Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 0.0e+00 1105.5 566 100.0
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 5.5e-200 701.4 563 62.7
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 2.1e-199 699.5 561 64.5
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 4.7e-199 698.4 561 62.2
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.4e-198 696.8 560 61.8
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 5.2e-198 694.9 561 62.6
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 5.2e-198 694.9 549 63.2
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 8.8e-198 694.1 564 62.6
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 8.8e-198 694.1 561 62.0
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.5e-197 693.3 558 62.0
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.5e-197 693.3 564 62.4
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 3.3e-197 692.2 562 62.1
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.5e-197 691.0 558 61.6
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.3e-196 690.3 558 61.6
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.7e-196 689.9 565 61.6
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.2e-196 689.5 560 61.4
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.7e-196 688.7 559 62.4
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 4.8e-196 688.3 559 61.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.3e-196 688.0 560 61.2
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 1.1e-195 687.2 560 62.1
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.8e-195 686.4 559 62.3
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 2.4e-195 686.0 563 61.3
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 3.1e-195 685.6 549 62.1
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.1e-195 685.3 558 61.1
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.1e-195 685.3 560 60.5
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.6e-194 683.3 560 61.4
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.6e-194 683.3 550 62.2
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.7e-194 682.6 560 60.4
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 2.7e-194 682.6 560 60.4
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.5e-194 682.2 549 61.7
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 7.7e-194 681.0 563 60.4
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 7.7e-194 681.0 566 61.0
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 7.7e-194 681.0 565 61.4
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 7.7e-194 681.0 562 61.0
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.3e-193 680.2 560 61.1
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.7e-193 679.9 562 61.2
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 2.2e-193 679.5 559 60.6
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 2.9e-193 679.1 555 61.8
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 6.5e-193 677.9 562 61.4
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 8.5e-193 677.6 562 60.5
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.5e-192 676.8 564 60.3
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.5e-192 674.9 559 60.6
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.2e-192 674.5 555 61.1
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 7.2e-192 674.5 555 60.9
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.2e-191 673.7 562 60.9
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 2.7e-191 672.5 546 61.0
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 2.7e-191 672.5 554 61.0
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 2.7e-191 672.5 564 60.1
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 3.6e-191 672.2 563 60.7
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.1e-191 671.4 561 60.6
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.0e-190 670.6 569 59.2
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.8e-190 669.8 553 61.3
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 2.3e-190 669.5 561 59.4
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 2.3e-190 669.5 553 61.7
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 3.0e-190 669.1 559 61.2
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.0e-190 668.7 573 59.2
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 8.8e-190 667.5 561 60.1
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.5e-189 666.8 549 61.2
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.5e-189 666.8 554 60.1
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 2.0e-189 666.4 561 59.5
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 3.4e-189 665.6 550 60.5
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 4.4e-189 665.2 552 60.1
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 4.4e-189 665.2 581 58.0
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 5.7e-189 664.8 629 55.3
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 5.7e-189 664.8 561 58.6
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 5.7e-189 664.8 565 60.7
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 7.5e-189 664.5 561 59.5
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 9.8e-189 664.1 559 59.7
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.3e-188 663.7 562 58.9
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.3e-188 663.7 562 59.1
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.3e-188 663.7 549 60.8
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.8e-188 662.5 552 60.0
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.7e-188 662.1 553 60.2
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 4.8e-188 661.8 551 59.9
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 4.8e-188 661.8 568 60.0
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 4.8e-188 661.8 559 59.2
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 6.3e-188 661.4 561 59.2
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 8.3e-188 661.0 565 59.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.1e-187 660.6 547 59.6
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.4e-187 660.2 550 60.4
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.4e-187 660.2 548 60.9
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.8e-187 659.8 563 59.0
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.1e-187 658.7 582 58.1
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.2e-186 657.1 552 59.8
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.2e-186 657.1 560 60.2
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.6e-186 656.8 554 59.9
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.0e-186 656.4 546 60.6
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.5e-186 655.6 561 58.5
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 4.5e-186 655.2 566 58.3
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 5.9e-186 654.8 542 61.8
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.3e-185 653.7 566 58.3
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 2.2e-185 652.9 546 60.4
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.9e-185 652.5 548 60.0
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 3.8e-185 652.1 552 59.2
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 3.8e-185 652.1 552 59.2
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 3.8e-185 652.1 603 55.7
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 6.5e-185 651.4 568 59.2
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.1e-184 650.6 552 59.1
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 1.9e-184 649.8 559 58.3
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 2.5e-184 649.4 552 58.9
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 7.2e-184 647.9 547 59.6
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 1.6e-183 646.7 545 60.7
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 2.3e-182 642.9 559 57.6
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 4.0e-182 642.1 553 58.6
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.2e-181 640.6 544 58.6
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.5e-181 640.2 599 56.1
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 4.4e-181 638.6 601 55.9
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.5e-181 637.9 526 61.6
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 9.8e-181 637.5 567 58.7
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 2.4e-179 632.9 534 59.7
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.2e-178 630.6 626 53.4
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 1.2e-178 630.6 560 57.3
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 5.2e-174 615.1 521 59.5
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 8.9e-174 614.4 562 56.2
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 2.0e-173 613.2 563 57.0
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.1e-171 607.4 599 53.4
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.8e-171 606.7 580 54.8
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 4.3e-168 595.5 503 58.6
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.2e-167 594.0 551 54.8
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.0e-166 590.9 564 55.0
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 3.4e-165 585.9 562 54.6
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 2.7e-162 576.2 448 65.0
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 5.0e-161 572.0 477 60.4
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.8e-157 558.5 469 58.8
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 9.2e-155 551.2 476 59.0
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.7e-153 547.0 553 52.1
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 6.6e-145 518.5 531 50.5
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.2e-140 503.4 422 61.1
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 3.1e-126 456.4 401 57.4
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 3.1e-126 456.4 401 57.4
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.3e-124 451.1 401 56.6
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.9e-123 447.2 359 63.8
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 4.6e-122 442.6 367 61.0
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.3e-105 387.1 319 62.1
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.5e-93 347.8 269 61.0
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 2.9e-92 343.6 340 55.0
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.6e-85 320.5 220 70.0
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 5.9e-69 266.2 195 65.1
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.3e-63 248.4 197 61.4
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 4.6e-53 213.4 229 54.6
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.6e-50 204.9 138 71.0
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-38 164.9 151 50.3
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 3.0e-36 157.5 145 50.3
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-34 151.8 185 43.2
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-32 145.6 116 63.8
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 7.1e-22 109.8 106 53.8
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.3e-20 104.8 89 52.8
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 3.9e-20 104.0 96 56.2
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 5.1e-20 103.6 113 48.7
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 7.6e-16 89.7 109 44.0
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.4e-14 85.5 89 51.7
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 1.5e-11 75.5 79 48.1
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 3.2e-06 57.8 49 57.1


User provided reference genes

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