Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 3.9e-107 391.7 238 100.0
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.1e-45 187.6 186 54.3
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 1.5e-42 177.2 135 66.7
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 3.4e-42 176.0 132 67.4
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.2e-41 173.3 135 65.2
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 2.2e-41 173.3 146 64.4
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 2.2e-41 173.3 135 65.2
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.7e-41 172.6 168 53.6
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 4.9e-41 172.2 143 62.9
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 6.4e-41 171.8 144 63.2
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.1e-40 171.0 169 58.6
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.1e-40 171.0 182 51.6
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.4e-40 170.6 148 59.5
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 3.2e-40 169.5 137 62.8
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.2e-40 169.5 144 63.2
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 3.2e-40 169.5 146 62.3
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 3.2e-40 169.5 184 52.2
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 5.4e-40 168.7 179 58.7
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 5.4e-40 168.7 169 58.0
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 5.4e-40 168.7 169 58.0
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 9.2e-40 167.9 209 48.8
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 9.2e-40 167.9 209 48.8
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 9.2e-40 167.9 145 62.1
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 1.2e-39 167.5 138 63.0
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 1.2e-39 167.5 234 43.2
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.2e-39 167.5 197 48.2
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.6e-39 167.2 139 61.2
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 1.6e-39 167.2 133 63.9
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 1.6e-39 167.2 133 63.9
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 1.6e-39 167.2 133 63.9
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.6e-39 167.2 179 55.9
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.6e-39 167.2 164 59.8
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 1.6e-39 167.2 207 53.1
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.1e-39 166.8 129 67.4
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 2.1e-39 166.8 148 60.1
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 2.1e-39 166.8 178 55.6
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 2.1e-39 166.8 169 59.8
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.1e-39 166.8 144 62.5
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.7e-39 166.4 215 49.3
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 2.7e-39 166.4 133 63.9
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 2.7e-39 166.4 137 64.2
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.7e-39 166.4 123 67.5
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 4.6e-39 165.6 195 49.7
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 4.6e-39 165.6 175 58.9
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 6.0e-39 165.2 137 60.6
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 6.0e-39 165.2 190 56.3
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 6.0e-39 165.2 197 54.3
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 6.0e-39 165.2 213 50.7
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 7.8e-39 164.9 137 62.8
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 7.8e-39 164.9 132 61.4
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.0e-38 164.5 133 63.2
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.0e-38 164.5 144 60.4
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.0e-38 164.5 132 63.6
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 1.0e-38 164.5 149 60.4
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.3e-38 164.1 213 51.2
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.7e-38 163.7 128 65.6
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 1.7e-38 163.7 132 59.8
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.7e-38 163.7 128 64.1
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 1.7e-38 163.7 210 59.0
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.7e-38 163.7 138 65.2
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.3e-38 163.3 195 49.2
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 2.3e-38 163.3 145 60.7
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 3.9e-38 162.5 133 61.7
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 3.9e-38 162.5 130 62.3
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 3.9e-38 162.5 157 58.0
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 3.9e-38 162.5 204 52.5
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 5.1e-38 162.2 160 57.5
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 5.1e-38 162.2 123 67.5
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 6.6e-38 161.8 193 50.3
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 6.6e-38 161.8 193 50.3
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 6.6e-38 161.8 130 60.8
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 6.6e-38 161.8 131 64.9
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 6.6e-38 161.8 169 59.8
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 8.6e-38 161.4 127 64.6
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 8.6e-38 161.4 197 53.8
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 8.6e-38 161.4 212 50.5
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.1e-37 161.0 171 56.1
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 1.1e-37 161.0 123 66.7
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.5e-37 159.8 174 54.0
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.5e-37 159.8 212 47.6
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 3.3e-37 159.5 135 63.0
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 3.3e-37 159.5 184 48.9
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 3.3e-37 159.5 136 62.5
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 4.3e-37 159.1 134 63.4
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 5.6e-37 158.7 130 61.5
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 5.6e-37 158.7 195 51.8
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 5.6e-37 158.7 163 55.2
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 5.6e-37 158.7 183 51.4
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 5.6e-37 158.7 149 57.0
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 7.3e-37 158.3 147 56.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 9.5e-37 157.9 157 56.7
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 9.5e-37 157.9 160 56.2
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 9.5e-37 157.9 133 58.6
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 9.5e-37 157.9 131 64.1
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 9.5e-37 157.9 131 64.1
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 2.1e-36 156.8 183 51.4
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 2.8e-36 156.4 133 62.4
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 2.8e-36 156.4 129 62.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 3.6e-36 156.0 142 57.7
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 3.6e-36 156.0 177 51.4
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 6.2e-36 155.2 165 55.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 8.1e-36 154.8 140 58.6
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.4e-35 154.1 198 46.0
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.8e-35 153.7 159 56.0
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 7.6e-34 148.3 135 60.0
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 2.4e-32 143.3 155 52.3
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 6.0e-31 138.7 95 70.5
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 2.3e-30 136.7 146 50.7
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 8.7e-30 134.8 86 75.6
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 6.4e-25 118.6 136 47.1
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 1.9e-24 117.1 79 69.6
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 9.3e-24 114.8 91 57.1
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 4.6e-23 112.5 159 43.4
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 1.7e-22 110.5 150 46.7
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 6.6e-22 108.6 93 62.4
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 8.7e-22 108.2 102 52.9
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.8e-20 102.4 94 57.4
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.0e-19 99.4 101 53.5
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 5.3e-19 99.0 143 46.9
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 5.3e-19 99.0 92 53.3
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 5.3e-19 99.0 101 54.5
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 9.0e-19 98.2 101 53.5
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.4e-18 96.3 86 55.8
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.8e-17 92.8 66 69.7
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 7.9e-15 85.1 134 38.1
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.1e-13 81.3 64 59.4
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 6.2e-12 75.5 171 32.2
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 6.2e-12 75.5 95 54.7
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.1e-11 74.7 171 31.6
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.4e-11 73.6 195 31.3
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 9.0e-11 71.6 171 30.4
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 2.6e-10 70.1 95 38.9
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 4.5e-10 69.3 122 40.2
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 4.9e-09 65.9 120 39.2
Ca_28818_v3 Cicer arietinum L. HOM05D005346 ORTHO05D007051 3.5e-07 59.7 95 34.7


User provided reference genes

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