-06 57.4 55 45.5
Prupe.8G096600 Prunus persica HOM05D005605 ORTHO05D007615 4.8e-06 57.4 55 45.5
PGR142G2567 Punica granatum HOM05D005605 ORTHO05D007615 4.8e-06 57.4 55 41.8
TAR628G1411 Trochodendron aralioides HOM05D005605 ORTHO05D007615 4.8e-06 57.4 55 45.5
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 6.2e-06 57.0 59 45.8
CAN.G1412.8 Capsicum annuum HOM05D005605 ORTHO05D007615 6.2e-06 57.0 55 38.2
MBI02_g03744_MAGBIO Magnolia biondii HOM05D005605 ORTHO05D007615 6.2e-06 57.0 55 43.6
Nitab4.5_0000308g0140 Nicotiana tabacum HOM05D005605 ORTHO05D007615 6.2e-06 57.0 55 40.0
PSO675G3023 Papaver somniferum HOM05D005605 ORTHO05D007615 6.2e-06 57.0 55 41.8
RcHm_v2.0_Chr6g0264281 Rosa chinensis HOM05D005605 ORTHO05D007615 6.2e-06 57.0 55 43.6
TPR.G19396 Trifolium pratense HOM05D005605 ORTHO05D007615 6.2e-06 57.0 55 45.5
Cc02_g17560 Coffea canephora HOM05D005605 ORTHO05D007615 8.1e-06 56.6 55 38.2
Haze_04770 Corylus avellana HOM05D002901 ORTHO05D003183 8.1e-06 56.6 66 37.9
Nitab4.5_0004172g0020 Nicotiana tabacum HOM05D005605 ORTHO05D007615 8.1e-06 56.6 55 40.0
GSVIVG01011061001 Vitis vinifera HOM05D002901 ORTHO05D003183 8.1e-06 56.6 72 33.3


User provided reference genes

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