Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 0.0e+00 1286.9 640 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 5.0e-157 558.9 375 73.6
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.5e-153 547.4 378 72.0
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.4e-151 540.0 343 74.9
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 1.0e-149 534.6 345 74.5
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 2.5e-148 530.0 343 75.5
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 2.5e-148 530.0 366 71.9
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 9.4e-148 528.1 345 74.5
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 2.1e-147 526.9 358 71.5
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 3.6e-147 526.2 345 73.9
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 6.1e-147 525.4 358 71.8
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 6.1e-147 525.4 381 69.6
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 1.4e-146 524.2 344 73.8
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 1.4e-146 524.2 345 73.6
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 1.8e-146 523.9 345 73.6
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 2.3e-146 523.5 371 70.4
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 3.0e-146 523.1 344 74.1
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 5.2e-146 522.3 368 70.1
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 8.8e-146 521.5 395 65.6
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 8.8e-146 521.5 344 73.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.5e-145 520.8 339 74.9
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 2.0e-145 520.4 358 70.7
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 2.0e-145 520.4 344 73.0
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 2.6e-145 520.0 408 65.2
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 2.6e-145 520.0 370 70.0
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 3.4e-145 519.6 343 72.6
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 3.4e-145 519.6 346 73.1
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 4.4e-145 519.2 339 74.6
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 4.4e-145 519.2 341 75.7
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 5.7e-145 518.8 382 68.3
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 7.5e-145 518.5 371 69.8
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 9.8e-145 518.1 381 68.5
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.3e-144 517.7 345 72.2
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 1.7e-144 517.3 363 71.6
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 1.7e-144 517.3 353 72.5
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 2.2e-144 516.9 340 74.4
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 2.2e-144 516.9 393 67.7
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 3.7e-144 516.2 364 70.9
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 3.7e-144 516.2 370 69.5
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 4.9e-144 515.8 394 66.5
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 4.9e-144 515.8 345 72.5
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 6.3e-144 515.4 348 71.6
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 6.3e-144 515.4 363 71.3
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 8.3e-144 515.0 371 69.3
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 8.3e-144 515.0 364 70.6
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 1.1e-143 514.6 339 73.2
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 1.4e-143 514.2 339 73.2
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.4e-143 514.2 339 73.2
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.8e-143 513.8 339 73.5
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 3.1e-143 513.1 365 69.9
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 7.0e-143 511.9 365 69.6
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 7.0e-143 511.9 365 69.3
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 9.1e-143 511.5 365 69.6
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 9.1e-143 511.5 339 73.7
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 9.1e-143 511.5 337 73.3
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 1.2e-142 511.1 342 71.9
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 2.0e-142 510.4 339 73.5
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 4.5e-142 509.2 340 72.6
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 4.5e-142 509.2 340 72.6
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 4.5e-142 509.2 387 67.7
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 5.9e-142 508.8 339 72.9
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 5.9e-142 508.8 339 72.6
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 1.3e-141 507.7 343 71.7
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.3e-141 507.7 351 70.9
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.7e-141 507.3 343 71.4
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 2.3e-141 506.9 339 72.6
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 2.3e-141 506.9 339 72.6
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 2.3e-141 506.9 339 72.6
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 2.3e-141 506.9 339 72.6
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 2.3e-141 506.9 344 72.1
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 2.9e-141 506.5 343 71.1
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 2.9e-141 506.5 339 72.6
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 2.9e-141 506.5 379 67.0
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 6.6e-141 505.4 339 72.3
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 6.6e-141 505.4 339 72.3
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 8.6e-141 505.0 344 70.9
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-140 504.2 339 72.3
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-140 504.2 339 72.3
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 2.5e-140 503.4 339 72.3
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 2.5e-140 503.4 332 73.2
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 3.3e-140 503.1 366 68.6
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.2e-140 502.7 339 71.7
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 4.2e-140 502.7 336 72.6
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 9.5e-140 501.5 368 67.7
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 2.1e-139 500.4 366 68.9
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 2.0e-137 493.8 338 70.7
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 2.6e-137 493.4 340 71.5
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 3.4e-137 493.0 339 71.7
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 4.4e-137 492.7 339 71.1
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 9.8e-137 491.5 339 71.4
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 2.2e-136 490.3 339 70.2
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 2.2e-136 490.3 339 70.2
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 8.3e-136 488.4 351 68.4
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 3.5e-134 483.0 376 65.4
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.8e-131 473.4 344 68.6
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 6.2e-131 472.2 482 53.3
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 1.4e-130 471.1 313 73.5
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 9.8e-129 464.9 317 72.2
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 3.7e-128 463.0 327 69.7
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.4e-127 460.3 339 67.8
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 2.0e-126 457.2 358 66.2
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.0e-125 454.9 353 63.5
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 1.3e-125 454.5 297 74.4
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 2.3e-125 453.8 313 70.0
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 1.1e-122 444.9 334 67.7
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 3.1e-122 443.4 283 75.3
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.5e-121 441.0 332 67.2
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.0e-117 428.3 365 61.1
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 2.8e-115 420.2 416 54.6
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.8e-115 420.2 339 63.1
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 8.9e-114 415.2 263 78.3
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 2.3e-109 400.6 251 76.9
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.6e-107 394.4 375 57.9
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 6.8e-106 389.0 278 70.9
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 4.9e-104 382.9 249 75.1
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 2.8e-99 367.1 247 74.5
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 7.6e-97 359.0 265 68.7
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 2.9e-96 357.1 237 72.6
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 6.2e-83 312.8 206 74.8
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 7.6e-81 305.8 408 44.1
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 2.9e-80 303.9 335 46.6
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 3.0e-69 267.3 167 76.0
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 4.3e-68 263.5 162 77.8
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 2.1e-62 244.6 180 66.1
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 6.1e-62 243.0 334 38.9
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.2e-57 228.8 372 38.7
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.3e-51 208.8 132 75.0
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.2e-49 202.2 353 41.1
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.2e-46 192.2 144 63.9
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 2.4e-42 177.9 120 67.5
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 8.0e-38 162.9 108 71.3
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 7.2e-31 139.8 109 64.2
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 3.4e-28 131.0 101 64.4
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 3.7e-27 127.5 83 71.1
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.1e-22 111.7 71 74.6
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 3.6e-22 110.9 128 46.1
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 8.9e-21 106.3 64 79.7
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 4.4e-20 104.0 79 62.0
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 7.5e-20 103.2 108 49.1
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 9.8e-20 102.8 75 69.3
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 4.9e-19 100.5 187 30.5
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 1.1e-18 99.4 75 61.3
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 7.0e-18 96.7 75 61.3
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 7.0e-18 96.7 75 61.3
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 7.0e-18 96.7 75 61.3
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 9.2e-18 96.3 75 60.0
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 9.2e-18 96.3 75 60.0
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 2.5e-15 88.2 64 67.2
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 3.2e-10 71.2 54 66.7
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 4.1e-10 70.9 46 73.9
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 6.6e-08 63.5 82 45.1
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 2.5e-07 61.6 35 77.1
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.6e-06 58.9 36 75.0
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 2.1e-06 58.5 37 67.6
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 6.2e-06 57.0 35 74.3


User provided reference genes

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