Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 1.9e-223 778.9 387 100.0
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 1.3e-99 367.5 370 49.5
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.0e-96 357.8 383 47.5
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.6e-89 334.0 373 46.6
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 3.0e-88 329.7 375 44.5
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 3.3e-87 326.2 364 45.3
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 1.3e-86 324.3 388 45.9
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 3.6e-86 322.8 364 45.1
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 1.4e-85 320.9 371 43.9
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 5.3e-85 318.9 368 44.8
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 5.3e-85 318.9 377 45.1
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 7.6e-84 315.1 373 44.0
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 9.9e-84 314.7 370 44.3
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 9.9e-84 314.7 370 43.8
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 2.9e-83 313.2 370 43.8
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 3.8e-83 312.8 374 42.8
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 4.9e-83 312.4 375 44.8
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 8.4e-83 311.6 361 44.3
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 1.4e-82 310.8 370 44.1
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 2.4e-82 310.1 367 45.0
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 3.2e-82 309.7 375 44.8
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 3.2e-82 309.7 371 43.9
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 3.2e-82 309.7 370 43.5
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 5.4e-82 308.9 375 43.2
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 9.3e-82 308.1 367 43.9
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 1.2e-81 307.8 371 43.4
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 2.1e-81 307.0 367 43.9
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 2.1e-81 307.0 371 43.4
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 2.7e-81 306.6 378 42.3
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 3.5e-81 306.2 367 43.6
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 4.6e-81 305.8 366 43.2
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 6.0e-81 305.4 368 42.9
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 6.0e-81 305.4 371 41.8
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 7.9e-81 305.1 364 42.3
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 7.9e-81 305.1 367 41.1
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 7.9e-81 305.1 364 42.3
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 7.9e-81 305.1 368 43.2
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.3e-80 304.3 364 42.3
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 2.3e-80 303.5 368 44.6
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 2.3e-80 303.5 366 43.7
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 3.0e-80 303.1 364 44.2
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 3.9e-80 302.8 364 43.1
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 3.9e-80 302.8 364 43.1
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 5.1e-80 302.4 364 43.1
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 5.1e-80 302.4 375 42.7
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 5.1e-80 302.4 364 42.0
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 6.7e-80 302.0 364 43.1
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 6.7e-80 302.0 364 43.4
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 6.7e-80 302.0 364 43.1
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 8.7e-80 301.6 370 42.7
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 1.1e-79 301.2 375 41.9
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 1.1e-79 301.2 369 43.4
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 3.3e-79 299.7 375 41.9
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 4.3e-79 299.3 375 41.9
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 4.3e-79 299.3 375 43.2
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 4.3e-79 299.3 368 43.8
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 5.6e-79 298.9 372 42.2
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 7.4e-79 298.5 364 43.7
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 9.6e-79 298.1 375 41.6
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 9.6e-79 298.1 364 43.7
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 9.6e-79 298.1 361 42.4
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 1.6e-78 297.4 368 42.4
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 1.6e-78 297.4 367 42.5
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 3.7e-78 296.2 365 42.7
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 4.8e-78 295.8 367 42.0
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 4.8e-78 295.8 364 43.1
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 6.2e-78 295.4 371 41.5
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 6.2e-78 295.4 364 43.4
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 8.1e-78 295.0 363 42.1
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 8.1e-78 295.0 357 42.0
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.1e-77 294.7 396 41.9
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 1.1e-77 294.7 363 42.4
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 4.0e-77 292.7 364 42.9
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 9.0e-77 291.6 371 41.8
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 9.0e-77 291.6 363 42.4
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 9.0e-77 291.6 366 44.0
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 1.2e-76 291.2 364 42.6
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 1.2e-76 291.2 383 41.3
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 1.5e-76 290.8 368 40.8
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 1.5e-76 290.8 372 42.7
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 2.6e-76 290.0 367 41.4
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 3.4e-76 289.7 363 42.1
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 1.7e-75 287.3 367 41.7
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 1.9e-74 283.9 363 42.1
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.9e-74 283.9 374 42.0
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 2.5e-74 283.5 361 42.7
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 4.2e-74 282.7 360 42.8
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 4.2e-74 282.7 360 41.1
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 9.3e-74 281.6 368 43.5
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 3.0e-72 276.6 367 39.5
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 1.3e-70 271.2 367 39.8
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 4.8e-70 269.2 424 35.6
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 6.2e-70 268.9 414 38.6
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 2.3e-64 250.4 311 43.1
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 1.1e-63 248.1 364 37.1
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 1.3e-62 244.6 367 37.9
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 9.1e-53 211.8 280 42.1
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 2.6e-52 210.3 260 41.9
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 1.9e-50 204.1 262 41.2
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 7.0e-45 185.7 404 34.2
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 4.7e-41 172.9 180 46.7
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 1.8e-40 171.0 259 37.5
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.1e-29 135.2 127 52.0
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 4.2e-26 123.2 361 27.7
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 1.2e-23 115.2 171 39.2
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 9.8e-23 112.1 112 46.4
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 3.7e-22 110.2 152 40.1
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.1e-21 108.6 172 38.4
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.1e-21 108.6 172 38.4
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 7.0e-21 105.9 112 48.2
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 7.0e-21 105.9 139 43.2
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 7.7e-20 102.4 113 45.1
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 7.5e-15 85.9 78 48.7
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 4.5e-12 76.6 132 36.4
Pp3c18_6530 Physcomitrium patens HOM05D005972 ORTHO05D007548 8.6e-11 72.4 92 43.5
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 3.3e-10 70.5 101 42.6
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 7.3e-10 69.3 85 44.7
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 5.2e-08 63.2 101 39.6
TWI79G0402 Tripterygium wilfordii HOM05D001367 ORTHO05D002514 5.2e-08 63.2 151 29.1
CARHR132440 Cardamine hirsuta HOM05D000177 ORTHO05D002752 6.8e-08 62.8 130 35.4
unitig_747.g21455 Utricularia gibba HOM05D000883 ORTHO05D002942 6.8e-08 62.8 124 33.1
Nitab4.5_0023368g0010 Nicotiana tabacum HOM05D000406 ORTHO05D007930 1.2e-07 62.0 140 32.9
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 1.5e-07 61.6 107 35.5
ECA233G1684 Erigeron canadensis HOM05D000406 ORTHO05D007930 2.0e-07 61.2 120 33.3
Potri.010G121500 Populus trichocarpa HOM05D001367 ORTHO05D002514 3.4e-07 60.5 137 27.7
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 4.4e-07 60.1 127 33.1
AL4G34830 Arabidopsis lyrata HOM05D000177 ORTHO05D002752 5.8e-07 59.7 130 33.8
AT2G37890 Arabidopsis thaliana HOM05D000177 ORTHO05D002752 5.8e-07 59.7 133 37.6
Oeu001392.2 Olea europaea HOM05D000177 ORTHO05D002752 9.8e-07 58.9 251 25.9
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 9.8e-07 58.9 63 46.0
Ca_20745_v3 Cicer arietinum L. HOM05D000177 ORTHO05D002752 1.7e-06 58.2 114 30.7
Atru.chr8.2081 Acer truncatum HOM05D000177 ORTHO05D002752 2.2e-06 57.8 149 30.2
Zm00001eb285930 Zea mays HOM05D001367 ORTHO05D002514 2.2e-06 57.8 145 27.6
CAN.G697.15 Capsicum annuum HOM05D000177 ORTHO05D002752 2.9e-06 57.4 136 31.6
PSO210G7036 Papaver somniferum HOM05D000177 ORTHO05D002683 2.9e-06 57.4 207 26.1
EL10Ac6g13247 Beta vulgaris HOM05D000406 ORTHO05D007930 3.7e-06 57.0 120 32.5
CiPaw.09G200400 Carya illinoinensis HOM05D000177 ORTHO05D002752 3.7e-06 57.0 126 31.7
Peaxi162Scf00222g00714 Petunia axillaris HOM05D000406 ORTHO05D007930 3.7e-06 57.0 137 32.1
Cfa017308 Carpinus fangiana HOM05D000177 ORTHO05D002752 4.9e-06 56.6 142 28.9
PGR031G0579 Punica granatum HOM05D000177 ORTHO05D002752 4.9e-06 56.6 127 33.1
SMO364G0058 Selaginella moellendorffii HOM05D000177 ORTHO05D002987 4.9e-06 56.6 130 30.8
TPR.G13454 Trifolium pratense HOM05D000177 ORTHO05D002752 4.9e-06 56.6 114 31.6
arahy.Tifrunner.gnm1.ann1.48D77H Arachis hypogaea HOM05D000177 ORTHO05D004727 6.4e-06 56.2 128 31.2
arahy.Tifrunner.gnm1.ann1.B2GYKK Arachis hypogaea HOM05D000177 ORTHO05D004727 6.4e-06 56.2 128 31.2
Migut.L01970 Erythranthe guttata HOM05D000177 ORTHO05D002752 6.4e-06 56.2 126 32.5
Aa31LG8G8100 Aethionema arabicum HOM05D000177 ORTHO05D004727 8.3e-06 55.8 156 28.8
Sopen05g003590 Solanum pennellii HOM05D000406 ORTHO05D007930 8.3e-06 55.8 138 29.0
PGSC0003DMG400018411 Solanum tuberosum HOM05D000406 ORTHO05D007930 8.3e-06 55.8 145 27.6


User provided reference genes

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