Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.4e-116 422.9 207 100.0
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 5.8e-30 135.2 109 59.6
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 6.4e-29 131.7 168 49.4
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 4.1e-28 129.0 110 57.3
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 4.1e-28 129.0 175 46.3
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 4.1e-28 129.0 172 42.4
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 5.4e-28 128.6 109 57.8
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 1.2e-27 127.5 130 52.3
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 6.0e-27 125.2 113 56.6
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 6.0e-27 125.2 177 44.6
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 7.8e-27 124.8 167 47.9
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 7.8e-27 124.8 110 56.4
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 2.3e-26 123.2 177 44.1
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 2.3e-26 123.2 177 44.1
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 5.1e-26 122.1 189 42.9
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 5.1e-26 122.1 118 53.4
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 5.1e-26 122.1 148 47.3
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 5.1e-26 122.1 170 47.1
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.9e-25 120.2 116 52.6
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.9e-25 120.2 188 44.7
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.5e-25 119.8 116 51.7
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 2.5e-25 119.8 115 53.9
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 9.5e-25 117.9 99 55.6
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 9.5e-25 117.9 175 43.4
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 1.2e-24 117.5 153 43.1
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 1.2e-24 117.5 96 57.3
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 2.8e-24 116.3 122 49.2
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 2.8e-24 116.3 198 39.9
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 3.6e-24 115.9 168 43.5
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 3.6e-24 115.9 90 57.8
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 3.6e-24 115.9 180 42.2
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 4.7e-24 115.5 117 50.4
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 6.2e-24 115.2 96 55.2
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 6.2e-24 115.2 198 41.4
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 6.2e-24 115.2 198 38.4
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 6.2e-24 115.2 115 51.3
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 8.1e-24 114.8 112 51.8
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 1.1e-23 114.4 188 40.4
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 1.1e-23 114.4 159 41.5
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 1.1e-23 114.4 164 43.9
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 1.8e-23 113.6 90 56.7
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.8e-23 113.6 196 40.3
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 1.8e-23 113.6 113 51.3
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 1.8e-23 113.6 113 51.3
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 2.3e-23 113.2 84 61.9
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 3.1e-23 112.8 186 39.8
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 3.1e-23 112.8 192 39.1
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 4.0e-23 112.5 191 39.8
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 4.0e-23 112.5 191 39.8
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 5.2e-23 112.1 191 39.3
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 5.2e-23 112.1 186 39.8
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 5.2e-23 112.1 89 56.2
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 5.2e-23 112.1 89 56.2
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 8.9e-23 111.3 166 43.4
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 2.6e-22 109.8 89 53.9
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 3.4e-22 109.4 168 41.7
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 3.7e-21 105.9 116 46.6
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 4.9e-21 105.5 124 45.2
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 1.1e-20 104.4 198 36.9
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 1.4e-20 104.0 156 40.4
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.9e-20 103.6 156 41.0
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 3.2e-20 102.8 121 42.1
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 5.4e-20 102.1 178 38.8
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 1.6e-19 100.5 125 47.2
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 1.6e-19 100.5 113 46.9
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 2.1e-19 100.1 135 43.7
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 3.5e-19 99.4 179 39.1
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 6.0e-19 98.6 151 39.7
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 7.8e-19 98.2 108 47.2
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 1.0e-18 97.8 103 47.6
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.7e-18 97.1 101 48.5
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 2.3e-18 96.7 96 49.0
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 2.3e-18 96.7 116 44.8
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 2.3e-18 96.7 178 38.8
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 2.3e-18 96.7 171 39.8
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 3.9e-18 95.9 203 36.0
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 5.1e-18 95.5 169 38.5
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 6.6e-18 95.1 71 59.2
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 6.6e-18 95.1 189 36.5
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 1.1e-17 94.4 115 44.3
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 1.5e-17 94.0 95 49.5
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.5e-17 94.0 160 38.8
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 1.9e-17 93.6 110 46.4
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 1.9e-17 93.6 104 46.2
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 2.5e-17 93.2 104 46.2
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 3.3e-17 92.8 104 46.2
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 4.3e-17 92.4 76 50.0
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 9.5e-17 91.3 95 48.4
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 2.1e-16 90.1 158 36.1
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 2.1e-16 90.1 170 37.1
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 2.1e-16 90.1 109 45.0
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 2.1e-16 90.1 115 42.6
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 4.7e-16 89.0 138 39.9
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 4.7e-16 89.0 89 47.2
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 1.8e-15 87.0 133 41.4
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 3.1e-15 86.3 168 35.7
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.2e-14 84.3 154 36.4
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.5e-14 84.0 162 37.0
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.6e-14 83.2 161 36.0
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 7.6e-14 81.6 102 39.2
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 9.9e-14 81.3 175 34.3
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 9.9e-14 81.3 157 35.0
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 9.9e-14 81.3 137 35.8
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 1.3e-13 80.9 178 35.4
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.9e-13 79.7 141 36.9
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.1e-07 61.2 64 43.8
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 2.4e-07 60.1 64 45.3
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 3.1e-07 59.7 59 45.8
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 2.6e-06 56.6 105 34.3


User provided reference genes

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