Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 5.2e-276 953.7 476 100.0
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 5.5e-100 369.0 452 49.1
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.0e-98 364.8 443 46.3
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.1e-97 361.3 440 46.8
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 4.3e-97 359.4 437 44.9
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 5.6e-97 359.0 445 46.3
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 1.3e-96 357.8 440 47.0
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.3e-96 357.8 440 46.4
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.6e-96 357.5 435 46.2
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.6e-96 357.5 437 46.7
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 8.2e-96 355.1 440 45.9
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.1e-95 354.8 437 45.5
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.2e-94 351.3 440 44.8
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.5e-94 350.9 440 45.2
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.5e-94 350.9 438 45.4
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.0e-94 350.5 438 45.2
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 3.4e-94 349.7 437 45.1
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 4.5e-94 349.4 410 49.5
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 4.5e-94 349.4 440 45.7
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 5.8e-94 349.0 433 45.7
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 7.6e-94 348.6 433 45.0
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.0e-93 348.2 439 44.9
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.3e-93 347.8 437 45.1
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.3e-93 347.8 437 45.3
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.9e-93 346.7 440 45.0
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.9e-93 345.9 437 45.3
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.5e-93 345.5 438 44.3
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 8.4e-93 345.1 441 44.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 8.4e-93 345.1 438 45.2
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.1e-92 344.7 440 45.5
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 1.9e-92 344.0 440 44.3
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.5e-92 343.6 440 44.8
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.5e-92 343.6 435 45.3
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 2.5e-92 343.6 438 45.9
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 2.5e-92 343.6 437 45.1
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 3.2e-92 343.2 438 44.5
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 5.5e-92 342.4 439 44.6
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 5.5e-92 342.4 432 45.4
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 5.5e-92 342.4 435 45.3
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 7.1e-92 342.0 438 44.3
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 7.1e-92 342.0 441 44.9
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 9.3e-92 341.7 438 44.5
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.3e-92 341.7 437 43.5
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.2e-91 341.3 433 44.8
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 1.6e-91 340.9 439 44.4
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 2.1e-91 340.5 440 44.5
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 2.1e-91 340.5 438 44.5
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 4.6e-91 339.3 445 42.7
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.0e-91 339.0 438 43.4
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 7.9e-91 338.6 435 44.8
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 7.9e-91 338.6 435 44.8
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 7.9e-91 338.6 436 44.3
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.0e-90 338.2 440 44.3
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.0e-90 338.2 441 45.6
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 1.3e-90 337.8 438 44.5
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 3.0e-90 336.7 449 43.4
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 3.9e-90 336.3 437 44.4
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 3.9e-90 336.3 439 45.3
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 3.9e-90 336.3 438 43.4
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 6.7e-90 335.5 444 43.5
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 6.7e-90 335.5 437 43.5
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 6.7e-90 335.5 435 43.7
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 6.7e-90 335.5 436 44.5
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.1e-89 334.7 438 44.1
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 1.5e-89 334.3 436 43.1
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-89 334.3 437 44.6
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 1.9e-89 334.0 436 43.1
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 1.9e-89 334.0 436 42.9
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 2.5e-89 333.6 434 43.5
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 3.3e-89 333.2 439 42.6
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 4.3e-89 332.8 439 43.7
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 1.3e-88 331.3 436 42.7
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 1.6e-88 330.9 435 43.4
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.6e-88 330.9 440 43.9
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.6e-88 330.9 440 43.6
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 2.8e-88 330.1 437 43.0
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 4.8e-88 329.3 438 44.1
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 4.8e-88 329.3 456 41.9
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 6.3e-88 328.9 439 43.3
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 8.2e-88 328.6 436 43.3
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 8.2e-88 328.6 436 43.3
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 2.4e-87 327.0 436 42.9
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 4.1e-87 326.2 438 42.2
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 5.3e-87 325.9 435 42.5
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 9.0e-87 325.1 440 43.6
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 2.6e-86 323.6 401 46.4
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 4.5e-86 322.8 436 42.0
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 7.6e-86 322.0 433 42.5
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 1.0e-85 321.6 433 42.5
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.0e-85 321.6 437 43.0
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 1.7e-85 320.9 435 42.8
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 2.2e-85 320.5 439 44.0
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 2.2e-85 320.5 401 45.6
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 3.8e-85 319.7 437 41.6
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.5e-85 318.9 438 42.2
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 8.5e-85 318.5 436 41.3
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 1.4e-84 317.8 432 41.9
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 1.4e-84 317.8 429 42.4
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 2.5e-84 317.0 436 41.3
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 2.5e-84 317.0 436 41.3
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 2.5e-84 317.0 437 42.6
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 5.5e-84 315.8 441 41.5
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 7.2e-84 315.5 440 42.5
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 9.3e-84 315.1 438 42.7
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.6e-83 314.3 440 42.5
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 2.1e-83 313.9 464 41.6
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.1e-83 313.9 401 44.6
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 6.1e-83 312.4 438 43.2
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 2.3e-82 310.5 400 44.8
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 6.7e-82 308.9 438 42.0
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 1.9e-81 307.4 439 41.2
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.2e-80 303.9 470 40.0
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 6.3e-80 302.4 470 39.4
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.1e-79 299.7 470 39.6
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 4.1e-79 299.7 385 43.9
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 2.0e-78 297.4 452 39.4
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.4e-78 296.6 413 43.6
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 4.5e-78 296.2 470 39.6
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 3.8e-77 293.1 436 39.9
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 1.2e-75 288.1 444 39.0
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 3.0e-74 283.5 448 37.9
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.2e-70 271.6 439 39.2
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.6e-70 270.4 473 38.1
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 3.8e-69 266.5 449 37.9
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.2e-67 261.5 342 42.1
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.0e-65 254.2 433 39.0
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.6e-62 244.6 274 47.4
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.2e-61 240.7 438 34.7
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 8.0e-59 232.3 433 37.2
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 4.5e-54 216.5 271 43.5
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.5e-49 201.4 236 47.5
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.4e-47 194.1 297 38.7
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 7.0e-47 192.6 304 40.1
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.5e-38 163.7 443 28.0
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 9.8e-33 145.6 244 39.8
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.0e-29 135.6 218 39.0
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 6.2e-27 126.3 226 36.7
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 4.4e-25 120.2 197 38.6
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.4e-24 116.3 174 36.8
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 2.6e-17 94.4 189 34.9
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 2.9e-16 90.9 85 54.1
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 1.4e-15 88.6 82 52.4
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 1.9e-15 88.2 175 34.9
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.1e-14 84.7 77 49.4
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 7.3e-12 76.3 69 49.3
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 3.8e-08 63.9 148 30.4
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 2.4e-07 61.2 46 58.7
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 1.6e-06 58.5 42 69.0
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 7.8e-06 56.2 154 27.3


User provided reference genes

Program Settings